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The map label for this gene is opuCC [H]

Identifier: 138893953

GI number: 138893953

Start: 314277

End: 315179

Strand: Reverse

Name: opuCC [H]

Synonym: GTNG_0277

Alternate gene names: 138893953

Gene position: 315179-314277 (Counterclockwise)

Preceding gene: 138893954

Following gene: 138893952

Centisome position: 8.88

GC content: 44.52

Gene sequence:

>903_bases
ATGTTGCGAAAATGGTTCATGTCTTTGCTCGCTGTCGGGCTTGTTTTAGGATTGGCCGCCTGCAGCGGAAAAAGTGATGC
GAAAGGGAAAATCGTGATTACCGGAAAGAAGTTTACCGAACAGATGATTTTGACGCATGTACTAGCTGAATATGTGAAAG
CCAACACCGATTTGGATGTCGAGGTGAAGGAAAGTTTAGGCGGTGCCTTTATGTTGCAGCAAGCCATTGAAAACGGGGAC
ATCGACATGTATGTTGAATATACAGGGACAGGGTATTTAAACATTTTAAAACAGCCGTACGATCCAACGAAAACGCCCGA
ACAAATCTACAATGAAACGAAGAAATTATATAAGGAAAAATACAACATCGCTTGGCTCAAATCACTCGGATTTAACAATA
CGTATGCATTAGCGATGCGGAGAGACCTTGCTGAAAAGCTCGGAGTTAAAACGTACTCCGATTTAGTGAACCATTCATCT
TCCCTCACATTTGGGTCAGACGCCGAGTTTTTTGAGCGAAGCGACGGCTATGATGGGCTTGTCGATACGTACGGATTCCA
CTTCAAGAAAACGGTCAACATCGATCCAGACTTGCAATACGAAGCAGCGAAAAATGGAAAGATTGATGTCATCACGGCCT
ACACGACGGATGCCCGTATTAAGAAATATGACCTCGTTGTGCTCAAAGACGATAAACAGTACTTCCCGCCATACTACGCC
GTACCGATCATCCGCCAAGAAGTGTTGGATGCCAACCCGGGATTGGAAGAAAAACTCAATCAACTAGCGAATATTTTAAC
TGACGAAAAAATGATGGAACTCAACGGCGAAGTGAACTTAGAAGGGAAACAGCCGCGCAAGGTGGCGATTGACTTCTTGA
AATCGGAAGGACTGATCGACTAG

Upstream 100 bases:

>100_bases
ACGTTACCCTTTTATTATGACGCTTTTCACCCCTCCGCGTCATTTTGCCGCTTTTTTTATTCTCTTCTCCCCTATGATAC
TAGCAGAAAAAGGAGGAATT

Downstream 100 bases:

>100_bases
AAAGTGAGGAATGTGGATGATTCGGTTTGAAAACGTAACAAAACAGTATGAAGATGGGTTCGTTGCCTTAAAAAATATCA
ATCTTGAAATCCGTAAAGGA

Product: proline/glycine betaine ABC transporter permease/periplasmic protein

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLRKWFMSLLAVGLVLGLAACSGKSDAKGKIVITGKKFTEQMILTHVLAEYVKANTDLDVEVKESLGGAFMLQQAIENGD
IDMYVEYTGTGYLNILKQPYDPTKTPEQIYNETKKLYKEKYNIAWLKSLGFNNTYALAMRRDLAEKLGVKTYSDLVNHSS
SLTFGSDAEFFERSDGYDGLVDTYGFHFKKTVNIDPDLQYEAAKNGKIDVITAYTTDARIKKYDLVVLKDDKQYFPPYYA
VPIIRQEVLDANPGLEEKLNQLANILTDEKMMELNGEVNLEGKQPRKVAIDFLKSEGLID

Sequences:

>Translated_300_residues
MLRKWFMSLLAVGLVLGLAACSGKSDAKGKIVITGKKFTEQMILTHVLAEYVKANTDLDVEVKESLGGAFMLQQAIENGD
IDMYVEYTGTGYLNILKQPYDPTKTPEQIYNETKKLYKEKYNIAWLKSLGFNNTYALAMRRDLAEKLGVKTYSDLVNHSS
SLTFGSDAEFFERSDGYDGLVDTYGFHFKKTVNIDPDLQYEAAKNGKIDVITAYTTDARIKKYDLVVLKDDKQYFPPYYA
VPIIRQEVLDANPGLEEKLNQLANILTDEKMMELNGEVNLEGKQPRKVAIDFLKSEGLID
>Mature_300_residues
MLRKWFMSLLAVGLVLGLAACSGKSDAKGKIVITGKKFTEQMILTHVLAEYVKANTDLDVEVKESLGGAFMLQQAIENGD
IDMYVEYTGTGYLNILKQPYDPTKTPEQIYNETKKLYKEKYNIAWLKSLGFNNTYALAMRRDLAEKLGVKTYSDLVNHSS
SLTFGSDAEFFERSDGYDGLVDTYGFHFKKTVNIDPDLQYEAAKNGKIDVITAYTTDARIKKYDLVVLKDDKQYFPPYYA
VPIIRQEVLDANPGLEEKLNQLANILTDEKMMELNGEVNLEGKQPRKVAIDFLKSEGLID

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=302, Percent_Identity=28.476821192053, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 33885; Mature: 33885

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKWFMSLLAVGLVLGLAACSGKSDAKGKIVITGKKFTEQMILTHVLAEYVKANTDLDV
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCE
EVKESLGGAFMLQQAIENGDIDMYVEYTGTGYLNILKQPYDPTKTPEQIYNETKKLYKEK
EEHHHCCHHHHHHHHHCCCCEEEEEEEECCCEEEHHCCCCCCCCCHHHHHHHHHHHHHHH
YNIAWLKSLGFNNTYALAMRRDLAEKLGVKTYSDLVNHSSSLTFGSDAEFFERSDGYDGL
CCEEEEHHCCCCCEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC
VDTYGFHFKKTVNIDPDLQYEAAKNGKIDVITAYTTDARIKKYDLVVLKDDKQYFPPYYA
HHHCCCEEEEEECCCCCCCEECCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCCHH
VPIIRQEVLDANPGLEEKLNQLANILTDEKMMELNGEVNLEGKQPRKVAIDFLKSEGLID
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLRKWFMSLLAVGLVLGLAACSGKSDAKGKIVITGKKFTEQMILTHVLAEYVKANTDLDV
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCE
EVKESLGGAFMLQQAIENGDIDMYVEYTGTGYLNILKQPYDPTKTPEQIYNETKKLYKEK
EEHHHCCHHHHHHHHHCCCCEEEEEEEECCCEEEHHCCCCCCCCCHHHHHHHHHHHHHHH
YNIAWLKSLGFNNTYALAMRRDLAEKLGVKTYSDLVNHSSSLTFGSDAEFFERSDGYDGL
CCEEEEHHCCCCCEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCC
VDTYGFHFKKTVNIDPDLQYEAAKNGKIDVITAYTTDARIKKYDLVVLKDDKQYFPPYYA
HHHCCCEEEEEECCCCCCCEECCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCCHH
VPIIRQEVLDANPGLEEKLNQLANILTDEKMMELNGEVNLEGKQPRKVAIDFLKSEGLID
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]