| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is dcp [H]
Identifier: 13473513
GI number: 13473513
Start: 3307611
End: 3309665
Strand: Direct
Name: dcp [H]
Synonym: mlr4139
Alternate gene names: 13473513
Gene position: 3307611-3309665 (Clockwise)
Preceding gene: 13473512
Following gene: 13473514
Centisome position: 47.01
GC content: 63.89
Gene sequence:
>2055_bases ATGCCCTCCACGAAAACCGTCGACATCGCCGCCCATCCGCTGACCGCGTGGCAAGGGCCGCTCGGCCTGCCCGACTTTGC CCATATTGGCGACAGCGATTTTTCGCCGGTCTTCGACGCGGCGCTAACGGCGCATGAGGCGGAGATCGATGCGATTGCCG GCAACAAGGACGCGCCGACGATCGAGAACACGCTTGCCGCGCTGGAACTCGGCGGCGAGGCGCTCGATCATGTCTCGTCG ATCTTCTGGTGCCGCGCCGGCGCTTACACCAACGAGACCATCCAGGCGCTGGAGCGCGACATCTCGCCGAAGATGTCCAG GCATTTTTCGGCGATATCGATGAACGAGAAGCTGTTTGCCCGCATCGACGACCTCTACCAGCGTCGCGAGAGCCTTGACC TCGACGCCGAGACCCTGCGGGTGCTGGAGAAGACCTGGAAGGGTTTCGTCCGCTCCGGCGCCAAGCTCGATGCCGAGGGC AAGAAGCGGCTGGCCAGGATCAATGAAGAGCTGTCTTCGCTCGGTACGGCTTTCGGCCAGAACGTGCTGGCCGATGAGCG CGACTGGGCGCTGTTCCTCGACGAGGCCGACCTTGCCGGCCTGCCGGATTTCCTGAAAAGCTCGATGGCAGAGGCGGCCG AGATGCGCGGCCAGAAGGGCCGCTACGCCGTCACTTTGTCGCGCTCGATCTACGAGCCGTTCACGACCTTCTCGGAACGC CGCGACCTGCGCGAGATCGCCTTCAAAGCTTTCACCATGCGCGGCCAGAATGGCGGCGCCAGCGACAACACCGAAGTCGT GCGCGACATGCTGAAACTGCGCGCCGAAAAGGCCGAGCTGCTCGGCTACGCCTCCTTCGCCGCGCTGAAGCTCGACGACA CCATGGCCAAGACGCCGAAGGCGGTGCACGACCTGCTCGATCCGGTCTGGGAAAAGGCGCTGGAAAAGGCCGCCGCCGAC CAGAAGGAATTGGAGCGCCTGGCGGCGCAAGCCGGCAGCAACGAGAAATTCGCCGCCTGGGACTGGCGCTTCTACCAGGA GAAGCTGCGCGCGGAAAAATTCGCCTTCGATGAGGCGGAGCTGAAACCCTATCTGCAGCTCGACCGGGTGATCGACGCCT GCTTCGACGTCGCGACCAAACTGTTCGGCATCACCTTCGAGGAGAAAAAGGGCATCGTCGCCTGGCACCCGGACGCGCGC GTCTTCGTGGTGAAAAATGCCGATGGCAGCGAGCGCGCACTGTTCCTGGCCGATTATTTCGCGCGGCCCTCGAAGCGTTC CGGCGCCTGGATGAGCGCGCTGAAGTCCGGCTACAAACTTGGCAACGGCTCGAAGCCGGTGATCTACAACATCATGAACT TCGCCAAGCCGCCGGCAGGCGAACCGGCATTGCTGTCGGTCGACGAGGCGAAGACTCTGTTCCACGAATTCGGCCACGCG CTGCACGGCATGCTGACCGACGTCACCTGGCCGTCGGTTGCGGGCACCTCGGTCAGCCGCGATTTTGTCGAACTGCCCTC GCAGCTCTACGAGCACTGGCTGACGGTGCCGGCGGTGCTGGAGAAGCACGCGCTGCACGTCAAGACCGGCAAGCCGATGC CGAAGGCGCTGCTCGACAAGATGCTGGCCACGCGCACCTTCGGCGCCGGCTTCGCCACCGTCGAGTTTACGTCTTCCGCC TTGATCGACATGGCCTATCACGCTCGGCCAGATGCACCGGCCGAACCGCTTCGTTTCGAAGCCGAAACGTTGGAAAAACT CGACATGCCCGACACCATCGCGATGCGCCACCGCACCCCGCATTTCGGCCATGTCTTCTCGGGCGACGGCTATTCGGCCG GCTACTATTCCTACATGTGGTCGGAAGTGCTGGACGCCGACGCCTTCGCCGCCTTCGAGGAGACCGGCGATCCCTTCAAC CCGGCACTGGCCGAACGGCTGCGCAAGAACATCTACGCCGCCGGCGGCTCGAAGGACCCCGAAGAGCTCTACACGGCCTT TCGCGGCAAGATGCCGTCGCCGGAGGCGATGATGGTGAAGCGCGGATTGGTGTAG
Upstream 100 bases:
>100_bases AGCCTATTGAGGCGGGTCGGCCAACTGCCATATTGCGGGCACGCGGACCGCGCCCTACATCGGTGACACCCTCCTCCTTG ACGCCAGCGAAAGACCCTTC
Downstream 100 bases:
>100_bases CGCCTCTTCCTTCTCCCCTTGCGAGAGAAGCTGGATCGGTGCGCAGCGCCGAGACGGATGAGCGACTATCTGAGGTGTCA AGTTGCATTTGCGAATTCGT
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 684; Mature: 683
Protein sequence:
>684_residues MPSTKTVDIAAHPLTAWQGPLGLPDFAHIGDSDFSPVFDAALTAHEAEIDAIAGNKDAPTIENTLAALELGGEALDHVSS IFWCRAGAYTNETIQALERDISPKMSRHFSAISMNEKLFARIDDLYQRRESLDLDAETLRVLEKTWKGFVRSGAKLDAEG KKRLARINEELSSLGTAFGQNVLADERDWALFLDEADLAGLPDFLKSSMAEAAEMRGQKGRYAVTLSRSIYEPFTTFSER RDLREIAFKAFTMRGQNGGASDNTEVVRDMLKLRAEKAELLGYASFAALKLDDTMAKTPKAVHDLLDPVWEKALEKAAAD QKELERLAAQAGSNEKFAAWDWRFYQEKLRAEKFAFDEAELKPYLQLDRVIDACFDVATKLFGITFEEKKGIVAWHPDAR VFVVKNADGSERALFLADYFARPSKRSGAWMSALKSGYKLGNGSKPVIYNIMNFAKPPAGEPALLSVDEAKTLFHEFGHA LHGMLTDVTWPSVAGTSVSRDFVELPSQLYEHWLTVPAVLEKHALHVKTGKPMPKALLDKMLATRTFGAGFATVEFTSSA LIDMAYHARPDAPAEPLRFEAETLEKLDMPDTIAMRHRTPHFGHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGDPFN PALAERLRKNIYAAGGSKDPEELYTAFRGKMPSPEAMMVKRGLV
Sequences:
>Translated_684_residues MPSTKTVDIAAHPLTAWQGPLGLPDFAHIGDSDFSPVFDAALTAHEAEIDAIAGNKDAPTIENTLAALELGGEALDHVSS IFWCRAGAYTNETIQALERDISPKMSRHFSAISMNEKLFARIDDLYQRRESLDLDAETLRVLEKTWKGFVRSGAKLDAEG KKRLARINEELSSLGTAFGQNVLADERDWALFLDEADLAGLPDFLKSSMAEAAEMRGQKGRYAVTLSRSIYEPFTTFSER RDLREIAFKAFTMRGQNGGASDNTEVVRDMLKLRAEKAELLGYASFAALKLDDTMAKTPKAVHDLLDPVWEKALEKAAAD QKELERLAAQAGSNEKFAAWDWRFYQEKLRAEKFAFDEAELKPYLQLDRVIDACFDVATKLFGITFEEKKGIVAWHPDAR VFVVKNADGSERALFLADYFARPSKRSGAWMSALKSGYKLGNGSKPVIYNIMNFAKPPAGEPALLSVDEAKTLFHEFGHA LHGMLTDVTWPSVAGTSVSRDFVELPSQLYEHWLTVPAVLEKHALHVKTGKPMPKALLDKMLATRTFGAGFATVEFTSSA LIDMAYHARPDAPAEPLRFEAETLEKLDMPDTIAMRHRTPHFGHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGDPFN PALAERLRKNIYAAGGSKDPEELYTAFRGKMPSPEAMMVKRGLV >Mature_683_residues PSTKTVDIAAHPLTAWQGPLGLPDFAHIGDSDFSPVFDAALTAHEAEIDAIAGNKDAPTIENTLAALELGGEALDHVSSI FWCRAGAYTNETIQALERDISPKMSRHFSAISMNEKLFARIDDLYQRRESLDLDAETLRVLEKTWKGFVRSGAKLDAEGK KRLARINEELSSLGTAFGQNVLADERDWALFLDEADLAGLPDFLKSSMAEAAEMRGQKGRYAVTLSRSIYEPFTTFSERR DLREIAFKAFTMRGQNGGASDNTEVVRDMLKLRAEKAELLGYASFAALKLDDTMAKTPKAVHDLLDPVWEKALEKAAADQ KELERLAAQAGSNEKFAAWDWRFYQEKLRAEKFAFDEAELKPYLQLDRVIDACFDVATKLFGITFEEKKGIVAWHPDARV FVVKNADGSERALFLADYFARPSKRSGAWMSALKSGYKLGNGSKPVIYNIMNFAKPPAGEPALLSVDEAKTLFHEFGHAL HGMLTDVTWPSVAGTSVSRDFVELPSQLYEHWLTVPAVLEKHALHVKTGKPMPKALLDKMLATRTFGAGFATVEFTSSAL IDMAYHARPDAPAEPLRFEAETLEKLDMPDTIAMRHRTPHFGHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGDPFNP ALAERLRKNIYAAGGSKDPEELYTAFRGKMPSPEAMMVKRGLV
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=592, Percent_Identity=31.0810810810811, Blast_Score=254, Evalue=1e-67, Organism=Homo sapiens, GI14149738, Length=609, Percent_Identity=28.4072249589491, Blast_Score=226, Evalue=6e-59, Organism=Homo sapiens, GI156105687, Length=588, Percent_Identity=27.5510204081633, Blast_Score=177, Evalue=2e-44, Organism=Escherichia coli, GI1787819, Length=670, Percent_Identity=37.910447761194, Blast_Score=433, Evalue=1e-122, Organism=Escherichia coli, GI1789913, Length=676, Percent_Identity=34.0236686390533, Blast_Score=355, Evalue=8e-99, Organism=Caenorhabditis elegans, GI32565901, Length=611, Percent_Identity=22.7495908346972, Blast_Score=96, Evalue=6e-20, Organism=Saccharomyces cerevisiae, GI6319793, Length=646, Percent_Identity=26.9349845201238, Blast_Score=203, Evalue=6e-53, Organism=Saccharomyces cerevisiae, GI6322715, Length=579, Percent_Identity=23.1433506044905, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI21356111, Length=498, Percent_Identity=26.9076305220884, Blast_Score=159, Evalue=5e-39, Organism=Drosophila melanogaster, GI20129717, Length=541, Percent_Identity=25.1386321626617, Blast_Score=148, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 75903; Mature: 75771
