BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ucpA [H]

Identifier: 13472033

GI number: 13472033

Start: 1777688

End: 1778416

Strand: Reverse

Name: ucpA [H]

Synonym: mll2196

Alternate gene names: 13472033

Gene position: 1778416-1777688 (Counterclockwise)

Preceding gene: 13472040

Following gene: 13472030

Centisome position: 25.28

GC content: 62.69

Gene sequence:

>729_bases
ATGGACATGACAGACAAGACCGCATTGGTGACCGGTGCCAACAAGAGCATAGGCTACGAAACCGCGCGCCGGCTGGGCGA
AGCGGGCTATAGGATTTGGCTGGGCAGCCGCGACAGGGAACGCGGCGAAGCTGCGGCGGCCGAGCTCAGGCAAAAGGGCC
TTGATGTGCGCATGCTGGAGATCGACGTCGCCAGCGACGCCAGCGTCGAGGCCGCCGCCCTGCGCGTTTTTGAGGAGGAC
GGACGCCTCGATGCGCTCGTCAACAATGCCGGCATCCTGGGCTCCATGCTCGCTCCCAGTGAAGAGCCCATAGCCATCAT
CAAGGATGTCTACGAGGTCAACGTGTTCGGCCCGATCCGCACCACGCAGGCCTTCCTGCCGCTGCTCAAGGCCGCCCCGT
GCGCCAATGTGGTGATGGTTTCCAGCGGGCTGGGGTCACTCGGCGGGTTGACCGATCCGGCCAGTGAGTTCTATGCGATC
AATATCCTTGGCTACAACAGCTCCAAGACGGCGCTCAACGCCGCCACCGTTGCCTTCTCGAAGGAGTTTGCCGCAGCGGG
TATTAAGGTCAATTCGGCCGATCCCGGCTATACCGCGACGGACTTCAACGGACACAGCGGCTACCGCACCGTGGGGCAGG
CGGCCGAGATCATTGTTCGCCTGGCGACCCTGGACAAAAACGGTCCGACCGGCGGCTATTTCTATGATGAGGGTCCGTTG
CCCTGGTAA

Upstream 100 bases:

>100_bases
GCTCCCGGCAGGAATAGGCAAGAACTCACCAGTTTTCGGCACGCAGCTGCCAGCGGTCCGCCCCATCTCTGCCGCAGACC
AACCACAGATCAAACTGGAG

Downstream 100 bases:

>100_bases
CGGCCCGGCAGGCCACCCGTTTCGGCTCCGGCCAGGGCCGCGGCCAGCAGCTTTGCCTGCGGTGTCAACTCGTCGAAGCT
GCGGGCGCACAAATTGAGCT

Product: short chain oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MDMTDKTALVTGANKSIGYETARRLGEAGYRIWLGSRDRERGEAAAAELRQKGLDVRMLEIDVASDASVEAAALRVFEED
GRLDALVNNAGILGSMLAPSEEPIAIIKDVYEVNVFGPIRTTQAFLPLLKAAPCANVVMVSSGLGSLGGLTDPASEFYAI
NILGYNSSKTALNAATVAFSKEFAAAGIKVNSADPGYTATDFNGHSGYRTVGQAAEIIVRLATLDKNGPTGGYFYDEGPL
PW

Sequences:

>Translated_242_residues
MDMTDKTALVTGANKSIGYETARRLGEAGYRIWLGSRDRERGEAAAAELRQKGLDVRMLEIDVASDASVEAAALRVFEED
GRLDALVNNAGILGSMLAPSEEPIAIIKDVYEVNVFGPIRTTQAFLPLLKAAPCANVVMVSSGLGSLGGLTDPASEFYAI
NILGYNSSKTALNAATVAFSKEFAAAGIKVNSADPGYTATDFNGHSGYRTVGQAAEIIVRLATLDKNGPTGGYFYDEGPL
PW
>Mature_242_residues
MDMTDKTALVTGANKSIGYETARRLGEAGYRIWLGSRDRERGEAAAAELRQKGLDVRMLEIDVASDASVEAAALRVFEED
GRLDALVNNAGILGSMLAPSEEPIAIIKDVYEVNVFGPIRTTQAFLPLLKAAPCANVVMVSSGLGSLGGLTDPASEFYAI
NILGYNSSKTALNAATVAFSKEFAAAGIKVNSADPGYTATDFNGHSGYRTVGQAAEIIVRLATLDKNGPTGGYFYDEGPL
PW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI225579078, Length=212, Percent_Identity=32.5471698113208, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI10190746, Length=222, Percent_Identity=32.8828828828829, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI146231950, Length=243, Percent_Identity=34.156378600823, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI186928839, Length=258, Percent_Identity=27.5193798449612, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI33667109, Length=205, Percent_Identity=31.7073170731707, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI5031737, Length=205, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI166795268, Length=208, Percent_Identity=30.2884615384615, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI32483357, Length=204, Percent_Identity=30.3921568627451, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7657478, Length=211, Percent_Identity=30.3317535545024, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4502599, Length=275, Percent_Identity=29.4545454545455, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7706318, Length=202, Percent_Identity=31.1881188118812, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4504503, Length=207, Percent_Identity=29.951690821256, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI44680136, Length=198, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI44680133, Length=198, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI17738292, Length=198, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40548397, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI214010158, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI214010156, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI22758144, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI126723191, Length=209, Percent_Identity=28.7081339712919, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI223718074, Length=227, Percent_Identity=31.2775330396476, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI87082100, Length=201, Percent_Identity=36.318407960199, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786812, Length=203, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082160, Length=198, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790717, Length=198, Percent_Identity=29.7979797979798, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI2367175, Length=210, Percent_Identity=30, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787335, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787526, Length=201, Percent_Identity=28.3582089552239, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786701, Length=201, Percent_Identity=30.3482587064677, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17558006, Length=207, Percent_Identity=29.4685990338164, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17558990, Length=260, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17559962, Length=232, Percent_Identity=28.8793103448276, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17558994, Length=250, Percent_Identity=30, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=204, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72001658, Length=240, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=210, Percent_Identity=31.4285714285714, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=210, Percent_Identity=31.4285714285714, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17558996, Length=259, Percent_Identity=25.8687258687259, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=211, Percent_Identity=30.3317535545024, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=210, Percent_Identity=30.4761904761905, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193207563, Length=254, Percent_Identity=30.3149606299213, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=196, Percent_Identity=30.1020408163265, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17558992, Length=250, Percent_Identity=32, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=205, Percent_Identity=26.8292682926829, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=212, Percent_Identity=29.7169811320755, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45554248, Length=267, Percent_Identity=31.4606741573034, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24640117, Length=267, Percent_Identity=31.4606741573034, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24640547, Length=259, Percent_Identity=31.6602316602317, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355319, Length=209, Percent_Identity=32.0574162679426, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI23397609, Length=209, Percent_Identity=33.4928229665072, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=212, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28571526, Length=208, Percent_Identity=31.25, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI22024069, Length=209, Percent_Identity=30.622009569378, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45553409, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24647948, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24647946, Length=205, Percent_Identity=29.2682926829268, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571387, Length=207, Percent_Identity=29.951690821256, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19921754, Length=210, Percent_Identity=29.5238095238095, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI116007236, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21357041, Length=209, Percent_Identity=31.1004784688995, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI28573296, Length=207, Percent_Identity=28.5024154589372, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=30.6930693069307, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25587; Mature: 25587

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMTDKTALVTGANKSIGYETARRLGEAGYRIWLGSRDRERGEAAAAELRQKGLDVRMLE
CCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
IDVASDASVEAAALRVFEEDGRLDALVNNAGILGSMLAPSEEPIAIIKDVYEVNVFGPIR
EEECCCCCHHHHHHEEHHCCCCEEEEECCCCCEEHHCCCCCCCHHHEEHHEEEEECCCCH
TTQAFLPLLKAAPCANVVMVSSGLGSLGGLTDPASEFYAINILGYNSSKTALNAATVAFS
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHH
KEFAAAGIKVNSADPGYTATDFNGHSGYRTVGQAAEIIVRLATLDKNGPTGGYFYDEGPL
HHHHHCCEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
PW
CC
>Mature Secondary Structure
MDMTDKTALVTGANKSIGYETARRLGEAGYRIWLGSRDRERGEAAAAELRQKGLDVRMLE
CCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
IDVASDASVEAAALRVFEEDGRLDALVNNAGILGSMLAPSEEPIAIIKDVYEVNVFGPIR
EEECCCCCHHHHHHEEHHCCCCEEEEECCCCCEEHHCCCCCCCHHHEEHHEEEEECCCCH
TTQAFLPLLKAAPCANVVMVSSGLGSLGGLTDPASEFYAINILGYNSSKTALNAATVAFS
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHH
KEFAAAGIKVNSADPGYTATDFNGHSGYRTVGQAAEIIVRLATLDKNGPTGGYFYDEGPL
HHHHHCCEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
PW
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]