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The map label for this gene is ydcR [C]

Identifier: 13471747

GI number: 13471747

Start: 1503598

End: 1504824

Strand: Reverse

Name: ydcR [C]

Synonym: mll1817

Alternate gene names: 13471747

Gene position: 1504824-1503598 (Counterclockwise)

Preceding gene: 13471748

Following gene: 13471744

Centisome position: 21.39

GC content: 67.32

Gene sequence:

>1227_bases
TTGACCCTTTTGAACCTGCTGGCTTCGCGCTCGTCGCGCATGAAGGCCTCCGAAATCCGCGAACTGTTGAAGCTGCTCGA
CCAGCCCGACATCATCTCCTTCGCCGGCGGCATTCCCGATCCGGCGCTGTTTCCGGCCGACGCCATCCGCGATGCCTATG
CCGAGGTGCTGGGCGGTGCGGAGGCCGGTGCGGCACTGCAGTACCAGGTGTCGGAAGGTTATCTGCCGTTGAGGCGCTGG
ATCGCCGGGCAGATGGGCAAGCTCGGTGTCGCCTGCGACGAGGCCAACATCTTCATCACCTCCGGCTCGCAGCAGGCGCT
GGATTATCTCGGCAAACTGTTCCTGTCGCCGGGCGACACCGCGCTGGTGACATGGCCGACCTATCTCGGCGCGCTGCAGG
CGTTCAACGCCTATGAGCCGCGCTATGACCGGCTGCGGCCGGAAGGCGGCAACATGACGCCGGACGCCTATCGCGCGGCG
GCGGCCGCCCCCACCAGTTCTTCAAGGGGGGGCGGCAAGGTCAAGTTCGCCTATCTGGTGCCCGACTTCGCCAACCCGAC
CGGCAACACGCTGGACCGGAAGCAGCGCGAAGCGGTGCTCGATCTTGCCGGCGAACTCGACATCGCCGTCATCGAGGACG
CCGCCTATCGCGCGCTGCGCTATGACGGCGAGGGCGTGCCGCCGATCCTGGCGCTCGATTGCGCGAGGTCGGGCGGTATC
GACAAGGCGCGCACGCTCTATTGCGGCTCGTTCTCGAAAATCCTGTCGCCGGGCATGCGCGTCGGCTGGGTGTGCGCGCC
GCGCCATGTGGTGGAAAAACTGGTGCTGATGAAGCAGGCGTCCGACCTGCACAGCCCGTCGATCAACCAGTTGGTCATGC
ACCGCGTCGCCGAATCCGTGTTCGACGGCCAGGTCGACAAACTGATCGGCGCCTATCGCGAGCGCCGCGACGGCCTGCTG
GGCGCACTGGAAGCCCACATGCCGGAGGGCGTGACCTGGAGCCGCCCGGAAGGTGGCATGTTCGTCTGGGCGACGCTGCC
GGAAGGGTCCGACGCCACCGAGCTTTTGGCGCGGTCGGTGAAGGAGGCGCGCGTCGCCTTCGTGCCCGGCAACGCTTTTT
ACGCCGACGGCACCGGGCGCAACACGCTGCGGCTGTCCTTCACGCTGGCCGACCGCCGCGCGGTGACCGAGGGCATTCCA
CGGCTGGCGGCGCTGCTGAAAGGGTAG

Upstream 100 bases:

>100_bases
CGTATAGCGGAAGGCTTTCAGGCACTATTCAAATTGCCTGACAAAGCGGATATAGGTCAGCTACATTGACCTATATGAAA
ATCGTCTGGGGAGGCGTGAC

Downstream 100 bases:

>100_bases
GCCGGTCATGCAGGGCGGCATTTCTATGCCGTCACGGTGACCAGATGCTTGAGTATCGCAAGCCTGGTGCGCGCCAGTCT
GCGGAGCGGTTTTTCAAAGC

Product: aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MTLLNLLASRSSRMKASEIRELLKLLDQPDIISFAGGIPDPALFPADAIRDAYAEVLGGAEAGAALQYQVSEGYLPLRRW
IAGQMGKLGVACDEANIFITSGSQQALDYLGKLFLSPGDTALVTWPTYLGALQAFNAYEPRYDRLRPEGGNMTPDAYRAA
AAAPTSSSRGGGKVKFAYLVPDFANPTGNTLDRKQREAVLDLAGELDIAVIEDAAYRALRYDGEGVPPILALDCARSGGI
DKARTLYCGSFSKILSPGMRVGWVCAPRHVVEKLVLMKQASDLHSPSINQLVMHRVAESVFDGQVDKLIGAYRERRDGLL
GALEAHMPEGVTWSRPEGGMFVWATLPEGSDATELLARSVKEARVAFVPGNAFYADGTGRNTLRLSFTLADRRAVTEGIP
RLAALLKG

Sequences:

>Translated_408_residues
MTLLNLLASRSSRMKASEIRELLKLLDQPDIISFAGGIPDPALFPADAIRDAYAEVLGGAEAGAALQYQVSEGYLPLRRW
IAGQMGKLGVACDEANIFITSGSQQALDYLGKLFLSPGDTALVTWPTYLGALQAFNAYEPRYDRLRPEGGNMTPDAYRAA
AAAPTSSSRGGGKVKFAYLVPDFANPTGNTLDRKQREAVLDLAGELDIAVIEDAAYRALRYDGEGVPPILALDCARSGGI
DKARTLYCGSFSKILSPGMRVGWVCAPRHVVEKLVLMKQASDLHSPSINQLVMHRVAESVFDGQVDKLIGAYRERRDGLL
GALEAHMPEGVTWSRPEGGMFVWATLPEGSDATELLARSVKEARVAFVPGNAFYADGTGRNTLRLSFTLADRRAVTEGIP
RLAALLKG
>Mature_407_residues
TLLNLLASRSSRMKASEIRELLKLLDQPDIISFAGGIPDPALFPADAIRDAYAEVLGGAEAGAALQYQVSEGYLPLRRWI
AGQMGKLGVACDEANIFITSGSQQALDYLGKLFLSPGDTALVTWPTYLGALQAFNAYEPRYDRLRPEGGNMTPDAYRAAA
AAPTSSSRGGGKVKFAYLVPDFANPTGNTLDRKQREAVLDLAGELDIAVIEDAAYRALRYDGEGVPPILALDCARSGGID
KARTLYCGSFSKILSPGMRVGWVCAPRHVVEKLVLMKQASDLHSPSINQLVMHRVAESVFDGQVDKLIGAYRERRDGLLG
ALEAHMPEGVTWSRPEGGMFVWATLPEGSDATELLARSVKEARVAFVPGNAFYADGTGRNTLRLSFTLADRRAVTEGIPR
LAALLKG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=429, Percent_Identity=29.1375291375291, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI33469970, Length=429, Percent_Identity=29.1375291375291, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI95147551, Length=293, Percent_Identity=27.3037542662116, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI169881279, Length=293, Percent_Identity=27.3037542662116, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1787710, Length=370, Percent_Identity=29.4594594594595, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790797, Length=383, Percent_Identity=27.6762402088773, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788722, Length=399, Percent_Identity=27.0676691729323, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321000, Length=246, Percent_Identity=28.8617886178862, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21356535, Length=422, Percent_Identity=25.8293838862559, Blast_Score=111, Evalue=9e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 43977; Mature: 43846

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLNLLASRSSRMKASEIRELLKLLDQPDIISFAGGIPDPALFPADAIRDAYAEVLGGA
CHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
EAGAALQYQVSEGYLPLRRWIAGQMGKLGVACDEANIFITSGSQQALDYLGKLFLSPGDT
CCCCEEEEEECCCCHHHHHHHHCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHCCCCCC
ALVTWPTYLGALQAFNAYEPRYDRLRPEGGNMTPDAYRAAAAAPTSSSRGGGKVKFAYLV
EEEEHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEE
PDFANPTGNTLDRKQREAVLDLAGELDIAVIEDAAYRALRYDGEGVPPILALDCARSGGI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHEECCCCCCCEEEEECCCCCCC
DKARTLYCGSFSKILSPGMRVGWVCAPRHVVEKLVLMKQASDLHSPSINQLVMHRVAESV
CHHHEEECCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FDGQVDKLIGAYRERRDGLLGALEAHMPEGVTWSRPEGGMFVWATLPEGSDATELLARSV
HCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
KEARVAFVPGNAFYADGTGRNTLRLSFTLADRRAVTEGIPRLAALLKG
HHCEEEEECCCEEEECCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLLNLLASRSSRMKASEIRELLKLLDQPDIISFAGGIPDPALFPADAIRDAYAEVLGGA
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
EAGAALQYQVSEGYLPLRRWIAGQMGKLGVACDEANIFITSGSQQALDYLGKLFLSPGDT
CCCCEEEEEECCCCHHHHHHHHCCCCCCCEEECCCEEEEECCCHHHHHHHHHHHCCCCCC
ALVTWPTYLGALQAFNAYEPRYDRLRPEGGNMTPDAYRAAAAAPTSSSRGGGKVKFAYLV
EEEEHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEE
PDFANPTGNTLDRKQREAVLDLAGELDIAVIEDAAYRALRYDGEGVPPILALDCARSGGI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHEECCCCCCCEEEEECCCCCCC
DKARTLYCGSFSKILSPGMRVGWVCAPRHVVEKLVLMKQASDLHSPSINQLVMHRVAESV
CHHHEEECCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FDGQVDKLIGAYRERRDGLLGALEAHMPEGVTWSRPEGGMFVWATLPEGSDATELLARSV
HCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
KEARVAFVPGNAFYADGTGRNTLRLSFTLADRRAVTEGIPRLAALLKG
HHCEEEEECCCEEEECCCCCCEEEEEEEECHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]