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The map label for this gene is ydcA [H]

Identifier: 138893878

GI number: 138893878

Start: 216473

End: 217090

Strand: Reverse

Name: ydcA [H]

Synonym: GTNG_0202

Alternate gene names: 138893878

Gene position: 217090-216473 (Counterclockwise)

Preceding gene: 138893891

Following gene: 138893870

Centisome position: 6.11

GC content: 51.13

Gene sequence:

>618_bases
ATGTTTCACGATGCCGGGGATGTCCGCTCACTCGTCCGTCTCTATCCGGTTGTATCGATCGTGTTGTCCGCCCATATCAT
TTTATGGATTTTGTTCGTTCTTCCCCTTACGGCGCTAGAACCTGTTTGGCAATACATCATCGGGACGAATGGCGCCATTC
GAAACGGGGAATATTGGCGGCTGATTAGCCCGCTCGTTCTGCACTACGATTTCAACCATATGGCGGCCAACAGCCTTTCT
CTATGGCTGTTCGGCCCGTGGCTGGAACGTGCGCTTGGAAAAGGGAAGTTTTTACTTCTTTATATCGGGGGCGGCGTCGG
CGCCAATATCGCCACCGTATTGCTTCTTCCGCCGATGTACACCCATGTCGGGGCGTCAGGCGCCATTTTCGCTTTGTTTG
GCATGTACAGCTATCTCGCCTTGTTTCGCCGCGATTTAATCGCCCCAAAGCACACCCAACTGTTATTAGTCATTGTCGTA
ATTCATTTGTTGCTTAGTTTGATGGAACCAGATGGAAATCTCATGGCTCATCTATTTGGCTTCGCCACCGGCGGCTTGTT
GGCTCCTTTTTTAGCCATCCGTCCCCAGTTACCGATGTTTCATGTGATCCGGTCATGA

Upstream 100 bases:

>100_bases
TTTTACACTCTTTGTGCATAAGATGGCTTATAAAAAACGGACATGACCTTCCCCACTTGCGGGGGATATACGATTTTTGA
TAAAGAAGGGAGACAAAGCT

Downstream 100 bases:

>100_bases
AAAAACGGCGCTTAATGCGCCGTAATCCGCCGTTTTTTCGTCCGACCACGCGCCGAACTGTCCGGGCGGCTGCCCCGCTT
TTTCTCCCGTTTGACTGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MFHDAGDVRSLVRLYPVVSIVLSAHIILWILFVLPLTALEPVWQYIIGTNGAIRNGEYWRLISPLVLHYDFNHMAANSLS
LWLFGPWLERALGKGKFLLLYIGGGVGANIATVLLLPPMYTHVGASGAIFALFGMYSYLALFRRDLIAPKHTQLLLVIVV
IHLLLSLMEPDGNLMAHLFGFATGGLLAPFLAIRPQLPMFHVIRS

Sequences:

>Translated_205_residues
MFHDAGDVRSLVRLYPVVSIVLSAHIILWILFVLPLTALEPVWQYIIGTNGAIRNGEYWRLISPLVLHYDFNHMAANSLS
LWLFGPWLERALGKGKFLLLYIGGGVGANIATVLLLPPMYTHVGASGAIFALFGMYSYLALFRRDLIAPKHTQLLLVIVV
IHLLLSLMEPDGNLMAHLFGFATGGLLAPFLAIRPQLPMFHVIRS
>Mature_205_residues
MFHDAGDVRSLVRLYPVVSIVLSAHIILWILFVLPLTALEPVWQYIIGTNGAIRNGEYWRLISPLVLHYDFNHMAANSLS
LWLFGPWLERALGKGKFLLLYIGGGVGANIATVLLLPPMYTHVGASGAIFALFGMYSYLALFRRDLIAPKHTQLLLVIVV
IHLLLSLMEPDGNLMAHLFGFATGGLLAPFLAIRPQLPMFHVIRS

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 22785; Mature: 22785

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHDAGDVRSLVRLYPVVSIVLSAHIILWILFVLPLTALEPVWQYIIGTNGAIRNGEYWR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LISPLVLHYDFNHMAANSLSLWLFGPWLERALGKGKFLLLYIGGGVGANIATVLLLPPMY
HHHHHHHHCCCHHHHHCCEEEEEECHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCHHH
THVGASGAIFALFGMYSYLALFRRDLIAPKHTQLLLVIVVIHLLLSLMEPDGNLMAHLFG
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FATGGLLAPFLAIRPQLPMFHVIRS
HHHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MFHDAGDVRSLVRLYPVVSIVLSAHIILWILFVLPLTALEPVWQYIIGTNGAIRNGEYWR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LISPLVLHYDFNHMAANSLSLWLFGPWLERALGKGKFLLLYIGGGVGANIATVLLLPPMY
HHHHHHHHCCCHHHHHCCEEEEEECHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCHHH
THVGASGAIFALFGMYSYLALFRRDLIAPKHTQLLLVIVVIHLLLSLMEPDGNLMAHLFG
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FATGGLLAPFLAIRPQLPMFHVIRS
HHHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]