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The map label for this gene is rsiW [H]

Identifier: 138893827

GI number: 138893827

Start: 159307

End: 159918

Strand: Direct

Name: rsiW [H]

Synonym: GTNG_0148

Alternate gene names: 138893827

Gene position: 159307-159918 (Clockwise)

Preceding gene: 138893826

Following gene: 138893828

Centisome position: 4.49

GC content: 49.35

Gene sequence:

>612_bases
ATGGAATGTCCGAAAGAAATAGTATCACTTATGCACAGCTATCTTGACGGCGATCTTCAGCCGGATGAGGAGCTACGGCT
AAAAGAGCATTTACGTTCGTGCGCCGCTTGTGCTGCCCATTTTCATGAATTAAAAAAGACGGTCGCCTTTCTACAATATG
CCTCCCACGTGACCGCACCGTCATCATTTACAGCAACGGTGATGGGGGCCATGCCGAAAGAGAGAAAGACAGTGCGGCTG
CGTCGTTGGTTGCACGGGCATCCACTGTTGACTGCCGCTTCTCTGTTTCTTCTTCTCACTGTAGGAAGCGTTGCTTCCTC
ATGGGGGGGAAAAGGCTCATTTTCCGTTTCGGCTGATGAACCTGTCATCATCCGTGACCATACGGTCATCGTGCCAAAAG
GTGAAACTGTCAAAGGAGATATTGTCGTTCGCAATGGATCGATCCGGATTGAAGGAACGGTGGATGGGAATGTGACGGTG
ATCCGTGGGGAGAAATATATGGCATCGGCCGGGCAGGTGACAGGCGAAGTAGAGGAAATTAATCAAGTGTTTGAATGGAT
TTGGTATAATATTAAAGAGAAGGCCAGCCGTGCGCTCCAATCACTTGAATGA

Upstream 100 bases:

>100_bases
AGATTTTAGGCTTGCCGGTTGGTACAGTGAAAACGAGGCTGCATCGCGGCCGTGAAGCGTTGCGCAGGCAACTGGGCCAT
TTATAAAAGGGTGGGAGACT

Downstream 100 bases:

>100_bases
TGGCAGCCATCGTCCGATGGCTTTTTCCATGACCATCAGAAGGTTGGAATTAGAGATAAAGGAAGTGTGAAGATGTCCTT
CGAAGAGCTCCCCATCGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MECPKEIVSLMHSYLDGDLQPDEELRLKEHLRSCAACAAHFHELKKTVAFLQYASHVTAPSSFTATVMGAMPKERKTVRL
RRWLHGHPLLTAASLFLLLTVGSVASSWGGKGSFSVSADEPVIIRDHTVIVPKGETVKGDIVVRNGSIRIEGTVDGNVTV
IRGEKYMASAGQVTGEVEEINQVFEWIWYNIKEKASRALQSLE

Sequences:

>Translated_203_residues
MECPKEIVSLMHSYLDGDLQPDEELRLKEHLRSCAACAAHFHELKKTVAFLQYASHVTAPSSFTATVMGAMPKERKTVRL
RRWLHGHPLLTAASLFLLLTVGSVASSWGGKGSFSVSADEPVIIRDHTVIVPKGETVKGDIVVRNGSIRIEGTVDGNVTV
IRGEKYMASAGQVTGEVEEINQVFEWIWYNIKEKASRALQSLE
>Mature_203_residues
MECPKEIVSLMHSYLDGDLQPDEELRLKEHLRSCAACAAHFHELKKTVAFLQYASHVTAPSSFTATVMGAMPKERKTVRL
RRWLHGHPLLTAASLFLLLTVGSVASSWGGKGSFSVSADEPVIIRDHTVIVPKGETVKGDIVVRNGSIRIEGTVDGNVTV
IRGEKYMASAGQVTGEVEEINQVFEWIWYNIKEKASRALQSLE

Specific function: Is the anti-sigma factor for sigW. The presence of rsiW leads to the inactivation of sigW, and its proteolytic destruction to sigma-W activation [H]

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein. Note=Site-2 clipped rsiW is released from the membrane to the cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anti-sigma-W factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007607 [H]

Pfam domain/function: PF04519 DUF583 [H]

EC number: NA

Molecular weight: Translated: 22417; Mature: 22417

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MECPKEIVSLMHSYLDGDLQPDEELRLKEHLRSCAACAAHFHELKKTVAFLQYASHVTAP
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSFTATVMGAMPKERKTVRLRRWLHGHPLLTAASLFLLLTVGSVASSWGGKGSFSVSADE
CCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
PVIIRDHTVIVPKGETVKGDIVVRNGSIRIEGTVDGNVTVIRGEKYMASAGQVTGEVEEI
CEEEECCEEEEECCCCEECCEEEECCEEEEEEEECCCEEEEECCHHHHCCCCCCCCHHHH
NQVFEWIWYNIKEKASRALQSLE
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MECPKEIVSLMHSYLDGDLQPDEELRLKEHLRSCAACAAHFHELKKTVAFLQYASHVTAP
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSFTATVMGAMPKERKTVRLRRWLHGHPLLTAASLFLLLTVGSVASSWGGKGSFSVSADE
CCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
PVIIRDHTVIVPKGETVKGDIVVRNGSIRIEGTVDGNVTVIRGEKYMASAGQVTGEVEEI
CEEEECCEEEEECCCCEECCEEEECCEEEEEEEECCCEEEEECCHHHHCCCCCCCCHHHH
NQVFEWIWYNIKEKASRALQSLE
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA