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The map label for this gene is algB [H]

Identifier: 13474775

GI number: 13474775

Start: 4620483

End: 4621514

Strand: Direct

Name: algB [H]

Synonym: mlr5739

Alternate gene names: 13474775

Gene position: 4620483-4621514 (Clockwise)

Preceding gene: 13474774

Following gene: 13474776

Centisome position: 65.67

GC content: 63.76

Gene sequence:

>1032_bases
ATGCCTGAAACCAGGGTCCTCTACATCGATGACGACGACGCGCTCGCGCGCCTCGTACAGAAAAAGCTCGGCCGCCTCGG
TTTCGTCGTCGAGCATGCTTCCAGCCCGGAACAGGCTCTGACCAGACTTGAGGAAGGCGGCTTCGACGTCCTGGCGCTCG
ACCACTATCTGGGAGCCGGGACCGGGCTTGAATTCCTGGCAAGGCTTGCAACGCGCGGCGCTGCTCCCCCCGCCGTCTAT
GTAACAGGCTCTTCCGAAATGAGCGTCGCGGTGGCCGCCCTGAAGGCCGGGGCTAGCGACTTCGTGCCGAAGACGATCGG
TGACGACTTCATAGCCCTTCTGGCCTCCGCTCTCGATCAGGCTGTCGCCAAGGCACGCCTCGTCGCCGAGAAGGAAGCCG
CCGAGGCGCAGGTGCGTGCGGCGCGCGACCGCGCCGAACTCCTGCTGGCCGAGGTCAACCACCGGGTCGCCAACAGCCTT
GCAATGGTCTCATCGCTGGTCAACCTGCAGGCCAATGTGTTGACGGACAAGGGTGCCAAGGATGCGCTTGCCGAAACCCA
AGCGCGCATCTTCGCCATAGCCTCGGTGCACAAGCGCCTCTACACCTCCGGCTCGGTCGGCATCGTCGAACTCGACGGCT
ATCTCGGCGGCCTCCTGGAAAACCTTGGCGGCTCGATGCGTGGCCAGGGGCACGGCGCCAACCTGATCAGCGATCTGGCG
CCGCTGACACTCGGCATCGACGCCACGATCAATCTCGGGGTGATCGTGACCGAATTGGTCACCAATGCCTTCAAATATGC
CTATCCCGACAAATCCGGCGATGTACGCGTATTGCTGCGCGAGGACGGGCCGGGTCGCGCTTTGCTGACCGTCGAGGACG
ACGGCGTCGGCAACGCCGGCAACGTCATCAAGGGCACCGGCTTGGGAACGCGCATCATCAAGGCAATGGCAAGAAGCATC
GACGCCGATGTTGCCTATCAGGCACGCGATCCCGGGACAGCGGTGGTTCTGAGCTTTGCCCTGCCGCAGTGA

Upstream 100 bases:

>100_bases
CATCACCAAGCCCGTGAACTACGAAGGCTTCGCCAACGCCATCAGGCAGCTCGGCCTCCTGTTCACCGTCATTCAGGTCC
CGGAAACGGCCTGAAAAGCG

Downstream 100 bases:

>100_bases
CGGGCTATGCGCGCTGGCAGGCTTTGCCTCCGCCATGGGTCATGCAAGGATGCGCCCGGCGTTTTCTTCAGGTGGAGAGT
TCGATGTTTTGGCAGACCGG

Product: two-component sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MPETRVLYIDDDDALARLVQKKLGRLGFVVEHASSPEQALTRLEEGGFDVLALDHYLGAGTGLEFLARLATRGAAPPAVY
VTGSSEMSVAVAALKAGASDFVPKTIGDDFIALLASALDQAVAKARLVAEKEAAEAQVRAARDRAELLLAEVNHRVANSL
AMVSSLVNLQANVLTDKGAKDALAETQARIFAIASVHKRLYTSGSVGIVELDGYLGGLLENLGGSMRGQGHGANLISDLA
PLTLGIDATINLGVIVTELVTNAFKYAYPDKSGDVRVLLREDGPGRALLTVEDDGVGNAGNVIKGTGLGTRIIKAMARSI
DADVAYQARDPGTAVVLSFALPQ

Sequences:

>Translated_343_residues
MPETRVLYIDDDDALARLVQKKLGRLGFVVEHASSPEQALTRLEEGGFDVLALDHYLGAGTGLEFLARLATRGAAPPAVY
VTGSSEMSVAVAALKAGASDFVPKTIGDDFIALLASALDQAVAKARLVAEKEAAEAQVRAARDRAELLLAEVNHRVANSL
AMVSSLVNLQANVLTDKGAKDALAETQARIFAIASVHKRLYTSGSVGIVELDGYLGGLLENLGGSMRGQGHGANLISDLA
PLTLGIDATINLGVIVTELVTNAFKYAYPDKSGDVRVLLREDGPGRALLTVEDDGVGNAGNVIKGTGLGTRIIKAMARSI
DADVAYQARDPGTAVVLSFALPQ
>Mature_342_residues
PETRVLYIDDDDALARLVQKKLGRLGFVVEHASSPEQALTRLEEGGFDVLALDHYLGAGTGLEFLARLATRGAAPPAVYV
TGSSEMSVAVAALKAGASDFVPKTIGDDFIALLASALDQAVAKARLVAEKEAAEAQVRAARDRAELLLAEVNHRVANSLA
MVSSLVNLQANVLTDKGAKDALAETQARIFAIASVHKRLYTSGSVGIVELDGYLGGLLENLGGSMRGQGHGANLISDLAP
LTLGIDATINLGVIVTELVTNAFKYAYPDKSGDVRVLLREDGPGRALLTVEDDGVGNAGNVIKGTGLGTRIIKAMARSID
ADVAYQARDPGTAVVLSFALPQ

Specific function: Positive regulator of the alginate biosynthetic gene algD [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 35826; Mature: 35695

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPETRVLYIDDDDALARLVQKKLGRLGFVVEHASSPEQALTRLEEGGFDVLALDHYLGAG
CCCCEEEEECCCHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCC
TGLEFLARLATRGAAPPAVYVTGSSEMSVAVAALKAGASDFVPKTIGDDFIALLASALDQ
CHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHH
AVAKARLVAEKEAAEAQVRAARDRAELLLAEVNHRVANSLAMVSSLVNLQANVLTDKGAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCH
DALAETQARIFAIASVHKRLYTSGSVGIVELDGYLGGLLENLGGSMRGQGHGANLISDLA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHH
PLTLGIDATINLGVIVTELVTNAFKYAYPDKSGDVRVLLREDGPGRALLTVEDDGVGNAG
HHEECCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC
NVIKGTGLGTRIIKAMARSIDADVAYQARDPGTAVVLSFALPQ
CEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCC
>Mature Secondary Structure 
PETRVLYIDDDDALARLVQKKLGRLGFVVEHASSPEQALTRLEEGGFDVLALDHYLGAG
CCCEEEEECCCHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHCCCCEEEEEHHHHCCC
TGLEFLARLATRGAAPPAVYVTGSSEMSVAVAALKAGASDFVPKTIGDDFIALLASALDQ
CHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHH
AVAKARLVAEKEAAEAQVRAARDRAELLLAEVNHRVANSLAMVSSLVNLQANVLTDKGAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCH
DALAETQARIFAIASVHKRLYTSGSVGIVELDGYLGGLLENLGGSMRGQGHGANLISDLA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHH
PLTLGIDATINLGVIVTELVTNAFKYAYPDKSGDVRVLLREDGPGRALLTVEDDGVGNAG
HHEECCCCEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC
NVIKGTGLGTRIIKAMARSIDADVAYQARDPGTAVVLSFALPQ
CEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]