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The map label for this gene is rpoE [C]

Identifier: 13471494

GI number: 13471494

Start: 1229378

End: 1230301

Strand: Direct

Name: rpoE [C]

Synonym: mlr1481

Alternate gene names: 13471494

Gene position: 1229378-1230301 (Clockwise)

Preceding gene: 13471493

Following gene: 13471496

Centisome position: 17.47

GC content: 62.99

Gene sequence:

>924_bases
GTGATCCAGGCAGATGAGGTCGCAGAACGGAGGCTCATGAACATTCCTATTTCTGGCGGGCAGCATGGGCTCTTCGAGCG
CCTGTTTGCGGAATTGCGCCCCAAGCTGCACCGCTACTGTGCCCGCATGACCGGCTCGGTCTTCGATGGCGAGGATGTGT
TGCAGGAGACGCTGGCCAAGGCGATCGAGGCCTTGCCCGGTGCCGGCCCGATCGCCAATCCTGAAGGCTGGTTGTTTCGC
ATCGCACACAATGCGGCGCTCGATTTCCTGCGCCGCCGCGCCCGCGAACAGGCCTATTCCGACGAGGATCTGGACATGAT
CGTCGACCCGGCGAATCCCACCATCGATCGCCAGGCCGCTTCTGCGGGGCTCCATACCTTCATGCGCCTTCCCGTCACGC
AGCGAAGCAGCGTCATCATGATGGACGTTCTGGGCTACTCCTTGCAGGAGATCAGCGCCATGCTCGATACCAGCATTCCC
GCGGTCAAGGCCGCGCTGCATCGCGGCCGCGACCGGCTGCGCCAGATTGCCAACGAACCCCACGACCGCCCTCTTCCAAG
ACTGGGCGCCGCGGAACGTCAGTTGCTCAACGCCTATATCGATCGCTTTAATGCCCGTGATTTCGACGCGGTGCGCGACA
TGCTGGCTGAAGAGGTGCGGCTGGAACTGGTGGCCAAGACACGGCTGAACGGCCGCGAGGAAGTCGGCACCTATTTCGGC
AACTATTCCCGGGCGCAGGATTGGCATCTCGTGCCCGGCTTCGTTGAAAACAGGCCGGCGATCCTCGTGCACGATCTCAA
CGACCCGGCGACGCGACCCGCTTATTTCATCGTGCTGGCCTGGCACGACGGCAGGCTTGCCGCCATCGGCGATTTCCGCC
ACGCCCGCTACGTCGCTGACAGCGCCGATATGCACGCTCTTTGA

Upstream 100 bases:

>100_bases
CCACATTCAAGGCCTTTCAACGCGGCTTCGGGGATCGCTGCAGCGAACCTCCGCAACGCGACGAGATGGCCGTGATAGGC
AGCTACCGGATGCTGGATGC

Downstream 100 bases:

>100_bases
AACGATTTCGGGACGCGAAGGCTTCGCCCTACTGCCCTACTGCCCTATTGCTACTGCAACGACTTCAACAAATTGTCGAT
CGTGAACGGATTGGACTTCG

Product: RNA polymerase sigma subunit

Products: NA

Alternate protein names: RNA Polymerase Factor Sigma-; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Subunit; Sigma-; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase ECF-Type Sigma Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit ECF Family; AlteRNAtive RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma-70 Factor SigG; RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma Factor SigW; RNA Polymerase ECF-Type Sigma Factor SigG; RNA Polymerase Sigma Factor Carq; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Ecf-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Subunit; ECF-Family Sigma Factor E; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; RNA Polymerase Sigma-W Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit Ecf Family; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-70 Factor Family Protein

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIQADEVAERRLMNIPISGGQHGLFERLFAELRPKLHRYCARMTGSVFDGEDVLQETLAKAIEALPGAGPIANPEGWLFR
IAHNAALDFLRRRAREQAYSDEDLDMIVDPANPTIDRQAASAGLHTFMRLPVTQRSSVIMMDVLGYSLQEISAMLDTSIP
AVKAALHRGRDRLRQIANEPHDRPLPRLGAAERQLLNAYIDRFNARDFDAVRDMLAEEVRLELVAKTRLNGREEVGTYFG
NYSRAQDWHLVPGFVENRPAILVHDLNDPATRPAYFIVLAWHDGRLAAIGDFRHARYVADSADMHAL

Sequences:

>Translated_307_residues
MIQADEVAERRLMNIPISGGQHGLFERLFAELRPKLHRYCARMTGSVFDGEDVLQETLAKAIEALPGAGPIANPEGWLFR
IAHNAALDFLRRRAREQAYSDEDLDMIVDPANPTIDRQAASAGLHTFMRLPVTQRSSVIMMDVLGYSLQEISAMLDTSIP
AVKAALHRGRDRLRQIANEPHDRPLPRLGAAERQLLNAYIDRFNARDFDAVRDMLAEEVRLELVAKTRLNGREEVGTYFG
NYSRAQDWHLVPGFVENRPAILVHDLNDPATRPAYFIVLAWHDGRLAAIGDFRHARYVADSADMHAL
>Mature_307_residues
MIQADEVAERRLMNIPISGGQHGLFERLFAELRPKLHRYCARMTGSVFDGEDVLQETLAKAIEALPGAGPIANPEGWLFR
IAHNAALDFLRRRAREQAYSDEDLDMIVDPANPTIDRQAASAGLHTFMRLPVTQRSSVIMMDVLGYSLQEISAMLDTSIP
AVKAALHRGRDRLRQIANEPHDRPLPRLGAAERQLLNAYIDRFNARDFDAVRDMLAEEVRLELVAKTRLNGREEVGTYFG
NYSRAQDWHLVPGFVENRPAILVHDLNDPATRPAYFIVLAWHDGRLAAIGDFRHARYVADSADMHAL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34584; Mature: 34584

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQADEVAERRLMNIPISGGQHGLFERLFAELRPKLHRYCARMTGSVFDGEDVLQETLAK
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AIEALPGAGPIANPEGWLFRIAHNAALDFLRRRAREQAYSDEDLDMIVDPANPTIDRQAA
HHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHH
SAGLHTFMRLPVTQRSSVIMMDVLGYSLQEISAMLDTSIPAVKAALHRGRDRLRQIANEP
HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
HDRPLPRLGAAERQLLNAYIDRFNARDFDAVRDMLAEEVRLELVAKTRLNGREEVGTYFG
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
NYSRAQDWHLVPGFVENRPAILVHDLNDPATRPAYFIVLAWHDGRLAAIGDFRHARYVAD
CCCCCCCCCCCCCHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCEEEECCHHHHHHHHC
SADMHAL
CCCCCCC
>Mature Secondary Structure
MIQADEVAERRLMNIPISGGQHGLFERLFAELRPKLHRYCARMTGSVFDGEDVLQETLAK
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AIEALPGAGPIANPEGWLFRIAHNAALDFLRRRAREQAYSDEDLDMIVDPANPTIDRQAA
HHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHH
SAGLHTFMRLPVTQRSSVIMMDVLGYSLQEISAMLDTSIPAVKAALHRGRDRLRQIANEP
HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
HDRPLPRLGAAERQLLNAYIDRFNARDFDAVRDMLAEEVRLELVAKTRLNGREEVGTYFG
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
NYSRAQDWHLVPGFVENRPAILVHDLNDPATRPAYFIVLAWHDGRLAAIGDFRHARYVAD
CCCCCCCCCCCCCHHCCCCEEEEECCCCCCCCCEEEEEEEEECCCEEEECCHHHHHHHHC
SADMHAL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA