BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is phbB [H]

Identifier: 13471918

GI number: 13471918

Start: 1675735

End: 1676433

Strand: Reverse

Name: phbB [H]

Synonym: mll2041

Alternate gene names: 13471918

Gene position: 1676433-1675735 (Counterclockwise)

Preceding gene: 13471920

Following gene: 13471917

Centisome position: 23.83

GC content: 69.24

Gene sequence:

>699_bases
ATGACCACGCGCCCCAACAAAGTCGCGCTCATCACCGGCGCCAATCGCGGCATCGGGCTGGAAACCGGCCGCCAGCTGGC
GAAACTTGGTTTCACCGTGCTGCTCGGCGTGCGCGATCTGGCCAAGGGCGAGGCCGCGGCGAAAGGGCTCGAGGGTCACG
TCGAGGCCATCGCGCTCGATGTCGCAGCACCCGACGCGGCGACAACGGCAGCCGATGAGGTGCAGCGCCGGTTCGGCCGG
CTCGACGTGCTGATCAACAATGCCGCCATCCACTACGACACCGGCTCGCGCGCTTTGCGGCCGGACTGGACGGTTATCCG
CGAGGCGTTCGAGACCAATGTCTTCGGCGCCTGGCGGGTGGCGGCCGCCTTTGCGCCGCTGCTGAAGGCCGGCGGCCACG
GCAGACTGGTCAATGTGTCGTCCGAAGGTGGTTCGCTGGCCTCGATGGGAGCGGGGGCGCCAGCCTATTCGACATCGAAG
GCGACGCTCAATGCGCTGACCTGCGTTTTGGCGGCGGAACTGCGCGGCTCCGGCGTGCTGGTCAATGCCATCTGCCCCGG
CTGGGTCGCCACCGACATGGGCGGGGCGGGCGGACGCCCGGTGGCGCAAGGGGCGGCCGGCATCGTCTGGGCCGCCACCT
TGCCTGATGACGGCCCGACCGGCGGCTTTTTCCGCGACGGCAAGAAACTGCCGTGGTGA

Upstream 100 bases:

>100_bases
TCATGCATCCGATCGCATAATGATTGCGACCTCGGCCGCCTAATAAATCAATCTGCCTCGTGCCATTTTTCTCCAAGCAA
TCGAAATCCAGGAGTGGCCC

Downstream 100 bases:

>100_bases
GCGAACAGGAGGCGACGATGAGAGTTGGAATTCTGGGCGCCGGCATGATCGGCGGCACGGTCGGACGGCTGTGGGCGCAG
GCTGGACATGAGGTGAGCTT

Product: short chain oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTTRPNKVALITGANRGIGLETGRQLAKLGFTVLLGVRDLAKGEAAAKGLEGHVEAIALDVAAPDAATTAADEVQRRFGR
LDVLINNAAIHYDTGSRALRPDWTVIREAFETNVFGAWRVAAAFAPLLKAGGHGRLVNVSSEGGSLASMGAGAPAYSTSK
ATLNALTCVLAAELRGSGVLVNAICPGWVATDMGGAGGRPVAQGAAGIVWAATLPDDGPTGGFFRDGKKLPW

Sequences:

