Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 13471875

GI number: 13471875

Start: 1632644

End: 1634221

Strand: Reverse

Name: rpfG [H]

Synonym: mll1989

Alternate gene names: 13471875

Gene position: 1634221-1632644 (Counterclockwise)

Preceding gene: 13471876

Following gene: 13471874

Centisome position: 23.23

GC content: 68.06

Gene sequence:

>1578_bases
ATGACAGATGTCTCGATACGCCGGGCTGACTTCATGATGGTCCTGGCCTATGCCTCGGATCTCGCCACTGGCCATTCTCG
CGACTTCGCGCTGAAATCCTGCGTGCTTGCAATGCGGATCGCCGAGCTTGCGGGTGTTTCCGATGAGGTTCGGCGCAACG
CCTACCATCAGTCGATGCTGCGCTATGTCGGCTGCAATGCCGACACGGACCTTCTGTCGGCCACGTTCGGCGACGAAATC
GCCCTGCGCCAGGATCTTGTCGGTCTCGACATGGGCAACCGTGCGGAACTGGGCAGGGTCTTCGTGCAGGCCTTCAAGCG
GTTCTACTACGATCTCGAGCCTGACGCGCAGGCCAGGGCGATCGAGGCCGCGATGTCGCAGGCGCTCGCGGTGGCGCGTC
CGGTGCTCACAGCGCATTGCGAGGTCGCGCAGCGGATCGGCGCGCGGCTCGGCCTGTCCGACGAGATCCGGCGCAATCTC
GGGCAGATCTACGAACGCTGGGACGGCAAGGGCCTGCCGCGCGGGCTGAGTGGCGAGGACGTGCTGCCCGCCGTGCGCCT
GATCACATTGGCGCAGGATGCGATTGCGCTCAGCGATGCCGTCGGCATCGACGGGATGGCCGAAACCGTCGCCAGCCGCG
GCGATGGTCCATACGAAGCCGGTCTGGCCCGGCTCGTCTCGGCCAACGCGGCGGCCCTGATGGAGGGCATTGGCGCGACC
GTCGACCGCGACACCATCTTGGCGCTCGAGCCGGATCCGCCGGCGACGCTGGACGAGGGGGCTTGCGACGAGGCGTTCCT
CGCCATAGCCGACATGATCGACATGCGCATGCCGTTTACGCAGGGCCATTCGAGGATGGTGTCGGAACTGGCCGCGGGTG
CGGGCAAACGGATCGGACTGCCCGAGCCTGACGTTCGCGCGCTGCGCTGGTCGGGCTGCATCCACGACATTGGCGAACTC
GTGGTGCCGGTGGCGACCTGGATGCGCAACGGCCCGCTGTCGGTGCGCGAACGCGACGCGGCACAGCTGCACGCCTATTA
CGGCGAGCGGGCCCTGGCCTCGTTCGGCCGCGAGGGCGAGGCGATGGCCGCCCTCGTGCTTCGCCATCACGAGCGCCTGG
ATGGCTCGGGTTATCACCGCAAGGTCGGCGGCTCGGACCTGTCGCCGGCGGCAAGGATCCTGGCCGCTGCCGAAGCCTTC
CAGACGTCGCGAGAGGAACGTCCGCACCGCAAGGCGCTGTCCAGCGAGGCGGCGGCGACCCAGCTGCGCGCCGCCGTGCG
TGACGGCTGTATCTGCCCCGACGCCGCGGAGGCCGTATTGTCCTTCGCCGGGCAGCCATCGCGGCGGGCCGGGCCGCAAG
CGCTTGCCGGCATGACGCCGCGCGAGATCGAGGTGCTACGCCTGATCGCCACCGGACTCACGGCGAAGGAGGTGGCCCGA
AAGCTTGATATCTCGCCCAAGACCGCGGACCACCATATCGAGAGCGTCTATTCCAAGATCGGCGTGACCACCCGTGCCGC
GGCCGCGCTCTACGCGGTGGAGCACGGCCTTGTCCGACCTGGCGAAACGCGAGCATAG

Upstream 100 bases:

>100_bases
CCAAAACAGAACGCTCTGTTTCTTCTACATCCGGCCTTGGGATTTTCCCCTAGGTATTGACGGCACACGGGGCTAGCATA
CGGGTCACTGGGGGTGTGCG

Downstream 100 bases:

>100_bases
GGAATCCACCCCATGCGCGCCTGCAGCGAGGCGCGCATCGTGATCCTGTCGACGGACCAATGATGGCCGTGACCGACAGG
AGGAAATCAAGATGCTTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 524

Protein sequence:

>525_residues
MTDVSIRRADFMMVLAYASDLATGHSRDFALKSCVLAMRIAELAGVSDEVRRNAYHQSMLRYVGCNADTDLLSATFGDEI
ALRQDLVGLDMGNRAELGRVFVQAFKRFYYDLEPDAQARAIEAAMSQALAVARPVLTAHCEVAQRIGARLGLSDEIRRNL
GQIYERWDGKGLPRGLSGEDVLPAVRLITLAQDAIALSDAVGIDGMAETVASRGDGPYEAGLARLVSANAAALMEGIGAT
VDRDTILALEPDPPATLDEGACDEAFLAIADMIDMRMPFTQGHSRMVSELAAGAGKRIGLPEPDVRALRWSGCIHDIGEL
VVPVATWMRNGPLSVRERDAAQLHAYYGERALASFGREGEAMAALVLRHHERLDGSGYHRKVGGSDLSPAARILAAAEAF
QTSREERPHRKALSSEAAATQLRAAVRDGCICPDAAEAVLSFAGQPSRRAGPQALAGMTPREIEVLRLIATGLTAKEVAR
KLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGLVRPGETRA

Sequences:

>Translated_525_residues
MTDVSIRRADFMMVLAYASDLATGHSRDFALKSCVLAMRIAELAGVSDEVRRNAYHQSMLRYVGCNADTDLLSATFGDEI
ALRQDLVGLDMGNRAELGRVFVQAFKRFYYDLEPDAQARAIEAAMSQALAVARPVLTAHCEVAQRIGARLGLSDEIRRNL
GQIYERWDGKGLPRGLSGEDVLPAVRLITLAQDAIALSDAVGIDGMAETVASRGDGPYEAGLARLVSANAAALMEGIGAT
VDRDTILALEPDPPATLDEGACDEAFLAIADMIDMRMPFTQGHSRMVSELAAGAGKRIGLPEPDVRALRWSGCIHDIGEL
VVPVATWMRNGPLSVRERDAAQLHAYYGERALASFGREGEAMAALVLRHHERLDGSGYHRKVGGSDLSPAARILAAAEAF
QTSREERPHRKALSSEAAATQLRAAVRDGCICPDAAEAVLSFAGQPSRRAGPQALAGMTPREIEVLRLIATGLTAKEVAR
KLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGLVRPGETRA
>Mature_524_residues
TDVSIRRADFMMVLAYASDLATGHSRDFALKSCVLAMRIAELAGVSDEVRRNAYHQSMLRYVGCNADTDLLSATFGDEIA
LRQDLVGLDMGNRAELGRVFVQAFKRFYYDLEPDAQARAIEAAMSQALAVARPVLTAHCEVAQRIGARLGLSDEIRRNLG
QIYERWDGKGLPRGLSGEDVLPAVRLITLAQDAIALSDAVGIDGMAETVASRGDGPYEAGLARLVSANAAALMEGIGATV
DRDTILALEPDPPATLDEGACDEAFLAIADMIDMRMPFTQGHSRMVSELAAGAGKRIGLPEPDVRALRWSGCIHDIGELV
VPVATWMRNGPLSVRERDAAQLHAYYGERALASFGREGEAMAALVLRHHERLDGSGYHRKVGGSDLSPAARILAAAEAFQ
TSREERPHRKALSSEAAATQLRAAVRDGCICPDAAEAVLSFAGQPSRRAGPQALAGMTPREIEVLRLIATGLTAKEVARK
LDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGLVRPGETRA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 56341; Mature: 56210

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVSIRRADFMMVLAYASDLATGHSRDFALKSCVLAMRIAELAGVSDEVRRNAYHQSML
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RYVGCNADTDLLSATFGDEIALRQDLVGLDMGNRAELGRVFVQAFKRFYYDLEPDAQARA
HHHCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
IEAAMSQALAVARPVLTAHCEVAQRIGARLGLSDEIRRNLGQIYERWDGKGLPRGLSGED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
VLPAVRLITLAQDAIALSDAVGIDGMAETVASRGDGPYEAGLARLVSANAAALMEGIGAT
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
VDRDTILALEPDPPATLDEGACDEAFLAIADMIDMRMPFTQGHSRMVSELAAGAGKRIGL
CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
PEPDVRALRWSGCIHDIGELVVPVATWMRNGPLSVRERDAAQLHAYYGERALASFGREGE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
AMAALVLRHHERLDGSGYHRKVGGSDLSPAARILAAAEAFQTSREERPHRKALSSEAAAT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QLRAAVRDGCICPDAAEAVLSFAGQPSRRAGPQALAGMTPREIEVLRLIATGLTAKEVAR
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHH
KLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGLVRPGETRA
HHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDVSIRRADFMMVLAYASDLATGHSRDFALKSCVLAMRIAELAGVSDEVRRNAYHQSML
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RYVGCNADTDLLSATFGDEIALRQDLVGLDMGNRAELGRVFVQAFKRFYYDLEPDAQARA
HHHCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
IEAAMSQALAVARPVLTAHCEVAQRIGARLGLSDEIRRNLGQIYERWDGKGLPRGLSGED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
VLPAVRLITLAQDAIALSDAVGIDGMAETVASRGDGPYEAGLARLVSANAAALMEGIGAT
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
VDRDTILALEPDPPATLDEGACDEAFLAIADMIDMRMPFTQGHSRMVSELAAGAGKRIGL
CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
PEPDVRALRWSGCIHDIGELVVPVATWMRNGPLSVRERDAAQLHAYYGERALASFGREGE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
AMAALVLRHHERLDGSGYHRKVGGSDLSPAARILAAAEAFQTSREERPHRKALSSEAAAT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
QLRAAVRDGCICPDAAEAVLSFAGQPSRRAGPQALAGMTPREIEVLRLIATGLTAKEVAR
HHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHH
KLDISPKTADHHIESVYSKIGVTTRAAAALYAVEHGLVRPGETRA
HHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]