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The map label for this gene is csgD [C]

Identifier: 138894013

GI number: 138894013

Start: 386238

End: 387833

Strand: Direct

Name: csgD [C]

Synonym: GTNG_0339

Alternate gene names: 138894013

Gene position: 386238-387833 (Clockwise)

Preceding gene: 138894012

Following gene: 138894014

Centisome position: 10.88

GC content: 48.25

Gene sequence:

>1596_bases
ATGATTATTGTGGATTATGACGGCAATCCGGTAACGAAAGTATCGAATATGACCGAGCTGGCAGAGCTCGTTTTATTTGT
CGAGAAAAAGGGAGTCGCCTCGTTTTTTTGCCCTCGGGAGTTAGCGATTGATGGGCGACAACGGCCGACTGTTGTACCAG
CTGGGCATTTCGGATTGAAAAGCATCATTGCTCCCGTGCTTGTCGACGGGAGGGCAGAATATTGGGTTTGGGCTGGTGTG
TTTGTTGAGGAAGAAACGAAAGAGTTGATTGGCGATAATGCCCAGAAGTGGACGGCGGCCATCAAACAGGCAGATGCACT
GCCCGTTGGCGCGGTCGAAGCAAAGTTGAACGAAATTGAAAAGATGGCAGCCATATGTGGAGAATTAATCAGCAGCGAGC
GCCGCAAACAAAAATACCATGAGTACGGACAGCTACTTAAAACAGCGGTAACCGATCATTCGGCTGTAAATCGTATGGAC
AAGCTGCTTCACGAGCTGCGCAAGATGGATGAGTGCCTTGATATGGCGTTGTATATCGAAAAGCGCCAGCAAGGATGGGT
GGTGGCGGCAACGAACGGCGAAAAAGCCGCGCGCCTATATGGCAAAATGATCGATGAGCTGTTTCCACCGCTCTCCTTCC
CTGAAATGTCGCTCTGTCCTTCTTATTTTCAAAATGTTGCGTTAGATCCACGCTTTTCGTTTTTTGTCCGTCATGGCATC
CGCCCGAAAGCGATGATCATATATCCGGCGATATATGAGCAAAAAGTGGAAGGATGGGTCATTGTTGGCAGTGAGACAGC
ATCCTCATTGCCAGCAGCGATGAAGCCGCTTGGCGCTGCGCTCGTTCAATATGAGCATTTGCTTGTGAAATGCGCGGCCG
CTGATATGAAAATGAACCGTCATTTCATGCGGTTGACAATGTTAATGGAAATTGGTCGGGCGATGCACGTCGTGCAAAAT
GACGAAGAAATCGTTCGCATGATGACCCAGTTTGCGCTCGAGCTTGCCTACGGCGATTTCGTTTGTACCATATTGTATGT
TAATGGCAAGGCAGTCACCGTTCATGAAGGAGCGATTTCCGCTGAAATGGCGTCTTGTTACCAAGAGGATGTGCTTCGCC
ACTATGGACGTAGTATTAAACAGGTGGCGAAAAGTCAAGTCCCGTCTTTGCGCCAAGTAGGAGACAAAACCGTGATGGAA
GTGCCGTTTTTTGTCCGTGATGGCTATTATGGCGTTCTTGCGGTTCATTTAAAAGAAACGGACGAGGCGAAAGAAGCCGA
AGTGTACGTGACAGCGTTAGTGGCTGTTGGAGTGATGATGATGAATAGCGCAGCTCAAGATGGGAGCGGGCAGACAGTTA
ATGTTCAGATGTTGTCCGAACAGCTGACATCTCGAGAGATGGATGTGCTTGAACTGCTCGTCCAAGGTTGTAGCAACCGC
GAAATTTCAGAGCGTTTGTTCATTAGTGTACATACAGTAAAAAATCACATCACGAATATTTTTCAAAAGATAGGTGTCAA
CGACCGGTCACAGCTGATTGCCCTTGTGTATCAGTTAAGTCATCGTCGTCATGAAGGGAGCATCATCGGACGATAA

Upstream 100 bases:

>100_bases
TAAGGAAAAAACATAGTTTGGGAGAGTTGAGGGTGAATTGACGATTAATGATTTGTTGCAATATGTCCAAGATGCGTATG
CGGCATTAACGGGGTTAAGC

Downstream 100 bases:

>100_bases
GATCCATGATGTTCCTTTTTTATCATCCTAGCCGAGGAGATTTTGTACTCAAAAGTGAAATCAAGGACTAAAAGCATAGT
AAATTGGAATGTGATATGTT

Product: response regulator

Products: NA

Alternate protein names: ATP-Dependent Transcription Regulator LuxR; LuxR Family Transcriptional Regulator; Response Regulator Receiver Domain Protein; Two Component LuxR Family Transcriptional Regulator; Response Regulator; Two Component Transcriptional Regulator LuxR Family

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MIIVDYDGNPVTKVSNMTELAELVLFVEKKGVASFFCPRELAIDGRQRPTVVPAGHFGLKSIIAPVLVDGRAEYWVWAGV
FVEEETKELIGDNAQKWTAAIKQADALPVGAVEAKLNEIEKMAAICGELISSERRKQKYHEYGQLLKTAVTDHSAVNRMD
KLLHELRKMDECLDMALYIEKRQQGWVVAATNGEKAARLYGKMIDELFPPLSFPEMSLCPSYFQNVALDPRFSFFVRHGI
RPKAMIIYPAIYEQKVEGWVIVGSETASSLPAAMKPLGAALVQYEHLLVKCAAADMKMNRHFMRLTMLMEIGRAMHVVQN
DEEIVRMMTQFALELAYGDFVCTILYVNGKAVTVHEGAISAEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVME
VPFFVRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSREMDVLELLVQGCSNR
EISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLSHRRHEGSIIGR

Sequences:

>Translated_531_residues
MIIVDYDGNPVTKVSNMTELAELVLFVEKKGVASFFCPRELAIDGRQRPTVVPAGHFGLKSIIAPVLVDGRAEYWVWAGV
FVEEETKELIGDNAQKWTAAIKQADALPVGAVEAKLNEIEKMAAICGELISSERRKQKYHEYGQLLKTAVTDHSAVNRMD
KLLHELRKMDECLDMALYIEKRQQGWVVAATNGEKAARLYGKMIDELFPPLSFPEMSLCPSYFQNVALDPRFSFFVRHGI
RPKAMIIYPAIYEQKVEGWVIVGSETASSLPAAMKPLGAALVQYEHLLVKCAAADMKMNRHFMRLTMLMEIGRAMHVVQN
DEEIVRMMTQFALELAYGDFVCTILYVNGKAVTVHEGAISAEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVME
VPFFVRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSREMDVLELLVQGCSNR
EISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLSHRRHEGSIIGR
>Mature_531_residues
MIIVDYDGNPVTKVSNMTELAELVLFVEKKGVASFFCPRELAIDGRQRPTVVPAGHFGLKSIIAPVLVDGRAEYWVWAGV
FVEEETKELIGDNAQKWTAAIKQADALPVGAVEAKLNEIEKMAAICGELISSERRKQKYHEYGQLLKTAVTDHSAVNRMD
KLLHELRKMDECLDMALYIEKRQQGWVVAATNGEKAARLYGKMIDELFPPLSFPEMSLCPSYFQNVALDPRFSFFVRHGI
RPKAMIIYPAIYEQKVEGWVIVGSETASSLPAAMKPLGAALVQYEHLLVKCAAADMKMNRHFMRLTMLMEIGRAMHVVQN
DEEIVRMMTQFALELAYGDFVCTILYVNGKAVTVHEGAISAEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVME
VPFFVRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSREMDVLELLVQGCSNR
EISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLSHRRHEGSIIGR

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59502; Mature: 59502

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVDYDGNPVTKVSNMTELAELVLFVEKKGVASFFCPRELAIDGRQRPTVVPAGHFGLK
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCCEECCCCCCHH
SIIAPVLVDGRAEYWVWAGVFVEEETKELIGDNAQKWTAAIKQADALPVGAVEAKLNEIE
HHHHHHHCCCCCCEEEEEEEEECHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
KMAAICGELISSERRKQKYHEYGQLLKTAVTDHSAVNRMDKLLHELRKMDECLDMALYIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRQQGWVVAATNGEKAARLYGKMIDELFPPLSFPEMSLCPSYFQNVALDPRFSFFVRHGI
HHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHCCCCCCCHHHHHHCCC
RPKAMIIYPAIYEQKVEGWVIVGSETASSLPAAMKPLGAALVQYEHLLVKCAAADMKMNR
CCCEEEEEHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFMRLTMLMEIGRAMHVVQNDEEIVRMMTQFALELAYGDFVCTILYVNGKAVTVHEGAIS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCEEEEEECCCHH
AEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVMEVPFFVRDGYYGVLAVHLKET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCHHEECCCEEEEEEEEECC
DEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSREMDVLELLVQGCSNR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
EISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLSHRRHEGSIIGR
CCCHHHHEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIIVDYDGNPVTKVSNMTELAELVLFVEKKGVASFFCPRELAIDGRQRPTVVPAGHFGLK
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCCCEECCCCCCHH
SIIAPVLVDGRAEYWVWAGVFVEEETKELIGDNAQKWTAAIKQADALPVGAVEAKLNEIE
HHHHHHHCCCCCCEEEEEEEEECHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
KMAAICGELISSERRKQKYHEYGQLLKTAVTDHSAVNRMDKLLHELRKMDECLDMALYIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRQQGWVVAATNGEKAARLYGKMIDELFPPLSFPEMSLCPSYFQNVALDPRFSFFVRHGI
HHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHCCCCCCCHHHHHHCCC
RPKAMIIYPAIYEQKVEGWVIVGSETASSLPAAMKPLGAALVQYEHLLVKCAAADMKMNR
CCCEEEEEHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFMRLTMLMEIGRAMHVVQNDEEIVRMMTQFALELAYGDFVCTILYVNGKAVTVHEGAIS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCEEEEEECCCHH
AEMASCYQEDVLRHYGRSIKQVAKSQVPSLRQVGDKTVMEVPFFVRDGYYGVLAVHLKET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCHHEECCCEEEEEEEEECC
DEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTSREMDVLELLVQGCSNR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
EISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQLSHRRHEGSIIGR
CCCHHHHEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA