| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is ygfF [H]
Identifier: 13473632
GI number: 13473632
Start: 3420341
End: 3421096
Strand: Reverse
Name: ygfF [H]
Synonym: mll4297
Alternate gene names: 13473632
Gene position: 3421096-3420341 (Counterclockwise)
Preceding gene: 13473633
Following gene: 13473631
Centisome position: 48.62
GC content: 67.33
Gene sequence:
>756_bases ATGAGCGAGGCGCAGAAGGTCCTGCTGGTCACCGGCGGCAGCCGCGGCATCGGCGCCGCGGTCTGCCGGCTCGGGGCGAA GGCCGGCTATCGCGTCGCGGTCAACTACGCCTCGAATAGGGCTGCCGCCGACGCCCTGGTTGCCGAGATCAAGGCTGCCG GCGGCGACGCTTTCGCGGTCAAGGGCGATGTCGGCGGCGAGGCCGACATCATCGCCATCTTCGAGGCCGTCGACCGCAGC TATGGCCGGCTTGACGCCTTCGTCAACAATGCCGGCATTGTCGATGCCAAGGCGCGCGTCGACGAGATGAGCGCGGCACG GCTCGAACGCATGATGCGCATCAACGTCGTCGGTTCCATTCTGTGCGCCCGTGAGGCGGTCAAGCGCATGTCGACCCGCC ATGGCGGCAAGGGTGGAGCGATCGTCAACATCTCCTCGGCCGCGGCGGTGCTGGGCGCGCCGGACAATTATGTCGACTAT GCCGCCTCCAAGGGCGCCATCGACACGTTCACCGTCGGGCTGGCCCGCGAGGTGGCGCTGGAAGGCATCCGCGTCAACGC GGTGCGGCCGGGCATCATCGACACCGACATCCATGCTTCCGGCGGACAGCCCGATAGGGTGGCGCTGATCCAGGACACGC TGCCGATGAAAAGGGCCGGCACCGCCGATGAAGTCGCGGCTGCGGTTCTCTATCTTCTATCCGACGCAGCGTCCTATACG ACGGGCGCGATCCTGAATGTCAGCGGCGGCCGCTGA
Upstream 100 bases:
>100_bases TGCCGGATCTCGGTCCGGCGCTTCGTCAGTCCCCGGCCTATGGCGGTGGCGGATTTTCGAAAGTGCCGTGGGATGTGTTC ACGCTGAAGGGATGCCAGGA
Downstream 100 bases:
>100_bases GCGCTCATGCAGTTCGAGCATGATGTTATCCGAAAACCGCGTCACACTTTTCGGCATCATGCTCAAAACAGAAGGACACT ATCATGGCTTATGACGTCGT
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSEAQKVLLVTGGSRGIGAAVCRLGAKAGYRVAVNYASNRAAADALVAEIKAAGGDAFAVKGDVGGEADIIAIFEAVDRS YGRLDAFVNNAGIVDAKARVDEMSAARLERMMRINVVGSILCAREAVKRMSTRHGGKGGAIVNISSAAAVLGAPDNYVDY AASKGAIDTFTVGLAREVALEGIRVNAVRPGIIDTDIHASGGQPDRVALIQDTLPMKRAGTADEVAAAVLYLLSDAASYT TGAILNVSGGR
Sequences:
>Translated_251_residues MSEAQKVLLVTGGSRGIGAAVCRLGAKAGYRVAVNYASNRAAADALVAEIKAAGGDAFAVKGDVGGEADIIAIFEAVDRS YGRLDAFVNNAGIVDAKARVDEMSAARLERMMRINVVGSILCAREAVKRMSTRHGGKGGAIVNISSAAAVLGAPDNYVDY AASKGAIDTFTVGLAREVALEGIRVNAVRPGIIDTDIHASGGQPDRVALIQDTLPMKRAGTADEVAAAVLYLLSDAASYT TGAILNVSGGR >Mature_250_residues SEAQKVLLVTGGSRGIGAAVCRLGAKAGYRVAVNYASNRAAADALVAEIKAAGGDAFAVKGDVGGEADIIAIFEAVDRSY GRLDAFVNNAGIVDAKARVDEMSAARLERMMRINVVGSILCAREAVKRMSTRHGGKGGAIVNISSAAAVLGAPDNYVDYA ASKGAIDTFTVGLAREVALEGIRVNAVRPGIIDTDIHASGGQPDRVALIQDTLPMKRAGTADEVAAAVLYLLSDAASYTT GAILNVSGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=36.9477911646586, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=31.7269076305221, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI59889578, Length=193, Percent_Identity=33.160621761658, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=31.5789473684211, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=28.3464566929134, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=30.241935483871, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=33.0049261083744, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=29.2490118577075, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.0395256916996, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=28.1746031746032, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=27.1653543307087, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI224922801, Length=184, Percent_Identity=31.5217391304348, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI66933014, Length=176, Percent_Identity=31.25, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=53.469387755102, Blast_Score=266, Evalue=8e-73, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=33.8775510204082, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=31.8548387096774, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=33.4615384615385, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=34.5238095238095, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=36.3265306122449, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=29.4820717131474, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=34.1463414634146, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=29.1497975708502, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.952380952381, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=27.2357723577236, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787891, Length=252, Percent_Identity=28.968253968254, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=38.2113821138211, Blast_Score=138, Evalue=2e-33, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=35.0393700787402, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=33.984375, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=34.6613545816733, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=34.0080971659919, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=32.8125, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=30.3030303030303, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=28.9156626506024, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=31.3725490196078, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=28.2442748091603, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562904, Length=242, Percent_Identity=27.6859504132231, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=30.7984790874525, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=28.8389513108614, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17544670, Length=249, Percent_Identity=27.710843373494, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=28.8461538461538, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17531453, Length=204, Percent_Identity=32.3529411764706, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=26.2948207171315, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=32.6829268292683, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=28.2442748091603, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=27.6923076923077, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=26.8199233716475, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17563726, Length=242, Percent_Identity=28.5123966942149, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=28.968253968254, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=27.6923076923077, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=31.219512195122, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=27.3764258555133, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI72001658, Length=218, Percent_Identity=27.9816513761468, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=26.0536398467433, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561272, Length=212, Percent_Identity=28.7735849056604, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17568967, Length=241, Percent_Identity=29.8755186721992, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=263, Percent_Identity=26.615969581749, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=152, Percent_Identity=30.2631578947368, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=37.984496124031, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24644339, Length=261, Percent_Identity=36.3984674329502, Blast_Score=124, Evalue=5e-29, Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=36.71875, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=36.2934362934363, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24644337, Length=204, Percent_Identity=32.3529411764706, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=30.9803921568627, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=32.3886639676113, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24648693, Length=242, Percent_Identity=30.9917355371901, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21355889, Length=242, Percent_Identity=30.9917355371901, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24641232, Length=235, Percent_Identity=31.9148936170213, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI281364494, Length=242, Percent_Identity=31.404958677686, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI17737361, Length=234, Percent_Identity=32.0512820512821, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI28571387, Length=237, Percent_Identity=29.957805907173, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007236, Length=237, Percent_Identity=29.1139240506329, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24641388, Length=239, Percent_Identity=31.7991631799163, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=28.740157480315, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24663911, Length=237, Percent_Identity=28.6919831223629, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=27.8350515463918, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007234, Length=244, Percent_Identity=27.0491803278689, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI18859837, Length=201, Percent_Identity=32.8358208955224, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24665264, Length=220, Percent_Identity=29.0909090909091, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24665243, Length=212, Percent_Identity=30.6603773584906, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI221331218, Length=212, Percent_Identity=30.6603773584906, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25693; Mature: 25561
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEAQKVLLVTGGSRGIGAAVCRLGAKAGYRVAVNYASNRAAADALVAEIKAAGGDAFAV CCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEE KGDVGGEADIIAIFEAVDRSYGRLDAFVNNAGIVDAKARVDEMSAARLERMMRINVVGSI ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH LCAREAVKRMSTRHGGKGGAIVNISSAAAVLGAPDNYVDYAASKGAIDTFTVGLAREVAL HHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHH EGIRVNAVRPGIIDTDIHASGGQPDRVALIQDTLPMKRAGTADEVAAAVLYLLSDAASYT CCEEEEEECCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC TGAILNVSGGR CCEEEECCCCC >Mature Secondary Structure SEAQKVLLVTGGSRGIGAAVCRLGAKAGYRVAVNYASNRAAADALVAEIKAAGGDAFAV CCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEE KGDVGGEADIIAIFEAVDRSYGRLDAFVNNAGIVDAKARVDEMSAARLERMMRINVVGSI ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH LCAREAVKRMSTRHGGKGGAIVNISSAAAVLGAPDNYVDYAASKGAIDTFTVGLAREVAL HHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHHH EGIRVNAVRPGIIDTDIHASGGQPDRVALIQDTLPMKRAGTADEVAAAVLYLLSDAASYT CCEEEEEECCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC TGAILNVSGGR CCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]