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The map label for this gene is 13474752

Identifier: 13474752

GI number: 13474752

Start: 4597643

End: 4598935

Strand: Direct

Name: 13474752

Synonym: mlr5709

Alternate gene names: NA

Gene position: 4597643-4598935 (Clockwise)

Preceding gene: 13474751

Following gene: 13474753

Centisome position: 65.34

GC content: 63.34

Gene sequence:

>1293_bases
TTGTCCGAAACCATCATTTCCGCCGAAGTCGTCGAAAAAAATAACGCCGCCCGCAAGCCCGACCTCGAGCGCGACTACGC
CTCGCTCGGCGAGCGTCTCGACCGTCGCGGCATTGCCATCGACGCCATCCGCGCCAAGGTCGAGAAATTTGCGGTCGCCA
TCCCCTCCTGGGGCGTCGGCACCGGCGGCACGCGCTTTGCCCGCTTTCCCGGCGCCGGCGAGCCGCGCGATATTTTCGAC
AAGATCGAGGATTGCGCCGTCATCAGTCAGCTGACGCAGGCGACACCGACCGTCTCGTTGCACATTCCGTGGGACAAGGC
CGACCCGAACCGGCTGAAGCAGGCGGCCTCGCGCTTCGGCCTCGGCTTCGACGCGATGAATTCCAACACCTTCTCCGATG
CCCGCGACCAGAAACTCTCCTACAAATTCGGCTCGCTGTCGCATGCCGATGCCGGCACCCGCCGGCAGGCGGTCGAGCAC
AATCTCGAATGCATCGAGATCGGCAAGACGCTCGGCTCCAAGGCGCTGACGGTGTGGATCGGCGACGGCTCGAATTTTCC
CGGCCAAGTCAATTTCGCCAGAGCGTTCGAGCGCTACCTCGACGCCATGAAGGCGGTTTATGCCGGGCTGCCCGCCGACT
GGAAACTGTTCACCGAACACAAGATGTACGAGCCGGCCTTCTATTCCACGGTCGTGCAGGACTGGGGTACCAACTACCTT
ATCGCCAAGGAATTGGGCGACAGGGCTTTCTGCCTCGTCGATCTCGGCCACCATGCGCCGAACGTCAACATCGAGATGAT
CGTGTCGCGGCTGATCCAGTTCAAGAAACTCGGCGGCTTCCACTTCAACGATTCGAAATATGGCGACGACGATCTCGACG
CCGGTTCGATCGATCCTTACCGGCTGTTCCTGGTCTTCAACGAACTGGTCGATGCCGAACTGTCCGGCGCCGAAGGTTTC
GATCCCGCCCACATGCTCGACCAGAGCCACAACGTCACCGATCCGATCGAAAGCCTGATGCTGTCGGCGGTCGAGGTGCA
GCGCGCCTATGCGCAGGCGCTGCTGGTCGACCGCAAGGCGCTCGAAGGTTTTCAGGACGGCAATGACGCGCTGATGGCGA
CGCAGACGCTGAAGGCGGCCTACCGCACCGATGTCGAGCCGATCCTGGCCATGGCGCGGCTGAAAACCGGGGGCGCCATC
GATCCGGTCGCCACCTACCGGGCGGCGGGCTACCGCGCCAAGGTCGCGGCCGAACGCCCGGCTGTCACCGGCGGCAGCGG
CGGGATTGTCTGA

Upstream 100 bases:

>100_bases
TGGAGCGCTTCCCTTCTCCCCGTTTCACGGGGAGAAGGTGGGCCGAAGGGCCGGATGAGGGGCGGCGCCAGCCGAACATA
TTCTTGGGAGGAACCTGCAC

Downstream 100 bases:

>100_bases
CGCGCCTGACATCCGAATTGATCCGCCTGGCCCATCGTTGATGGTGGACACGGCCGCAGCGACGGGTTCTTCTAGGCGTC
CCCGCCAGGAGAACCCGCCA

Product: sugar isomerase

Products: D-xylulose

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MSETIISAEVVEKNNAARKPDLERDYASLGERLDRRGIAIDAIRAKVEKFAVAIPSWGVGTGGTRFARFPGAGEPRDIFD
KIEDCAVISQLTQATPTVSLHIPWDKADPNRLKQAASRFGLGFDAMNSNTFSDARDQKLSYKFGSLSHADAGTRRQAVEH
NLECIEIGKTLGSKALTVWIGDGSNFPGQVNFARAFERYLDAMKAVYAGLPADWKLFTEHKMYEPAFYSTVVQDWGTNYL
IAKELGDRAFCLVDLGHHAPNVNIEMIVSRLIQFKKLGGFHFNDSKYGDDDLDAGSIDPYRLFLVFNELVDAELSGAEGF
DPAHMLDQSHNVTDPIESLMLSAVEVQRAYAQALLVDRKALEGFQDGNDALMATQTLKAAYRTDVEPILAMARLKTGGAI
DPVATYRAAGYRAKVAAERPAVTGGSGGIV

Sequences:

>Translated_430_residues
MSETIISAEVVEKNNAARKPDLERDYASLGERLDRRGIAIDAIRAKVEKFAVAIPSWGVGTGGTRFARFPGAGEPRDIFD
KIEDCAVISQLTQATPTVSLHIPWDKADPNRLKQAASRFGLGFDAMNSNTFSDARDQKLSYKFGSLSHADAGTRRQAVEH
NLECIEIGKTLGSKALTVWIGDGSNFPGQVNFARAFERYLDAMKAVYAGLPADWKLFTEHKMYEPAFYSTVVQDWGTNYL
IAKELGDRAFCLVDLGHHAPNVNIEMIVSRLIQFKKLGGFHFNDSKYGDDDLDAGSIDPYRLFLVFNELVDAELSGAEGF
DPAHMLDQSHNVTDPIESLMLSAVEVQRAYAQALLVDRKALEGFQDGNDALMATQTLKAAYRTDVEPILAMARLKTGGAI
DPVATYRAAGYRAKVAAERPAVTGGSGGIV
>Mature_429_residues
SETIISAEVVEKNNAARKPDLERDYASLGERLDRRGIAIDAIRAKVEKFAVAIPSWGVGTGGTRFARFPGAGEPRDIFDK
IEDCAVISQLTQATPTVSLHIPWDKADPNRLKQAASRFGLGFDAMNSNTFSDARDQKLSYKFGSLSHADAGTRRQAVEHN
LECIEIGKTLGSKALTVWIGDGSNFPGQVNFARAFERYLDAMKAVYAGLPADWKLFTEHKMYEPAFYSTVVQDWGTNYLI
AKELGDRAFCLVDLGHHAPNVNIEMIVSRLIQFKKLGGFHFNDSKYGDDDLDAGSIDPYRLFLVFNELVDAELSGAEGFD
PAHMLDQSHNVTDPIESLMLSAVEVQRAYAQALLVDRKALEGFQDGNDALMATQTLKAAYRTDVEPILAMARLKTGGAID
PVATYRAAGYRAKVAAERPAVTGGSGGIV

Specific function: Unknown

COG id: COG4952

COG function: function code M; Predicted sugar isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAL_RHILO (Q98B65)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_106321.1
- ProteinModelPortal:   Q98B65
- SMR:   Q98B65
- GeneID:   1228982
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr5709
- NMPDR:   fig|266835.1.peg.4425
- HOGENOM:   HBG293787
- OMA:   LGGFHFN
- ProtClustDB:   CLSK864374
- InterPro:   IPR013451
- InterPro:   IPR013022
- InterPro:   IPR012307
- Gene3D:   G3DSA:3.20.20.150
- TIGRFAMs:   TIGR02629

Pfam domain/function: PF01261 AP_endonuc_2; SSF51658 Xyl_isomerase-like_TIM-brl

EC number: 5.3.1.5

Molecular weight: Translated: 47035; Mature: 46903

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETIISAEVVEKNNAARKPDLERDYASLGERLDRRGIAIDAIRAKVEKFAVAIPSWGVG
CCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCC
TGGTRFARFPGAGEPRDIFDKIEDCAVISQLTQATPTVSLHIPWDKADPNRLKQAASRFG
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHC
LGFDAMNSNTFSDARDQKLSYKFGSLSHADAGTRRQAVEHNLECIEIGKTLGSKALTVWI
CCCCCCCCCCCCHHHHCCHHEECCCCCCCCCCHHHHHHHHCCHHEEHHHHCCCCEEEEEE
GDGSNFPGQVNFARAFERYLDAMKAVYAGLPADWKLFTEHKMYEPAFYSTVVQDWGTNYL
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCHHHHHHHHHHCCCCEE
IAKELGDRAFCLVDLGHHAPNVNIEMIVSRLIQFKKLGGFHFNDSKYGDDDLDAGSIDPY
EEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
RLFLVFNELVDAELSGAEGFDPAHMLDQSHNVTDPIESLMLSAVEVQRAYAQALLVDRKA
HHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEGFQDGNDALMATQTLKAAYRTDVEPILAMARLKTGGAIDPVATYRAAGYRAKVAAERP
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECCCCC
AVTGGSGGIV
CCCCCCCCCC
>Mature Secondary Structure 
SETIISAEVVEKNNAARKPDLERDYASLGERLDRRGIAIDAIRAKVEKFAVAIPSWGVG
CCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCC
TGGTRFARFPGAGEPRDIFDKIEDCAVISQLTQATPTVSLHIPWDKADPNRLKQAASRFG
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHC
LGFDAMNSNTFSDARDQKLSYKFGSLSHADAGTRRQAVEHNLECIEIGKTLGSKALTVWI
CCCCCCCCCCCCHHHHCCHHEECCCCCCCCCCHHHHHHHHCCHHEEHHHHCCCCEEEEEE
GDGSNFPGQVNFARAFERYLDAMKAVYAGLPADWKLFTEHKMYEPAFYSTVVQDWGTNYL
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHCCCCCHHHHHHHHHHCCCCEE
IAKELGDRAFCLVDLGHHAPNVNIEMIVSRLIQFKKLGGFHFNDSKYGDDDLDAGSIDPY
EEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
RLFLVFNELVDAELSGAEGFDPAHMLDQSHNVTDPIESLMLSAVEVQRAYAQALLVDRKA
HHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEGFQDGNDALMATQTLKAAYRTDVEPILAMARLKTGGAIDPVATYRAAGYRAKVAAERP
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEECCCCC
AVTGGSGGIV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-xylose

Specific reaction: D-xylose = D-xylulose

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11214968