>Translated_232_residues
MTTRPNKVALITGANRGIGLETGRQLAKLGFTVLLGVRDLAKGEAAAKGLEGHVEAIALDVAAPDAATTAADEVQRRFGR
LDVLINNAAIHYDTGSRALRPDWTVIREAFETNVFGAWRVAAAFAPLLKAGGHGRLVNVSSEGGSLASMGAGAPAYSTSK
ATLNALTCVLAAELRGSGVLVNAICPGWVATDMGGAGGRPVAQGAAGIVWAATLPDDGPTGGFFRDGKKLPW
>Mature_231_residues
TTRPNKVALITGANRGIGLETGRQLAKLGFTVLLGVRDLAKGEAAAKGLEGHVEAIALDVAAPDAATTAADEVQRRFGRL
DVLINNAAIHYDTGSRALRPDWTVIREAFETNVFGAWRVAAAFAPLLKAGGHGRLVNVSSEGGSLASMGAGAPAYSTSKA
TLNALTCVLAAELRGSGVLVNAICPGWVATDMGGAGGRPVAQGAAGIVWAATLPDDGPTGGFFRDGKKLPW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4502599, Length=276, Percent_Identity=29.7101449275362, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4502601, Length=277, Percent_Identity=30.3249097472924, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI225579078, Length=216, Percent_Identity=32.8703703703704, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=30.7291666666667, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=30.3664921465969, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI40548397, Length=218, Percent_Identity=30.2752293577982, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI214010158, Length=218, Percent_Identity=30.2752293577982, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI214010156, Length=218, Percent_Identity=30.2752293577982, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI22758144, Length=218, Percent_Identity=30.2752293577982, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4504503, Length=207, Percent_Identity=31.4009661835749, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7657478, Length=228, Percent_Identity=30.7017543859649, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI10190746, Length=273, Percent_Identity=27.8388278388278, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI59889578, Length=170, Percent_Identity=31.7647058823529, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI166795268, Length=209, Percent_Identity=30.622009569378, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI186928839, Length=208, Percent_Identity=30.2884615384615, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7706318, Length=201, Percent_Identity=28.8557213930348, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI10190704, Length=190, Percent_Identity=27.3684210526316, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=31.7708333333333, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI119392083, Length=191, Percent_Identity=30.3664921465969, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=152, Percent_Identity=30.9210526315789, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI87082100, Length=197, Percent_Identity=35.0253807106599, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787335, Length=189, Percent_Identity=31.2169312169312, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786701, Length=192, Percent_Identity=34.8958333333333, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788459, Length=199, Percent_Identity=33.1658291457286, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87082160, Length=194, Percent_Identity=28.3505154639175, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI2367175, Length=202, Percent_Identity=29.2079207920792, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17559962, Length=214, Percent_Identity=34.5794392523364, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI72001658, Length=210, Percent_Identity=33.8095238095238, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17559964, Length=212, Percent_Identity=33.9622641509434, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17558996, Length=249, Percent_Identity=28.1124497991968, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17558994, Length=242, Percent_Identity=29.3388429752066, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=203, Percent_Identity=33.9901477832512, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=215, Percent_Identity=34.4186046511628, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17558990, Length=248, Percent_Identity=29.8387096774194, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=31.6582914572864, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542178, Length=233, Percent_Identity=31.3304721030043, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193207563, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=206, Percent_Identity=34.4660194174757, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17558992, Length=244, Percent_Identity=29.0983606557377, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17532177, Length=251, Percent_Identity=29.4820717131474, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=194, Percent_Identity=30.9278350515464, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17541382, Length=253, Percent_Identity=30.4347826086957, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=192, Percent_Identity=31.25, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=208, Percent_Identity=30.2884615384615, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=198, Percent_Identity=31.3131313131313, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=203, Percent_Identity=32.0197044334975, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=26.7676767676768, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=196, Percent_Identity=32.6530612244898, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=233, Percent_Identity=29.1845493562232, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=229, Percent_Identity=28.3842794759825, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=192, Percent_Identity=31.25, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=193, Percent_Identity=31.6062176165803, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=202, Percent_Identity=28.7128712871287, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322779, Length=206, Percent_Identity=29.126213592233, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=207, Percent_Identity=29.4685990338164, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=219, Percent_Identity=27.8538812785388, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=37.8947368421053, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571526, Length=205, Percent_Identity=34.6341463414634, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI22024069, Length=211, Percent_Identity=31.2796208530806, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355319, Length=193, Percent_Identity=31.0880829015544, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24586328, Length=262, Percent_Identity=29.7709923664122, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24580925, Length=221, Percent_Identity=32.579185520362, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24663911, Length=197, Percent_Identity=30.9644670050761, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357041, Length=206, Percent_Identity=34.4660194174757, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24640547, Length=246, Percent_Identity=29.6747967479675, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24656154, Length=267, Percent_Identity=28.0898876404494, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19922628, Length=267, Percent_Identity=28.0898876404494, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19921754, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24644339, Length=196, Percent_Identity=33.1632653061224, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24643142, Length=192, Percent_Identity=33.8541666666667, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=31.2138728323699, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI28573296, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17737361, Length=198, Percent_Identity=29.2929292929293, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011283
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.36 [H]

Molecular weight: Translated: 23728; Mature: 23597

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRPNKVALITGANRGIGLETGRQLAKLGFTVLLGVRDLAKGEAAAKGLEGHVEAIALD
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEE
VAAPDAATTAADEVQRRFGRLDVLINNAAIHYDTGSRALRPDWTVIREAFETNVFGAWRV
ECCCCCHHHHHHHHHHHHCCEEEEEECEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHH
AAAFAPLLKAGGHGRLVNVSSEGGSLASMGAGAPAYSTSKATLNALTCVLAAELRGSGVL
HHHHHHHHHCCCCCEEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
VNAICPGWVATDMGGAGGRPVAQGAAGIVWAATLPDDGPTGGFFRDGKKLPW
EEECCCCCHHHCCCCCCCCCHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTRPNKVALITGANRGIGLETGRQLAKLGFTVLLGVRDLAKGEAAAKGLEGHVEAIALD
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEE
VAAPDAATTAADEVQRRFGRLDVLINNAAIHYDTGSRALRPDWTVIREAFETNVFGAWRV
ECCCCCHHHHHHHHHHHHCCEEEEEECEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHH
AAAFAPLLKAGGHGRLVNVSSEGGSLASMGAGAPAYSTSKATLNALTCVLAAELRGSGVL
HHHHHHHHHCCCCCEEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
VNAICPGWVATDMGGAGGRPVAQGAAGIVWAATLPDDGPTGGFFRDGKKLPW
EEECCCCCHHHCCCCCCCCCHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2670935 [H]