Click here to switch to the map view.

The map label for this gene is yqiR [H]

Identifier: 138893853

GI number: 138893853

Start: 189415

End: 191484

Strand: Direct

Name: yqiR [H]

Synonym: GTNG_0177

Alternate gene names: 138893853

Gene position: 189415-191484 (Clockwise)

Preceding gene: 138893847

Following gene: 138893854

Centisome position: 5.34

GC content: 52.37

Gene sequence:

>2070_bases
ATGGCGATGAGAGTGAAAGACATAATGACGAGAACGACAACGGTTATTTTTGAAAACGATTTCCTTGAACAAACAGCTCG
CATGTTGGCTGAGCGTAGGATTGAGGGAACGGTCGTATTTCGCTGCGAAGGGGAAATCTCCGGAGTGTTGACGGACAACG
ACGTGTTGTTTGGCCTCATACAAGGGAAAACGACCGTACGTGAAGTGATGCATCCGTCGTTGCCGCCTCTTTCCATCCAT
GACTGTATCGAAAACATCAAGTTTGGCGATGGTTCGCTCCGTCCGGTTGTTGATGAAAACGGCCGCCTTGTTGGCGTGTT
GACGAAAGGACAATATTTGGAGGCGTATGCAAAAGCGGTGCAGCTCCGTTTAAAACATATGGATGCTATTTTCAACGCTG
CCCATAACGGTATTATATCGATCGATGCCGAAGGGCGGATTACATCGATCAACCCGCCAGCCGAAAAAATGGCACGAACG
ACGAAGGAAGAGGCCATTGGCCGGTTTTTAACCGATGTCGTCATCCCGTCCGGCTTGCTTGACGTCGTGCGCACGGGGGA
GGGACATACGGAAAAATATCGCGTCGGCAAGCGCATCTATATTACGAACCGTTCCCCTATTATTGATGAAGGTCAGGTGG
TTGGAGCGGTCGGCGTGTTCCAAGATATTTCCGAGATCGAGTTTATCTCCCATGAACTTGAGACGGTTAAACAAATCGTC
AATGAGTTGCAAACGGTGATGGATGCAGCTAGCGATGGCATCGCCATTATCGATCGCCACGGGGGGATCGTCCGGCAAAA
CGAAAAATGGGCTGCTTTATTCCCGAGTATGGAACATCAACGTGTTCCTGCCCCACTTGAGCGGGTCGTGCGCCAGGCGT
TTGACAGCTGCCAATCGTGTTCGATGCTTCATCAAGGGGCGGAAACCGGTAACACGTTGATCGTTTCCGCGGTGCCGATC
ATCGAGAAGGAAGGCCAGGCGGAGCGGCTCGTCCTCTATGTTAAAGATATGACTGAAATGGAACAGCTGCGTGTTGAACT
TGAGGAGACGAAGCGGTTGCTCCATACGCTAAGCCAGAAGGAGGATGGCCTCATTTACCGCGCCCCAGCGATGGCGCATA
TGGTCAACATTGCCAAGCAGGCAGCAGCGGTCGATGTAACGGTGCTTCTGACCGGGGAGTCGGGTACCGGAAAGGAAGAG
CTGGCGAACTTCATCTGGAGGCAAAGTGCTCGCAGCAACCGTCCGTTTGTGAAAGTGAACTGCGGGGCGATCCCAGAAAC
GTTGATGGAGTCCGAACTGTTCGGCTATGAAGCGGGGGCGTTTACCGGTGCAGTGAAAAAAGGGAAAAAGGGCTACTTTG
AACAGGCGGACGGCGGGACAATCTTTCTTGATGAAATTAGCGAAATCCCGCTTCGCTTACAAGTAAAGCTCCTTCGTGTG
TTGCAGTCGATGGAAATCGTTCGTCTCGGGGCAGAGGCGCCGAAACAAATTGATGTGCGCGTCATCGCTGCCACGAACAA
GCCGCTTGAGGAACTTGTCACCGCTGGGCGGTTTCGCGCCGACTTGTTTTACCGGTTGAACGTCATGCCGATTGTCATTC
CACCGTTGCGCGACCGGAAGGAAGACATCCCGCTCTTGGTCGACCATTATCGAAAACGGTTTGCTGAAAAATATCAGAAA
CCACTTGTATTCACAGACCGTGCGCTCGAGGCGATGATGGATTACCACTGGCCCGGCAACGTCCGCGAACTTGTCAATGC
TGTGGAGCGCATGTTTGTGACTGCCACCTCATCTATCGTTGATGAGGATCAAGTAGCGAAATGGCTCCACCTTGAGCCGT
CGCCGACCATAAGCCCGGTGGCGATAGGGGAAATCATCCCGCTCAAACAGGCGGTGGCCGAAGTCGAGCGACAGCTCATG
ATCAAGGCGCTCAACAAAGCAAGAACGTATCGACAAGCAGCAAAGCTTTTAGGTGTTGATGCGTCCACGCTCGTGCGCAA
GGCACAAAAGTACAAAATCAAATCATTGGGAGGAGAAGACGATGGAGTTTACGTTACCAGCCGAGATTGA

Upstream 100 bases:

>100_bases
CAGCGAGTAAGATGAATGGTAGAGGTTTGTCTTTTTTGAATATTCATAACAAATTGTTTTGGCATAGAAATTGCTTAAAT
AGAAAATAAGAAGGGCGGGG

Downstream 100 bases:

>100_bases
ATTTTTGAAAGAAAACGTGCGCAAGTTTGTCAGAGAAGTTGTTGAACCGGTGGCGATGGATATTGAGGAAAACGACCACA
TTCCAGAAGATATTATCGAA

Product: sigma-54-dependent transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 689; Mature: 688

Protein sequence:

>689_residues
MAMRVKDIMTRTTTVIFENDFLEQTARMLAERRIEGTVVFRCEGEISGVLTDNDVLFGLIQGKTTVREVMHPSLPPLSIH
DCIENIKFGDGSLRPVVDENGRLVGVLTKGQYLEAYAKAVQLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMART
TKEEAIGRFLTDVVIPSGLLDVVRTGEGHTEKYRVGKRIYITNRSPIIDEGQVVGAVGVFQDISEIEFISHELETVKQIV
NELQTVMDAASDGIAIIDRHGGIVRQNEKWAALFPSMEHQRVPAPLERVVRQAFDSCQSCSMLHQGAETGNTLIVSAVPI
IEKEGQAERLVLYVKDMTEMEQLRVELEETKRLLHTLSQKEDGLIYRAPAMAHMVNIAKQAAAVDVTVLLTGESGTGKEE
LANFIWRQSARSNRPFVKVNCGAIPETLMESELFGYEAGAFTGAVKKGKKGYFEQADGGTIFLDEISEIPLRLQVKLLRV
LQSMEIVRLGAEAPKQIDVRVIAATNKPLEELVTAGRFRADLFYRLNVMPIVIPPLRDRKEDIPLLVDHYRKRFAEKYQK
PLVFTDRALEAMMDYHWPGNVRELVNAVERMFVTATSSIVDEDQVAKWLHLEPSPTISPVAIGEIIPLKQAVAEVERQLM
IKALNKARTYRQAAKLLGVDASTLVRKAQKYKIKSLGGEDDGVYVTSRD

Sequences:

>Translated_689_residues
MAMRVKDIMTRTTTVIFENDFLEQTARMLAERRIEGTVVFRCEGEISGVLTDNDVLFGLIQGKTTVREVMHPSLPPLSIH
DCIENIKFGDGSLRPVVDENGRLVGVLTKGQYLEAYAKAVQLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMART
TKEEAIGRFLTDVVIPSGLLDVVRTGEGHTEKYRVGKRIYITNRSPIIDEGQVVGAVGVFQDISEIEFISHELETVKQIV
NELQTVMDAASDGIAIIDRHGGIVRQNEKWAALFPSMEHQRVPAPLERVVRQAFDSCQSCSMLHQGAETGNTLIVSAVPI
IEKEGQAERLVLYVKDMTEMEQLRVELEETKRLLHTLSQKEDGLIYRAPAMAHMVNIAKQAAAVDVTVLLTGESGTGKEE
LANFIWRQSARSNRPFVKVNCGAIPETLMESELFGYEAGAFTGAVKKGKKGYFEQADGGTIFLDEISEIPLRLQVKLLRV
LQSMEIVRLGAEAPKQIDVRVIAATNKPLEELVTAGRFRADLFYRLNVMPIVIPPLRDRKEDIPLLVDHYRKRFAEKYQK
PLVFTDRALEAMMDYHWPGNVRELVNAVERMFVTATSSIVDEDQVAKWLHLEPSPTISPVAIGEIIPLKQAVAEVERQLM
IKALNKARTYRQAAKLLGVDASTLVRKAQKYKIKSLGGEDDGVYVTSRD
>Mature_688_residues
AMRVKDIMTRTTTVIFENDFLEQTARMLAERRIEGTVVFRCEGEISGVLTDNDVLFGLIQGKTTVREVMHPSLPPLSIHD
CIENIKFGDGSLRPVVDENGRLVGVLTKGQYLEAYAKAVQLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMARTT
KEEAIGRFLTDVVIPSGLLDVVRTGEGHTEKYRVGKRIYITNRSPIIDEGQVVGAVGVFQDISEIEFISHELETVKQIVN
ELQTVMDAASDGIAIIDRHGGIVRQNEKWAALFPSMEHQRVPAPLERVVRQAFDSCQSCSMLHQGAETGNTLIVSAVPII
EKEGQAERLVLYVKDMTEMEQLRVELEETKRLLHTLSQKEDGLIYRAPAMAHMVNIAKQAAAVDVTVLLTGESGTGKEEL
ANFIWRQSARSNRPFVKVNCGAIPETLMESELFGYEAGAFTGAVKKGKKGYFEQADGGTIFLDEISEIPLRLQVKLLRVL
QSMEIVRLGAEAPKQIDVRVIAATNKPLEELVTAGRFRADLFYRLNVMPIVIPPLRDRKEDIPLLVDHYRKRFAEKYQKP
LVFTDRALEAMMDYHWPGNVRELVNAVERMFVTATSSIVDEDQVAKWLHLEPSPTISPVAIGEIIPLKQAVAEVERQLMI
KALNKARTYRQAAKLLGVDASTLVRKAQKYKIKSLGGEDDGVYVTSRD

Specific function: Member Of The Two-Component Regulatory System Zras/Zrar. When Activated By Zras It Acts In Conjunction With Sigma-54 To Regulate The Expression Of Zrap. Positively Autoregulates The Expression Of The Zrasr Operon. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1790437, Length=355, Percent_Identity=42.2535211267606, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI1788550, Length=351, Percent_Identity=39.031339031339, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI87082117, Length=327, Percent_Identity=42.2018348623853, Blast_Score=245, Evalue=6e-66,
Organism=Escherichia coli, GI1789233, Length=321, Percent_Identity=40.809968847352, Blast_Score=242, Evalue=7e-65,
Organism=Escherichia coli, GI1788905, Length=253, Percent_Identity=45.8498023715415, Blast_Score=231, Evalue=2e-61,
Organism=Escherichia coli, GI1790299, Length=336, Percent_Identity=41.3690476190476, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI87082152, Length=324, Percent_Identity=39.5061728395062, Blast_Score=220, Evalue=3e-58,
Organism=Escherichia coli, GI1789087, Length=315, Percent_Identity=40.9523809523809, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI1786524, Length=352, Percent_Identity=38.3522727272727, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI87081872, Length=326, Percent_Identity=37.1165644171779, Blast_Score=210, Evalue=3e-55,
Organism=Escherichia coli, GI1787583, Length=317, Percent_Identity=36.9085173501577, Blast_Score=199, Evalue=7e-52,
Organism=Escherichia coli, GI87081858, Length=465, Percent_Identity=27.741935483871, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1789828, Length=278, Percent_Identity=33.4532374100719, Blast_Score=129, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 76892; Mature: 76761

