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The map label for this gene is ddpC [H]

Identifier: 13471103

GI number: 13471103

Start: 812494

End: 813357

Strand: Direct

Name: ddpC [H]

Synonym: mlr0987

Alternate gene names: 13471103

Gene position: 812494-813357 (Clockwise)

Preceding gene: 13471102

Following gene: 13471104

Centisome position: 11.55

GC content: 62.5

Gene sequence:

>864_bases
ATGATCGAAAGGCGGAGCACCGATACGATGCCTGCGCGGCCCCGGTTCAACTGGCGGGATTTCTTCCGGCGAGCCGGTTG
GCTTGGAAGCGTTGGCATTATCGGCGTACCTGCCGTGACCGTTGCGGCCGTGCTGGCGCCCTGGATAACTCCATTCGACC
CGCAACTGCGTGTCGCGGTAGCCTATCTGCCGCCATCGGCTGGACATTGGTTCGGCACCGACGAGATCGGCCGCGACCTG
TTCTCGCGGGTTATCCTCGGCGTTCAATACACGTGGCTGCCAGGACTTTCCGTTATCGCGTTCACTCTCACTGTGGGGTC
CCTGGTCGGAATGATTTCGGGACTGATGGGCGACAAGGTTGATCTAGTCGTCATGCGGCTCGGCGACCTGTTCCTCGTGC
TGCCATCGACACTCATCTCACTCGCTGTGGTGGCCACGCTCGGACCCGGGCTCGTCAACACGATGATCGCGATCGCCATT
GTCTGGTGGCCTTGGTACGCGCGCATATCTCGTGATGAAATTCGGCGCCTCAAGGCCCGGCCACATTTCGAGGCGGCACG
TATCGGGGGGGTCGGCGGGCAGCGCCTCCTTTGGCGCTATTTGCTGCCAGGGGTGGTCCCGGCGCTGCTCATCGCGGCCT
CGCTGGATGTCGCCAACGTTATCATGACGTTGTCGCTGATGTCGTTCCTTGGTCTTGGATTGCCTGCACCGGCGCCCGAA
CTGGGAGCGATGACATCGCGCACTCTCGACAGTCTTACCGTCCATTGGTGGCTGCCGATGCTGCCTGCGGCGATCATATT
TCTCCTCTGCCTCCTCGCCAACCTTGCGGGCGACGGCGTTCGCGCCGCGCTGAGGGGGGTGTAA

Upstream 100 bases:

>100_bases
TCGAGGTTGCCGATCCGGATGCCATCATCGCAGCACCACAATCCGCCTACACGCGGTCTCTCATCGCGGCCATGCCGAGC
CTGCAGGCCGGAGACAGACG

Downstream 100 bases:

>100_bases
ATGTTGTCTTATCTCGCCAAGAGCGTTGCCGGCGCTATCGCCGTTCTCCTGTTGATGAGCTTCATCGTCTTCGGTCTCCA
GAGCATTATCCCCGCCGATC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MIERRSTDTMPARPRFNWRDFFRRAGWLGSVGIIGVPAVTVAAVLAPWITPFDPQLRVAVAYLPPSAGHWFGTDEIGRDL
FSRVILGVQYTWLPGLSVIAFTLTVGSLVGMISGLMGDKVDLVVMRLGDLFLVLPSTLISLAVVATLGPGLVNTMIAIAI
VWWPWYARISRDEIRRLKARPHFEAARIGGVGGQRLLWRYLLPGVVPALLIAASLDVANVIMTLSLMSFLGLGLPAPAPE
LGAMTSRTLDSLTVHWWLPMLPAAIIFLLCLLANLAGDGVRAALRGV

Sequences:

>Translated_287_residues
MIERRSTDTMPARPRFNWRDFFRRAGWLGSVGIIGVPAVTVAAVLAPWITPFDPQLRVAVAYLPPSAGHWFGTDEIGRDL
FSRVILGVQYTWLPGLSVIAFTLTVGSLVGMISGLMGDKVDLVVMRLGDLFLVLPSTLISLAVVATLGPGLVNTMIAIAI
VWWPWYARISRDEIRRLKARPHFEAARIGGVGGQRLLWRYLLPGVVPALLIAASLDVANVIMTLSLMSFLGLGLPAPAPE
LGAMTSRTLDSLTVHWWLPMLPAAIIFLLCLLANLAGDGVRAALRGV
>Mature_287_residues
MIERRSTDTMPARPRFNWRDFFRRAGWLGSVGIIGVPAVTVAAVLAPWITPFDPQLRVAVAYLPPSAGHWFGTDEIGRDL
FSRVILGVQYTWLPGLSVIAFTLTVGSLVGMISGLMGDKVDLVVMRLGDLFLVLPSTLISLAVVATLGPGLVNTMIAIAI
VWWPWYARISRDEIRRLKARPHFEAARIGGVGGQRLLWRYLLPGVVPALLIAASLDVANVIMTLSLMSFLGLGLPAPAPE
LGAMTSRTLDSLTVHWWLPMLPAAIIFLLCLLANLAGDGVRAALRGV

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=287, Percent_Identity=36.5853658536585, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1787054, Length=278, Percent_Identity=34.8920863309352, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=36.2139917695473, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789964, Length=249, Percent_Identity=35.7429718875502, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787498, Length=296, Percent_Identity=31.0810810810811, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787549, Length=282, Percent_Identity=30.8510638297872, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788505, Length=221, Percent_Identity=27.6018099547511, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31139; Mature: 31139

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERRSTDTMPARPRFNWRDFFRRAGWLGSVGIIGVPAVTVAAVLAPWITPFDPQLRVAV
CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
AYLPPSAGHWFGTDEIGRDLFSRVILGVQYTWLPGLSVIAFTLTVGSLVGMISGLMGDKV
EEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHH
DLVVMRLGDLFLVLPSTLISLAVVATLGPGLVNTMIAIAIVWWPWYARISRDEIRRLKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PHFEAARIGGVGGQRLLWRYLLPGVVPALLIAASLDVANVIMTLSLMSFLGLGLPAPAPE
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
LGAMTSRTLDSLTVHWWLPMLPAAIIFLLCLLANLAGDGVRAALRGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MIERRSTDTMPARPRFNWRDFFRRAGWLGSVGIIGVPAVTVAAVLAPWITPFDPQLRVAV
CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
AYLPPSAGHWFGTDEIGRDLFSRVILGVQYTWLPGLSVIAFTLTVGSLVGMISGLMGDKV
EEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHH
DLVVMRLGDLFLVLPSTLISLAVVATLGPGLVNTMIAIAIVWWPWYARISRDEIRRLKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PHFEAARIGGVGGQRLLWRYLLPGVVPALLIAASLDVANVIMTLSLMSFLGLGLPAPAPE
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
LGAMTSRTLDSLTVHWWLPMLPAAIIFLLCLLANLAGDGVRAALRGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]