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The map label for this gene is cydA [H]

Identifier: 13473805

GI number: 13473805

Start: 3595293

End: 3596654

Strand: Direct

Name: cydA [H]

Synonym: mlr4524

Alternate gene names: 13473805

Gene position: 3595293-3596654 (Clockwise)

Preceding gene: 13473802

Following gene: 13473806

Centisome position: 51.1

GC content: 64.46

Gene sequence:

>1362_bases
ATGGACCCGCTCATACTGTCGCGCATCCAGTTCGGCGCGAATATTTCGTTTCATATTCTGTTTCCGACGATCACCATTGC
ACTTGGCTGGGTGCTGCTGTTCTTCAAGCTGCGCTACAACGCGACCAACGATTCCGCCTGGATGCGTGCCTATTTCACCT
GGGTGAAGGTGTTCGCGCTGTCCTTCGCCATGGGCGTGGTCTCCGGCGTCACCATGAGCTTCCAGTTCGGCACCAACTGG
CCGCGCTATATGGAAACGGTCGGCAACATCGCCGGGCCGCTGCTGGCCTATGAAGTGCTGACCGCCTTCTTCCTTGAGGC
GGCCTTCCTCGGCATCATGCTGTTCGGCTTCCGCCGCGTCTCCAACCGCGTCCACACGCTGGCGACTGTGCTGGTCGCCG
GCGGCACAACCTTGTCCGCCTTCTGGATCATCGCGCTGAATTCCTGGATGCAGACGCCGGCCGGCTTCGAGATGATTGAC
GGCAAGGCGCATGCCGTCGACTGGTGGGCCATCGTCTTCAACCCGTCCATGCCTTACCGCCTCGTCCACATGCTGCTTGC
GTCGGGTCTCACGGTCTCGTTCCTGATATCGGGCCTGTCGGCGCTGCGTTACCTTAACGGCGACCGCTCGGAATCGATGC
GGAAGGCGCTGCGCACCGGCGTCTTCACCGCCGCGATCCTGATCCCGATCCAGATCTTTGCCGGCGACCAGCATGGGCTG
AACACGCTGGAGCACCAGCCGCAGAAGATCGCCGCCATGGAGGCCAACTGGAACACCGGCCCCAACGTGCCGCTGGTGCT
GTTCGCGCTGCCCGACGAGGCGGCCAGGGAAAACCGGTTCGAGATCACCATTCCCGACGGCGCCAGCCTGGTGCTGCGGC
ACTCGACCAGCGGCGTCGTGCCGGGGCTGGACGCCTTTCCCGGCAACCATCCGCCGGTCTTCCCGGTGTTCTGGGGTTTT
CGCATCATGGTCGGCACCGGCCTTTTGATGCTTGCCGTCTCCTGGTCGGCCGCCTTCTTCCTCAAGCGCCGGCACAGCCT
GCCCAAGCCGCTCGCCATGCTGATGGTGCCGATGGCGCTGTCGGGCTGGCTGGCGACGCTGGCCGGCTGGTACACGACCG
AGATAGGCCGCCAGCCCTGGCTGGTCACCGGCGTGCTGAAAACCGCCGATGCCGTCGGCCCGGTGGCCGGCAGCCATGTC
GCGCTGACGCTGGCCGTCTATCTCATCCTCTACGTGCTGTTGCTGATCGCCTATCTCGGCGTGCTGGTGCATCTGGCGCT
GAAAGCGGCGAAGGACGGCGATTCATCGCCGCTGCCGGGAGTGATGAAAGCAGCCATGTCGCAGCCGGCCGCGGGCGAGT
AG

Upstream 100 bases:

>100_bases
AATTGTCCTGTGGCGTTCAGCCTCGCGGCAGGACGCCGCTTTGACCTGAACCGGCTTCGGGCCTATCCTTCGCCAGTACT
TCCAGCAGCCGGAGCCCGCC

Downstream 100 bases:

>100_bases
GAGAAGAAAAATGACCTTCGACTGGCCAACCGCTCTGCCGCTGATCTTCGCCGGCCTGATGGGCCTGGCCATCCTGATCT
ATGTCATTCTCGACGGCTTC

Product: quinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MDPLILSRIQFGANISFHILFPTITIALGWVLLFFKLRYNATNDSAWMRAYFTWVKVFALSFAMGVVSGVTMSFQFGTNW
PRYMETVGNIAGPLLAYEVLTAFFLEAAFLGIMLFGFRRVSNRVHTLATVLVAGGTTLSAFWIIALNSWMQTPAGFEMID
GKAHAVDWWAIVFNPSMPYRLVHMLLASGLTVSFLISGLSALRYLNGDRSESMRKALRTGVFTAAILIPIQIFAGDQHGL
NTLEHQPQKIAAMEANWNTGPNVPLVLFALPDEAARENRFEITIPDGASLVLRHSTSGVVPGLDAFPGNHPPVFPVFWGF
RIMVGTGLLMLAVSWSAAFFLKRRHSLPKPLAMLMVPMALSGWLATLAGWYTTEIGRQPWLVTGVLKTADAVGPVAGSHV
ALTLAVYLILYVLLLIAYLGVLVHLALKAAKDGDSSPLPGVMKAAMSQPAAGE

Sequences:

>Translated_453_residues
MDPLILSRIQFGANISFHILFPTITIALGWVLLFFKLRYNATNDSAWMRAYFTWVKVFALSFAMGVVSGVTMSFQFGTNW
PRYMETVGNIAGPLLAYEVLTAFFLEAAFLGIMLFGFRRVSNRVHTLATVLVAGGTTLSAFWIIALNSWMQTPAGFEMID
GKAHAVDWWAIVFNPSMPYRLVHMLLASGLTVSFLISGLSALRYLNGDRSESMRKALRTGVFTAAILIPIQIFAGDQHGL
NTLEHQPQKIAAMEANWNTGPNVPLVLFALPDEAARENRFEITIPDGASLVLRHSTSGVVPGLDAFPGNHPPVFPVFWGF
RIMVGTGLLMLAVSWSAAFFLKRRHSLPKPLAMLMVPMALSGWLATLAGWYTTEIGRQPWLVTGVLKTADAVGPVAGSHV
ALTLAVYLILYVLLLIAYLGVLVHLALKAAKDGDSSPLPGVMKAAMSQPAAGE
>Mature_453_residues
MDPLILSRIQFGANISFHILFPTITIALGWVLLFFKLRYNATNDSAWMRAYFTWVKVFALSFAMGVVSGVTMSFQFGTNW
PRYMETVGNIAGPLLAYEVLTAFFLEAAFLGIMLFGFRRVSNRVHTLATVLVAGGTTLSAFWIIALNSWMQTPAGFEMID
GKAHAVDWWAIVFNPSMPYRLVHMLLASGLTVSFLISGLSALRYLNGDRSESMRKALRTGVFTAAILIPIQIFAGDQHGL
NTLEHQPQKIAAMEANWNTGPNVPLVLFALPDEAARENRFEITIPDGASLVLRHSTSGVVPGLDAFPGNHPPVFPVFWGF
RIMVGTGLLMLAVSWSAAFFLKRRHSLPKPLAMLMVPMALSGWLATLAGWYTTEIGRQPWLVTGVLKTADAVGPVAGSHV
ALTLAVYLILYVLLLIAYLGVLVHLALKAAKDGDSSPLPGVMKAAMSQPAAGE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=507, Percent_Identity=30.7692307692308, Blast_Score=195, Evalue=6e-51,
Organism=Escherichia coli, GI87081779, Length=525, Percent_Identity=29.9047619047619, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49428; Mature: 49428

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLILSRIQFGANISFHILFPTITIALGWVLLFFKLRYNATNDSAWMRAYFTWVKVFAL
CCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SFAMGVVSGVTMSFQFGTNWPRYMETVGNIAGPLLAYEVLTAFFLEAAFLGIMLFGFRRV
HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNRVHTLATVLVAGGTTLSAFWIIALNSWMQTPAGFEMIDGKAHAVDWWAIVFNPSMPYR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEEEEECCCCHHH
LVHMLLASGLTVSFLISGLSALRYLNGDRSESMRKALRTGVFTAAILIPIQIFAGDQHGL
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
NTLEHQPQKIAAMEANWNTGPNVPLVLFALPDEAARENRFEITIPDGASLVLRHSTSGVV
CHHHCCCHHHEEEECCCCCCCCCCEEEEECCCHHHHCCCEEEEECCCCEEEEEECCCCCC
PGLDAFPGNHPPVFPVFWGFRIMVGTGLLMLAVSWSAAFFLKRRHSLPKPLAMLMVPMAL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SGWLATLAGWYTTEIGRQPWLVTGVLKTADAVGPVAGSHVALTLAVYLILYVLLLIAYLG
HHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLVHLALKAAKDGDSSPLPGVMKAAMSQPAAGE
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MDPLILSRIQFGANISFHILFPTITIALGWVLLFFKLRYNATNDSAWMRAYFTWVKVFAL
CCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SFAMGVVSGVTMSFQFGTNWPRYMETVGNIAGPLLAYEVLTAFFLEAAFLGIMLFGFRRV
HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNRVHTLATVLVAGGTTLSAFWIIALNSWMQTPAGFEMIDGKAHAVDWWAIVFNPSMPYR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEEEEECCCCHHH
LVHMLLASGLTVSFLISGLSALRYLNGDRSESMRKALRTGVFTAAILIPIQIFAGDQHGL
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
NTLEHQPQKIAAMEANWNTGPNVPLVLFALPDEAARENRFEITIPDGASLVLRHSTSGVV
CHHHCCCHHHEEEECCCCCCCCCCEEEEECCCHHHHCCCEEEEECCCCEEEEEECCCCCC
PGLDAFPGNHPPVFPVFWGFRIMVGTGLLMLAVSWSAAFFLKRRHSLPKPLAMLMVPMAL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
SGWLATLAGWYTTEIGRQPWLVTGVLKTADAVGPVAGSHVALTLAVYLILYVLLLIAYLG
HHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VLVHLALKAAKDGDSSPLPGVMKAAMSQPAAGE
HHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]