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSTKTVDIAAHPLTAWQGPLGLPDFAHIGDSDFSPVFDAALTAHEAEIDAIAGNKDAPT CCCCCEEEEECCCCHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH IENTLAALELGGEALDHVSSIFWCRAGAYTNETIQALERDISPKMSRHFSAISMNEKLFA HHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHH RIDDLYQRRESLDLDAETLRVLEKTWKGFVRSGAKLDAEGKKRLARINEELSSLGTAFGQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC NVLADERDWALFLDEADLAGLPDFLKSSMAEAAEMRGQKGRYAVTLSRSIYEPFTTFSER HHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHH RDLREIAFKAFTMRGQNGGASDNTEVVRDMLKLRAEKAELLGYASFAALKLDDTMAKTPK HHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHCHH AVHDLLDPVWEKALEKAAADQKELERLAAQAGSNEKFAAWDWRFYQEKLRAEKFAFDEAE HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCHHH LKPYLQLDRVIDACFDVATKLFGITFEEKKGIVAWHPDARVFVVKNADGSERALFLADYF CCHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEECCCCEEEEEECCCCCCCEEEHHHHH ARPSKRSGAWMSALKSGYKLGNGSKPVIYNIMNFAKPPAGEPALLSVDEAKTLFHEFGHA CCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHH LHGMLTDVTWPSVAGTSVSRDFVELPSQLYEHWLTVPAVLEKHALHVKTGKPMPKALLDK HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHH MLATRTFGAGFATVEFTSSALIDMAYHARPDAPAEPLRFEAETLEKLDMPDTIAMRHRTP HHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCC HFGHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGDPFNPALAERLRKNIYAAGGSKDP CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCH EELYTAFRGKMPSPEAMMVKRGLV HHHHHHHHCCCCCCHHHHHHCCCC >Mature Secondary Structure PSTKTVDIAAHPLTAWQGPLGLPDFAHIGDSDFSPVFDAALTAHEAEIDAIAGNKDAPT CCCCEEEEECCCCHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH IENTLAALELGGEALDHVSSIFWCRAGAYTNETIQALERDISPKMSRHFSAISMNEKLFA HHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHH RIDDLYQRRESLDLDAETLRVLEKTWKGFVRSGAKLDAEGKKRLARINEELSSLGTAFGQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC NVLADERDWALFLDEADLAGLPDFLKSSMAEAAEMRGQKGRYAVTLSRSIYEPFTTFSER HHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHH RDLREIAFKAFTMRGQNGGASDNTEVVRDMLKLRAEKAELLGYASFAALKLDDTMAKTPK HHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHCHH AVHDLLDPVWEKALEKAAADQKELERLAAQAGSNEKFAAWDWRFYQEKLRAEKFAFDEAE HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCHHH LKPYLQLDRVIDACFDVATKLFGITFEEKKGIVAWHPDARVFVVKNADGSERALFLADYF CCHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEECCCCEEEEEECCCCCCCEEEHHHHH ARPSKRSGAWMSALKSGYKLGNGSKPVIYNIMNFAKPPAGEPALLSVDEAKTLFHEFGHA CCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHH LHGMLTDVTWPSVAGTSVSRDFVELPSQLYEHWLTVPAVLEKHALHVKTGKPMPKALLDK HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHH MLATRTFGAGFATVEFTSSALIDMAYHARPDAPAEPLRFEAETLEKLDMPDTIAMRHRTP HHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCC HFGHVFSGDGYSAGYYSYMWSEVLDADAFAAFEETGDPFNPALAERLRKNIYAAGGSKDP CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCH EELYTAFRGKMPSPEAMMVKRGLV HHHHHHHHCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537804; 11677609 [H]