Click here to switch to the map view.

The map label for this gene is yhaJ [H]

Identifier: 13472251

GI number: 13472251

Start: 2017113

End: 2018036

Strand: Direct

Name: yhaJ [H]

Synonym: mlr2482

Alternate gene names: 13472251

Gene position: 2017113-2018036 (Clockwise)

Preceding gene: 13472249

Following gene: 13472253

Centisome position: 28.67

GC content: 66.99

Gene sequence:

>924_bases
ATGGCCGAATTCACCTTGCACGATTTGCAGTGCTTCGATGCGGTGATCCGCACCGGCGGCTTTCAGCCGGCGGCGGCGCT
GCTGCACCGCTCGCACCCGGCGGTGTTCGCCGCCGTCGCCAAGCTCGAACGACAGCTCGATCTCGTTCTCCTGGATCGCA
GCGGCTATCGTGTGCGCCCGACCGAGGCGGGGCTATCGTTCCACCGCCGGGCGCAATCGCTGCTGCGCGAACTGGACGGC
CTGCGCGTCCATGCCGCCCAGCTCTCGATGGGCGAGGAAAGCGAAATCCACGTCGTGATCGGCGACCTCTGCCCACGGCC
GCAGGCGCTGGGCATGCTCGGACGGTTCTTCGCCCAATGCCCGGGCACGCGCCTGCATCTGCATTTCGAAGCCGTCGGCG
GCCCTCGGGAGCGGCTTTTCGATGACGAGGCCGACCTGATCCTGCACTGGATCGACAAGGGCGATGCGCGGGTGGAATGG
ATCGATCTGTGCAAGGTGCCGTTCATTCCCGTGGCGGCGCCAGGCTTTTTGCCCGAGCGCCTCACGCAGCCGATCACGCT
GGACCAGATGCAGGCGCTCACCCAATGCGTCATGCGCGACACCGCCCGCCATTCGCCTCGGCAGGACTACTTCATGGTCG
AAGGCGCGCCGCAATGCCTGGTGCCCGACCAGGGCATGAAGAAGGAGATCATCCTGCAAGGTCTCGGCTGGGGCCACCTG
CCCCACTTCCTGATCGAGGAAGAATTGCACGATGGACGCCTGCGCTCCATCGCCGGCCGCCACATGCCTGGCCGCACCGA
CGAGCTGGTGGTGGCGCGCCGCCGCGACCGGCCGCATGGGCCGATCGCCAACCGGCTATGGGATCACATCCAGCAGGAGG
CGCCGGCCTTGCGCCTCGCATTGGAGCCTCGGAAAATCGCCTGA

Upstream 100 bases:

>100_bases
GATGAAAGTCCTTCTGGAACGTTGAATGAGGCGGAACGTAGTCGCGACGAGCTTTTGTTGATATTACAAAGATAGGACAA
ACTCAGTAGTCAAAGCTGAC

Downstream 100 bases:

>100_bases
GAGGTAGCGAGCGCGCACTGGAGCGGACTGGCAAGCCCTAAAGCCTGTCACGATCCGGCCTTTCGACGGTTGCAGGCCGC
CGGCTACGGCACCTGCGTGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MAEFTLHDLQCFDAVIRTGGFQPAAALLHRSHPAVFAAVAKLERQLDLVLLDRSGYRVRPTEAGLSFHRRAQSLLRELDG
LRVHAAQLSMGEESEIHVVIGDLCPRPQALGMLGRFFAQCPGTRLHLHFEAVGGPRERLFDDEADLILHWIDKGDARVEW
IDLCKVPFIPVAAPGFLPERLTQPITLDQMQALTQCVMRDTARHSPRQDYFMVEGAPQCLVPDQGMKKEIILQGLGWGHL
PHFLIEEELHDGRLRSIAGRHMPGRTDELVVARRRDRPHGPIANRLWDHIQQEAPALRLALEPRKIA

Sequences:

>Translated_307_residues
MAEFTLHDLQCFDAVIRTGGFQPAAALLHRSHPAVFAAVAKLERQLDLVLLDRSGYRVRPTEAGLSFHRRAQSLLRELDG
LRVHAAQLSMGEESEIHVVIGDLCPRPQALGMLGRFFAQCPGTRLHLHFEAVGGPRERLFDDEADLILHWIDKGDARVEW
IDLCKVPFIPVAAPGFLPERLTQPITLDQMQALTQCVMRDTARHSPRQDYFMVEGAPQCLVPDQGMKKEIILQGLGWGHL
PHFLIEEELHDGRLRSIAGRHMPGRTDELVVARRRDRPHGPIANRLWDHIQQEAPALRLALEPRKIA
>Mature_306_residues
AEFTLHDLQCFDAVIRTGGFQPAAALLHRSHPAVFAAVAKLERQLDLVLLDRSGYRVRPTEAGLSFHRRAQSLLRELDGL
RVHAAQLSMGEESEIHVVIGDLCPRPQALGMLGRFFAQCPGTRLHLHFEAVGGPRERLFDDEADLILHWIDKGDARVEWI
DLCKVPFIPVAAPGFLPERLTQPITLDQMQALTQCVMRDTARHSPRQDYFMVEGAPQCLVPDQGMKKEIILQGLGWGHLP
HFLIEEELHDGRLRSIAGRHMPGRTDELVVARRRDRPHGPIANRLWDHIQQEAPALRLALEPRKIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=279, Percent_Identity=29.3906810035842, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1786508, Length=260, Percent_Identity=24.6153846153846, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082024, Length=251, Percent_Identity=27.0916334661355, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787949, Length=253, Percent_Identity=23.7154150197628, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786713, Length=257, Percent_Identity=24.5136186770428, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082132, Length=246, Percent_Identity=25.2032520325203, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34653; Mature: 34521

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEFTLHDLQCFDAVIRTGGFQPAAALLHRSHPAVFAAVAKLERQLDLVLLDRSGYRVRP
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCEECC
TEAGLSFHRRAQSLLRELDGLRVHAAQLSMGEESEIHVVIGDLCPRPQALGMLGRFFAQC
HHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
PGTRLHLHFEAVGGPRERLFDDEADLILHWIDKGDARVEWIDLCKVPFIPVAAPGFLPER
CCCEEEEEEEECCCCHHHHCCCCHHEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHH
LTQPITLDQMQALTQCVMRDTARHSPRQDYFMVEGAPQCLVPDQGMKKEIILQGLGWGHL
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCC
PHFLIEEELHDGRLRSIAGRHMPGRTDELVVARRRDRPHGPIANRLWDHIQQEAPALRLA
HHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEE
LEPRKIA
CCCCCCC
>Mature Secondary Structure 
AEFTLHDLQCFDAVIRTGGFQPAAALLHRSHPAVFAAVAKLERQLDLVLLDRSGYRVRP
CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCEECC
TEAGLSFHRRAQSLLRELDGLRVHAAQLSMGEESEIHVVIGDLCPRPQALGMLGRFFAQC
HHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHC
PGTRLHLHFEAVGGPRERLFDDEADLILHWIDKGDARVEWIDLCKVPFIPVAAPGFLPER
CCCEEEEEEEECCCCHHHHCCCCHHEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHH
LTQPITLDQMQALTQCVMRDTARHSPRQDYFMVEGAPQCLVPDQGMKKEIILQGLGWGHL
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCC
PHFLIEEELHDGRLRSIAGRHMPGRTDELVVARRRDRPHGPIANRLWDHIQQEAPALRLA
HHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEE
LEPRKIA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]