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The map label for this gene is pecT [H]

Identifier: 13473849

GI number: 13473849

Start: 3638462

End: 3639352

Strand: Direct

Name: pecT [H]

Synonym: mlr4581

Alternate gene names: 13473849

Gene position: 3638462-3639352 (Clockwise)

Preceding gene: 13473846

Following gene: 13473853

Centisome position: 51.71

GC content: 62.51

Gene sequence:

>891_bases
ATGGCCGGAGTGATGAGCCGCCGACTGGATGTCGACGCCTTGCGCGCACTGGTCGCGATCGAGAGGCACGGCGGCGTCAC
GCGCGCGGCCGAGATTCTCGGCCTGTCGCAGTCGGCCGTCAGCCACAAGATCAGGAGGCTTGAAACGAGTCTCGACTGCG
AAATCCTCACCCGGAAAGCAAATGCGCCGATGTTCACCACGGCCGGACAGGATCTGCTTGGCTATGCGCGGCGCATTCTC
GGCATCCATGACGAGGCGGTCCTGAGCCTGTCGAAAAGCCCTTTGCAAGGCAAGATCGCGCTGGGGATGACCGAGGATAC
GACGTGCACGGACCTTTCGCGCATTCTCGGCCGCTTTCGCCGGCTCTACCCGGAGGTGAGCGTCCGCACGCAGGTGCGCA
TGAGCCTCGTGTTGCAGGAACAGCTCAGCCAGGGAGCCCTTGATGCCGCCATCATCCAGGTCTTCCAGCACGAGGTCCGC
CCCGCCGATATCCTCCTGTTCCGCGAGACGCTGCATTGGGTGAAATCGCGCGATCTGGTCCTGTCGGCCGGGAAGCCGGT
CCCGTTTCTTTCCTTCGATGAAAATTGCTTCTATAGGCGCTGGGGCATCGACGTCGGGCAGGATGAGGATACGGTGTTGG
AGACCGTGTTCGAATGCTCCAGCGCAGCCGGGATCATTGCAGGCGTGACCGCGGGGCTCGGCGTCGCACTTTTGAGTCAG
CGCTACCTGCAGCCCGCCATGGAAATCGTCGACGACAAATTCCCCAAGCCTCCAGACCTGGCCTATGTCATCAGGCGCGC
GCGGGTCCCCAGAAACCCCGCGCTCGAGACTTTGGTCAGGGAGATCGAAGCCGAGGTAAAGCGCTACGGAACGCTGCAAA
TCGCAGTCTGA

Upstream 100 bases:

>100_bases
ATGATCATGAAGTGGTCCGAAAACCGGCATATCAACTTGCTTGGCGGACATCAGAGGATCAGAAATTGACGCATCTGGTT
GGTTTCGAGCGAGGATTGTC

Downstream 100 bases:

>100_bases
GGGGGTCGTGCTGCGAAAGCCGGCTGGTCTCTTATTCCTGAAGCGATCTCGGACCGCTGACGAACAGGCTGCCCCTGACA
TAGAACCGCAGCAGCCGGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MAGVMSRRLDVDALRALVAIERHGGVTRAAEILGLSQSAVSHKIRRLETSLDCEILTRKANAPMFTTAGQDLLGYARRIL
GIHDEAVLSLSKSPLQGKIALGMTEDTTCTDLSRILGRFRRLYPEVSVRTQVRMSLVLQEQLSQGALDAAIIQVFQHEVR
PADILLFRETLHWVKSRDLVLSAGKPVPFLSFDENCFYRRWGIDVGQDEDTVLETVFECSSAAGIIAGVTAGLGVALLSQ
RYLQPAMEIVDDKFPKPPDLAYVIRRARVPRNPALETLVREIEAEVKRYGTLQIAV

Sequences:

>Translated_296_residues
MAGVMSRRLDVDALRALVAIERHGGVTRAAEILGLSQSAVSHKIRRLETSLDCEILTRKANAPMFTTAGQDLLGYARRIL
GIHDEAVLSLSKSPLQGKIALGMTEDTTCTDLSRILGRFRRLYPEVSVRTQVRMSLVLQEQLSQGALDAAIIQVFQHEVR
PADILLFRETLHWVKSRDLVLSAGKPVPFLSFDENCFYRRWGIDVGQDEDTVLETVFECSSAAGIIAGVTAGLGVALLSQ
RYLQPAMEIVDDKFPKPPDLAYVIRRARVPRNPALETLVREIEAEVKRYGTLQIAV
>Mature_295_residues
AGVMSRRLDVDALRALVAIERHGGVTRAAEILGLSQSAVSHKIRRLETSLDCEILTRKANAPMFTTAGQDLLGYARRILG
IHDEAVLSLSKSPLQGKIALGMTEDTTCTDLSRILGRFRRLYPEVSVRTQVRMSLVLQEQLSQGALDAAIIQVFQHEVRP
ADILLFRETLHWVKSRDLVLSAGKPVPFLSFDENCFYRRWGIDVGQDEDTVLETVFECSSAAGIIAGVTAGLGVALLSQR
YLQPAMEIVDDKFPKPPDLAYVIRRARVPRNPALETLVREIEAEVKRYGTLQIAV

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=260, Percent_Identity=29.2307692307692, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787806, Length=240, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=26.7489711934156, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=154, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32821; Mature: 32690

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVMSRRLDVDALRALVAIERHGGVTRAAEILGLSQSAVSHKIRRLETSLDCEILTRKA
CCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCC
NAPMFTTAGQDLLGYARRILGIHDEAVLSLSKSPLQGKIALGMTEDTTCTDLSRILGRFR
CCCEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
RLYPEVSVRTQVRMSLVLQEQLSQGALDAAIIQVFQHEVRPADILLFRETLHWVKSRDLV
HHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE
LSAGKPVPFLSFDENCFYRRWGIDVGQDEDTVLETVFECSSAAGIIAGVTAGLGVALLSQ
EECCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RYLQPAMEIVDDKFPKPPDLAYVIRRARVPRNPALETLVREIEAEVKRYGTLQIAV
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
>Mature Secondary Structure 
AGVMSRRLDVDALRALVAIERHGGVTRAAEILGLSQSAVSHKIRRLETSLDCEILTRKA
CCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCC
NAPMFTTAGQDLLGYARRILGIHDEAVLSLSKSPLQGKIALGMTEDTTCTDLSRILGRFR
CCCEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
RLYPEVSVRTQVRMSLVLQEQLSQGALDAAIIQVFQHEVRPADILLFRETLHWVKSRDLV
HHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE
LSAGKPVPFLSFDENCFYRRWGIDVGQDEDTVLETVFECSSAAGIIAGVTAGLGVALLSQ
EECCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RYLQPAMEIVDDKFPKPPDLAYVIRRARVPRNPALETLVREIEAEVKRYGTLQIAV
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]