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The map label for this gene is ydfF [H]

Identifier: 13473867

GI number: 13473867

Start: 3653819

End: 3654493

Strand: Direct

Name: ydfF [H]

Synonym: mlr4605

Alternate gene names: 13473867

Gene position: 3653819-3654493 (Clockwise)

Preceding gene: 13473864

Following gene: 13473872

Centisome position: 51.93

GC content: 68.15

Gene sequence:

>675_bases
ATGCGTGAAGGACCCGACATCGCCCGCATCGCCAGCCTGGTCGGCGACCCCGCCCGTGCCAACATGCTGAATGCCTTGAT
GGGCGGCACGGCGCTGACGGCGAGTGAACTCGCGCTGGAGGCCGGCGTGTCGTTGCCGACCGCCTCGTCGCATCTGTCGA
AACTGATGGAAGGCGGACTGCTGACTTTGGCCAGCCAGGGCCGCCATCGCTATTACGGCCTCGCCGGCCCGCAGGTGGCG
GGTATGATCGAGGCCATCACCGGTGTCGCCGAGGCGGTCGGCCCCAAGCGCGTGCGGCCGGGTCCGCGCGACGGCGCCAT
GCGCATCGCCCGCGTCTGCTACGACCATCTCGCCGGCGAGCAGGCGGTGGCGATGCTCGACCGTCTGGTCGAAAAGGACA
TATTGCTGCGCGACGACAGGGAGATCCGGCTCGGCCCTTCGGCGTCGTCGCATTTTGCCGCCATGGGCATCGATGTCGAC
GCCAAACCGCGCCGCCCGGTCTGCCGCGCCTGCCTCGACTGGAGCGTGCGCCGCTCGCACCTCGCCGGCACGCTGGGCGC
CGCCATCCTCGACAAGATCCTTCTGGAAAAATGGGCGCGCCGCGAAAAGGACAGCCGCGCGGTGATTTTCTCGCCACCGG
GCAAGCAGGCCTTCGAGAAGGTGTTTTTGAGCTGA

Upstream 100 bases:

>100_bases
AGTTTCATGTCAGGAGCCATCGTCGCTTGCGTCGCCGGCTCCTTGATCTGACCGAAGAATAATGGCTATCTGGCAAGAAT
GCTTCGACAAGGAACGAACT

Downstream 100 bases:

>100_bases
GCGCGGAGAACTACCCCCGCTTCAACACCTTGCCCTGCTTGAAGAAATCCATCCACGGGTCGGCTTCCGCCAACTTCGCA
AGCGTCGTCTTGTCGCCTAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MREGPDIARIASLVGDPARANMLNALMGGTALTASELALEAGVSLPTASSHLSKLMEGGLLTLASQGRHRYYGLAGPQVA
GMIEAITGVAEAVGPKRVRPGPRDGAMRIARVCYDHLAGEQAVAMLDRLVEKDILLRDDREIRLGPSASSHFAAMGIDVD
AKPRRPVCRACLDWSVRRSHLAGTLGAAILDKILLEKWARREKDSRAVIFSPPGKQAFEKVFLS

Sequences:

>Translated_224_residues
MREGPDIARIASLVGDPARANMLNALMGGTALTASELALEAGVSLPTASSHLSKLMEGGLLTLASQGRHRYYGLAGPQVA
GMIEAITGVAEAVGPKRVRPGPRDGAMRIARVCYDHLAGEQAVAMLDRLVEKDILLRDDREIRLGPSASSHFAAMGIDVD
AKPRRPVCRACLDWSVRRSHLAGTLGAAILDKILLEKWARREKDSRAVIFSPPGKQAFEKVFLS
>Mature_224_residues
MREGPDIARIASLVGDPARANMLNALMGGTALTASELALEAGVSLPTASSHLSKLMEGGLLTLASQGRHRYYGLAGPQVA
GMIEAITGVAEAVGPKRVRPGPRDGAMRIARVCYDHLAGEQAVAMLDRLVEKDILLRDDREIRLGPSASSHFAAMGIDVD
AKPRRPVCRACLDWSVRRSHLAGTLGAAILDKILLEKWARREKDSRAVIFSPPGKQAFEKVFLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 24015; Mature: 24015

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREGPDIARIASLVGDPARANMLNALMGGTALTASELALEAGVSLPTASSHLSKLMEGGL
CCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
LTLASQGRHRYYGLAGPQVAGMIEAITGVAEAVGPKRVRPGPRDGAMRIARVCYDHLAGE
EEECCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCH
QAVAMLDRLVEKDILLRDDREIRLGPSASSHFAAMGIDVDAKPRRPVCRACLDWSVRRSH
HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LAGTLGAAILDKILLEKWARREKDSRAVIFSPPGKQAFEKVFLS
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCC
>Mature Secondary Structure
MREGPDIARIASLVGDPARANMLNALMGGTALTASELALEAGVSLPTASSHLSKLMEGGL
CCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
LTLASQGRHRYYGLAGPQVAGMIEAITGVAEAVGPKRVRPGPRDGAMRIARVCYDHLAGE
EEECCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCH
QAVAMLDRLVEKDILLRDDREIRLGPSASSHFAAMGIDVDAKPRRPVCRACLDWSVRRSH
HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LAGTLGAAILDKILLEKWARREKDSRAVIFSPPGKQAFEKVFLS
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]