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRVKDIMTRTTTVIFENDFLEQTARMLAERRIEGTVVFRCEGEISGVLTDNDVLFGLI
CCCCHHHHHHHHEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCEEEEEE
QGKTTVREVMHPSLPPLSIHDCIENIKFGDGSLRPVVDENGRLVGVLTKGQYLEAYAKAV
CCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEEEEECCHHHHHHHHHH
QLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMARTTKEEAIGRFLTDVVIPSGLL
HHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
DVVRTGEGHTEKYRVGKRIYITNRSPIIDEGQVVGAVGVFQDISEIEFISHELETVKQIV
HHHHCCCCCCHHEECCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
NELQTVMDAASDGIAIIDRHGGIVRQNEKWAALFPSMEHQRVPAPLERVVRQAFDSCQSC
HHHHHHHHHCCCCEEEEECCCCEEECCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHH
SMLHQGAETGNTLIVSAVPIIEKEGQAERLVLYVKDMTEMEQLRVELEETKRLLHTLSQK
HHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
EDGLIYRAPAMAHMVNIAKQAAAVDVTVLLTGESGTGKEELANFIWRQSARSNRPFVKVN
CCCEEEECHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
CGAIPETLMESELFGYEAGAFTGAVKKGKKGYFEQADGGTIFLDEISEIPLRLQVKLLRV
CCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCHHCCCHHHHHHHHHH
LQSMEIVRLGAEAPKQIDVRVIAATNKPLEELVTAGRFRADLFYRLNVMPIVIPPLRDRK
HHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHCCCHHHHHEEEEEEEEEEECCCCCCC
EDIPLLVDHYRKRFAEKYQKPLVFTDRALEAMMDYHWPGNVRELVNAVERMFVTATSSIV
CCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
DEDQVAKWLHLEPSPTISPVAIGEIIPLKQAVAEVERQLMIKALNKARTYRQAAKLLGVD
CHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ASTLVRKAQKYKIKSLGGEDDGVYVTSRD
HHHHHHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure 
AMRVKDIMTRTTTVIFENDFLEQTARMLAERRIEGTVVFRCEGEISGVLTDNDVLFGLI
CCCHHHHHHHHEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCEEEEEE
QGKTTVREVMHPSLPPLSIHDCIENIKFGDGSLRPVVDENGRLVGVLTKGQYLEAYAKAV
CCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEEEEECCHHHHHHHHHH
QLRLKHMDAIFNAAHNGIISIDAEGRITSINPPAEKMARTTKEEAIGRFLTDVVIPSGLL
HHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
DVVRTGEGHTEKYRVGKRIYITNRSPIIDEGQVVGAVGVFQDISEIEFISHELETVKQIV
HHHHCCCCCCHHEECCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
NELQTVMDAASDGIAIIDRHGGIVRQNEKWAALFPSMEHQRVPAPLERVVRQAFDSCQSC
HHHHHHHHHCCCCEEEEECCCCEEECCCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHH
SMLHQGAETGNTLIVSAVPIIEKEGQAERLVLYVKDMTEMEQLRVELEETKRLLHTLSQK
HHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
EDGLIYRAPAMAHMVNIAKQAAAVDVTVLLTGESGTGKEELANFIWRQSARSNRPFVKVN
CCCEEEECHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
CGAIPETLMESELFGYEAGAFTGAVKKGKKGYFEQADGGTIFLDEISEIPLRLQVKLLRV
CCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCHHCCCHHHHHHHHHH
LQSMEIVRLGAEAPKQIDVRVIAATNKPLEELVTAGRFRADLFYRLNVMPIVIPPLRDRK
HHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHCCCHHHHHEEEEEEEEEEECCCCCCC
EDIPLLVDHYRKRFAEKYQKPLVFTDRALEAMMDYHWPGNVRELVNAVERMFVTATSSIV
CCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
DEDQVAKWLHLEPSPTISPVAIGEIIPLKQAVAEVERQLMIKALNKARTYRQAAKLLGVD
CHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ASTLVRKAQKYKIKSLGGEDDGVYVTSRD
HHHHHHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]