BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is lolD [H]

Identifier: 13473761

GI number: 13473761

Start: 3547845

End: 3548543

Strand: Direct

Name: lolD [H]

Synonym: mlr4463

Alternate gene names: 13473761

Gene position: 3547845-3548543 (Clockwise)

Preceding gene: 13473760

Following gene: 13473762

Centisome position: 50.42

GC content: 66.95

Gene sequence:

>699_bases
ATGGGAGGATCGCCCGTGGCTGAAACGCTCGTCGTCGCAAAGGGCCTCGGACGAGACTTCCGGGATGGCAACGCCGGCCG
GATCAGCGTGCTGCGCGATGTCGACTGCGAGATCGCGTCGGGTGCACGCATCGCTCTCGTCGGACCTTCCGGCAGCGGCA
AGACGACACTGCTGCATATTCTCGGCGGCCTCGACCGGCCGACGGCCGGTACCGTCGAATGGCCGGGACTGGGTTCATTC
GAAACTCTGAGGCCACGCCAGATCGGCTTCGTGTTCCAGTCGCCCAGCCTGTTTCCTGCCCTCACCGCGGTCCAGAATGT
CGGCCTGCCCATGCTGCTGGCCGGCGAGAATGTCGGCGCCAGCGACATCGGGGCATCGCTTCTGCAATCGTTCGGCCTTG
GCGAACTCGGCGATAAGCTGCCGGAGGAACTGTCCGGCGGCCAGGCCCAGCGCATTGCCATGGCGCGCGCTCTGGCCATA
GGTCCGAAGCTTGTGCTGGCCGATGAGCCGACGGGGCAGCTGGACAGCCGAACGGCGCTGCGCTTCTTCGACGCCGTGTT
CGACCGTCTGGAAGGCACCGACATCGCCCTGGTCGTAGCCACACATGACGAAGCCGTGGCCAACCGCATGGCGACGCGCT
GGACGATGGATCACGGCCGGCTCACCACAGGGCATCGGCCCGGGGCGGCTGCCGCATGA

Upstream 100 bases:

>100_bases
GCCCATTTCGAGGCGCGGCGCGACGCCGGACTGGCGACGCTGCTGGCCACCCACAGCAAGGTGCTGGCGCAGAGGGCCGA
TCGCATCATCAGGCTGAAGG

Downstream 100 bases:

>100_bases
TCATCCTGCTGTGGATTCGTGGTGTGCTTGCCCGCCGCTTCCTGCGCGTGGCCGGTGCCGCCGCCGGCATCGCGCTGACG
GTCGCTCTGCTCGCCACGAT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MGGSPVAETLVVAKGLGRDFRDGNAGRISVLRDVDCEIASGARIALVGPSGSGKTTLLHILGGLDRPTAGTVEWPGLGSF
ETLRPRQIGFVFQSPSLFPALTAVQNVGLPMLLAGENVGASDIGASLLQSFGLGELGDKLPEELSGGQAQRIAMARALAI
GPKLVLADEPTGQLDSRTALRFFDAVFDRLEGTDIALVVATHDEAVANRMATRWTMDHGRLTTGHRPGAAAA

Sequences:

>Translated_232_residues
MGGSPVAETLVVAKGLGRDFRDGNAGRISVLRDVDCEIASGARIALVGPSGSGKTTLLHILGGLDRPTAGTVEWPGLGSF
ETLRPRQIGFVFQSPSLFPALTAVQNVGLPMLLAGENVGASDIGASLLQSFGLGELGDKLPEELSGGQAQRIAMARALAI
GPKLVLADEPTGQLDSRTALRFFDAVFDRLEGTDIALVVATHDEAVANRMATRWTMDHGRLTTGHRPGAAAA
>Mature_231_residues
GGSPVAETLVVAKGLGRDFRDGNAGRISVLRDVDCEIASGARIALVGPSGSGKTTLLHILGGLDRPTAGTVEWPGLGSFE
TLRPRQIGFVFQSPSLFPALTAVQNVGLPMLLAGENVGASDIGASLLQSFGLGELGDKLPEELSGGQAQRIAMARALAIG
PKLVLADEPTGQLDSRTALRFFDAVFDRLEGTDIALVVATHDEAVANRMATRWTMDHGRLTTGHRPGAAAA

Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=208, Percent_Identity=33.1730769230769, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27477115, Length=179, Percent_Identity=31.2849162011173, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI156105685, Length=187, Percent_Identity=33.1550802139037, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=31.1557788944724, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9955968, Length=202, Percent_Identity=30.6930693069307, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI9955966, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI45243524, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI27436953, Length=207, Percent_Identity=27.536231884058, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI6005701, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592915, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592898, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592978, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592956, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592971, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI105990541, Length=189, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592964, Length=160, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI153792144, Length=162, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87081834, Length=225, Percent_Identity=40.4444444444444, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1786703, Length=225, Percent_Identity=42.2222222222222, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1788761, Length=197, Percent_Identity=42.1319796954315, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=36.7256637168142, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787105, Length=206, Percent_Identity=38.3495145631068, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=38.5786802030457, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788225, Length=219, Percent_Identity=36.5296803652968, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789672, Length=210, Percent_Identity=32.3809523809524, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87081709, Length=201, Percent_Identity=32.3383084577114, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1787089, Length=204, Percent_Identity=34.8039215686275, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786398, Length=196, Percent_Identity=37.2448979591837, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1786872, Length=206, Percent_Identity=34.4660194174757, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1789873, Length=208, Percent_Identity=36.5384615384615, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082267, Length=196, Percent_Identity=33.6734693877551, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=33.0143540669856, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787712, Length=206, Percent_Identity=31.0679611650485, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788450, Length=203, Percent_Identity=35.9605911330049, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786253, Length=180, Percent_Identity=34.4444444444444, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787164, Length=184, Percent_Identity=37.5, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786563, Length=194, Percent_Identity=32.9896907216495, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789032, Length=194, Percent_Identity=32.4742268041237, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787370, Length=204, Percent_Identity=30.3921568627451, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1789891, Length=233, Percent_Identity=31.7596566523605, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786698, Length=190, Percent_Identity=31.5789473684211, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790544, Length=229, Percent_Identity=31.0043668122271, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789962, Length=198, Percent_Identity=31.8181818181818, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI145693107, Length=200, Percent_Identity=34.5, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787758, Length=219, Percent_Identity=29.2237442922374, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790525, Length=215, Percent_Identity=26.9767441860465, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787500, Length=193, Percent_Identity=29.5336787564767, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI48994997, Length=194, Percent_Identity=33.5051546391753, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789593, Length=200, Percent_Identity=28, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788053, Length=180, Percent_Identity=35.5555555555556, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790162, Length=203, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788506, Length=235, Percent_Identity=30.2127659574468, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787547, Length=211, Percent_Identity=27.9620853080569, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789963, Length=202, Percent_Identity=30.1980198019802, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790534, Length=210, Percent_Identity=30.4761904761905, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081782, Length=208, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788165, Length=178, Percent_Identity=32.5842696629214, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI48994883, Length=218, Percent_Identity=27.0642201834862, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788644, Length=216, Percent_Identity=31.0185185185185, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787759, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788210, Length=204, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786319, Length=186, Percent_Identity=31.7204301075269, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789864, Length=221, Percent_Identity=23.9819004524887, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=26.1061946902655, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787772, Length=186, Percent_Identity=27.9569892473118, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790190, Length=156, Percent_Identity=32.0512820512821, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87082268, Length=220, Percent_Identity=26.8181818181818, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1786981, Length=120, Percent_Identity=35.8333333333333, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=203, Percent_Identity=34.9753694581281, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17510237, Length=207, Percent_Identity=27.0531400966184, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71992290, Length=195, Percent_Identity=32.3076923076923, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71992285, Length=199, Percent_Identity=33.6683417085427, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71984940, Length=156, Percent_Identity=36.5384615384615, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=202, Percent_Identity=35.1485148514851, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=165, Percent_Identity=31.5151515151515, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=164, Percent_Identity=35.3658536585366, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=164, Percent_Identity=35.3658536585366, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=164, Percent_Identity=35.3658536585366, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=195, Percent_Identity=32.3076923076923, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=165, Percent_Identity=33.9393939393939, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17511077, Length=181, Percent_Identity=27.6243093922652, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=206, Percent_Identity=33.0097087378641, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=158, Percent_Identity=35.4430379746835, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=171, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=164, Percent_Identity=33.5365853658537, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=162, Percent_Identity=30.8641975308642, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=213, Percent_Identity=29.5774647887324, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659289, Length=194, Percent_Identity=35.0515463917526, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24653245, Length=161, Percent_Identity=34.7826086956522, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281363262, Length=161, Percent_Identity=34.7826086956522, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24666092, Length=200, Percent_Identity=28.5, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24641565, Length=193, Percent_Identity=32.6424870466321, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24581191, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24581189, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24581193, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24581195, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI85726357, Length=212, Percent_Identity=29.2452830188679, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI23397593, Length=198, Percent_Identity=31.3131313131313, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552199, Length=190, Percent_Identity=33.1578947368421, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581407, Length=190, Percent_Identity=33.1578947368421, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015854
- InterPro:   IPR003593
- InterPro:   IPR011924 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24106; Mature: 23975

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGSPVAETLVVAKGLGRDFRDGNAGRISVLRDVDCEIASGARIALVGPSGSGKTTLLHI
CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEECCCCEEEEECCCCCCCEEHEEE
LGGLDRPTAGTVEWPGLGSFETLRPRQIGFVFQSPSLFPALTAVQNVGLPMLLAGENVGA
CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCH
SDIGASLLQSFGLGELGDKLPEELSGGQAQRIAMARALAIGPKLVLADEPTGQLDSRTAL
HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
RFFDAVFDRLEGTDIALVVATHDEAVANRMATRWTMDHGRLTTGHRPGAAAA
HHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHEECCCCEEECCCCCCCCCC
>Mature Secondary Structure 
GGSPVAETLVVAKGLGRDFRDGNAGRISVLRDVDCEIASGARIALVGPSGSGKTTLLHI
CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEECCCCEEEEECCCCCCCEEHEEE
LGGLDRPTAGTVEWPGLGSFETLRPRQIGFVFQSPSLFPALTAVQNVGLPMLLAGENVGA
CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCH
SDIGASLLQSFGLGELGDKLPEELSGGQAQRIAMARALAIGPKLVLADEPTGQLDSRTAL
HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
RFFDAVFDRLEGTDIALVVATHDEAVANRMATRWTMDHGRLTTGHRPGAAAA
HHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHEECCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA