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The map label for this gene is ddpA [H]

Identifier: 13471101

GI number: 13471101

Start: 809094

End: 810656

Strand: Direct

Name: ddpA [H]

Synonym: mlr0985

Alternate gene names: 13471101

Gene position: 809094-810656 (Clockwise)

Preceding gene: 13471098

Following gene: 13471102

Centisome position: 11.5

GC content: 58.54

Gene sequence:

>1563_bases
ATGCAGACCTCCCACTCTCGCACGACGAAGCGGTCCTCCGGGCGGAGCTTCGGCTTGCGGAGCTTGGTACTAGCCGTCTT
TTTCCTCCTTTCGTTGGCGCCCGCCTACGCCGCCAACGATGTGTTGCGTATTCCTTACGTCGCGGATGTCGGCACATTCG
ACCCGGACAATGGATTTGAGACCGGCGCGATCAGCGCGATCGACAGCGTCTACGAAGGGCTTGTCGAATACGTGCCGGGT
TCGACCAAGGTCGTTGGCCGGCTGGCCAAAAGCTGGGAAATCTCGGACGACGGGCTGACTTACACCTTCCACCTGGTCGA
CGGTGTCAAGTTCCATGATGGCACGCCTTTCAATGCTGCCGCAGTCATAAAGTCTTTCGAGCGCCGCCGAGACCATGGTC
TGATCTTCAGTTACTCGTTGGCTAACGTAAAGGAAATGCGGGCGGCCGACACTTCCACGGTCGTGCTCACACTTGTCCAT
CCTCAGCCATCGCTTTTGGATGCGCTATCCAGCCCGTGGGGACCCAAGGTCATCAGTCCGGTTGCACTTGACGAACATGA
CAACGGCAACTCCGCGACGACCTGGCTCAACGAGCATGCGGTTGGCACCGGCCCGTTCAAATTGGCAGAATTTAAGCGCG
GTCAGCGCTACGTGCTTGAACGCAATGACGACTACTGGGGCAAAAAACCGTTCTTCAGGCAGATCCAGATTTCGGTTGTG
CCCGATATCAGCCAGCAGATCCTTCAATTGCAGGCGGGGACGATCGACGCGGTGCCGCTCAACTATCCATTCGAGCAACT
CACCAGCCTGCCCGAGGGTCTGGAGATCACCACAGCTCCGAGCATGGTACCGTACGCTCTCTTCGTTAAGCCGGACTCGC
CGCTCCAAGATGCGGAAGTCCGAAAAGCCGTTTTGACGGCGATCAACCCGGCGCTTTGGATCAAGGACGCTTTCGGAGAG
TTCGCGACCCTGTCAAGGTCGGTCTATCCTAATGTCATGCTGGACCCGGCGAATCCGATCCGGTTCCCGACCGAATTCGA
CGCGGCGAGGGCCGCGATAGCGAAACATGGCCCGGTAAAATTGGTCATTGGCCTTCACAGCGCGGCCCCAACCTACAGCC
GCATCGCCGATCTGATGATAGCACAGCTGGCCTCGATCGGCGTAAAGGCAACTGCTTATGTGCTGCCCTCCGGCGCTGCT
TACACCTTGAAGGATGACAAGAACCCTCCGGATTTGCTACTCACGATCGCGAGCCCGGACGCCGCTCATCCGGAAAGCCA
GGCCAAGGTGTTCTTCGCGAAAGGCGGTGCCCTCAACTTTTTTGGCCGGGTCTTGCCAGAAGCCGATTCCATCGTGGATC
AGGCTGGACAGTTGACCGACGTCAAGGAACGCAACGCTCTCTACGAGAGGGCGGGACAGATGTATTTTGATGCCGGCATC
GTCATCCCGCTGGTCAACGTCAACGACGTGGTTGTCCACGCCAAGGGTCTGAAGGACCTTGGACTTCGCCCTGTTGATCC
GCCCGGTAACATCGACTTCGCCACCGTTCGCTGGGGACCCTGA

Upstream 100 bases:

>100_bases
CTCAAATTCGACAGGAGCCTCGTGCGCATCGTTGGCAAGAATTGATGCGGTACCCTTCCCCGCAGTGCCTTGCTGAGGGA
CCAGCTCAACGAGAGATTTG

Downstream 100 bases:

>100_bases
ACTCCGAACCATTCGGTTGGTTCGGGAGCAGGTCGGGCTCGCAGGATAAAATGGTCAAGGTTCCGCACCGAATGTCCGAA
CCCGTGGCCCAATCCGTCCT

Product: hemin-binding lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MQTSHSRTTKRSSGRSFGLRSLVLAVFFLLSLAPAYAANDVLRIPYVADVGTFDPDNGFETGAISAIDSVYEGLVEYVPG
STKVVGRLAKSWEISDDGLTYTFHLVDGVKFHDGTPFNAAAVIKSFERRRDHGLIFSYSLANVKEMRAADTSTVVLTLVH
PQPSLLDALSSPWGPKVISPVALDEHDNGNSATTWLNEHAVGTGPFKLAEFKRGQRYVLERNDDYWGKKPFFRQIQISVV
PDISQQILQLQAGTIDAVPLNYPFEQLTSLPEGLEITTAPSMVPYALFVKPDSPLQDAEVRKAVLTAINPALWIKDAFGE
FATLSRSVYPNVMLDPANPIRFPTEFDAARAAIAKHGPVKLVIGLHSAAPTYSRIADLMIAQLASIGVKATAYVLPSGAA
YTLKDDKNPPDLLLTIASPDAAHPESQAKVFFAKGGALNFFGRVLPEADSIVDQAGQLTDVKERNALYERAGQMYFDAGI
VIPLVNVNDVVVHAKGLKDLGLRPVDPPGNIDFATVRWGP

Sequences:

>Translated_520_residues
MQTSHSRTTKRSSGRSFGLRSLVLAVFFLLSLAPAYAANDVLRIPYVADVGTFDPDNGFETGAISAIDSVYEGLVEYVPG
STKVVGRLAKSWEISDDGLTYTFHLVDGVKFHDGTPFNAAAVIKSFERRRDHGLIFSYSLANVKEMRAADTSTVVLTLVH
PQPSLLDALSSPWGPKVISPVALDEHDNGNSATTWLNEHAVGTGPFKLAEFKRGQRYVLERNDDYWGKKPFFRQIQISVV
PDISQQILQLQAGTIDAVPLNYPFEQLTSLPEGLEITTAPSMVPYALFVKPDSPLQDAEVRKAVLTAINPALWIKDAFGE
FATLSRSVYPNVMLDPANPIRFPTEFDAARAAIAKHGPVKLVIGLHSAAPTYSRIADLMIAQLASIGVKATAYVLPSGAA
YTLKDDKNPPDLLLTIASPDAAHPESQAKVFFAKGGALNFFGRVLPEADSIVDQAGQLTDVKERNALYERAGQMYFDAGI
VIPLVNVNDVVVHAKGLKDLGLRPVDPPGNIDFATVRWGP
>Mature_520_residues
MQTSHSRTTKRSSGRSFGLRSLVLAVFFLLSLAPAYAANDVLRIPYVADVGTFDPDNGFETGAISAIDSVYEGLVEYVPG
STKVVGRLAKSWEISDDGLTYTFHLVDGVKFHDGTPFNAAAVIKSFERRRDHGLIFSYSLANVKEMRAADTSTVVLTLVH
PQPSLLDALSSPWGPKVISPVALDEHDNGNSATTWLNEHAVGTGPFKLAEFKRGQRYVLERNDDYWGKKPFFRQIQISVV
PDISQQILQLQAGTIDAVPLNYPFEQLTSLPEGLEITTAPSMVPYALFVKPDSPLQDAEVRKAVLTAINPALWIKDAFGE
FATLSRSVYPNVMLDPANPIRFPTEFDAARAAIAKHGPVKLVIGLHSAAPTYSRIADLMIAQLASIGVKATAYVLPSGAA
YTLKDDKNPPDLLLTIASPDAAHPESQAKVFFAKGGALNFFGRVLPEADSIVDQAGQLTDVKERNALYERAGQMYFDAGI
VIPLVNVNDVVVHAKGLKDLGLRPVDPPGNIDFATVRWGP

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=510, Percent_Identity=28.6274509803922, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1787052, Length=512, Percent_Identity=27.9296875, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1789966, Length=492, Percent_Identity=24.5934959349593, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789887, Length=531, Percent_Identity=23.728813559322, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1787551, Length=507, Percent_Identity=27.0216962524655, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789397, Length=522, Percent_Identity=23.3716475095785, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56485; Mature: 56485

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTSHSRTTKRSSGRSFGLRSLVLAVFFLLSLAPAYAANDVLRIPYVADVGTFDPDNGFE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCEEECCEEECCCCCCCCCCCC
TGAISAIDSVYEGLVEYVPGSTKVVGRLAKSWEISDDGLTYTFHLVDGVKFHDGTPFNAA
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCEEECCCCCCHHH
AVIKSFERRRDHGLIFSYSLANVKEMRAADTSTVVLTLVHPQPSLLDALSSPWGPKVISP
HHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCC
VALDEHDNGNSATTWLNEHAVGTGPFKLAEFKRGQRYVLERNDDYWGKKPFFRQIQISVV
EEECCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEC
PDISQQILQLQAGTIDAVPLNYPFEQLTSLPEGLEITTAPSMVPYALFVKPDSPLQDAEV
CCHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCEEEECCCCCCEEEEECCCCCCCHHHH
RKAVLTAINPALWIKDAFGEFATLSRSVYPNVMLDPANPIRFPTEFDAARAAIAKHGPVK
HHHHHHHCCHHHEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCEE
LVIGLHSAAPTYSRIADLMIAQLASIGVKATAYVLPSGAAYTLKDDKNPPDLLLTIASPD
EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCEEEEEECCC
AAHPESQAKVFFAKGGALNFFGRVLPEADSIVDQAGQLTDVKERNALYERAGQMYFDAGI
CCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCE
VIPLVNVNDVVVHAKGLKDLGLRPVDPPGNIDFATVRWGP
EEEEECCCEEEEEECCHHHCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MQTSHSRTTKRSSGRSFGLRSLVLAVFFLLSLAPAYAANDVLRIPYVADVGTFDPDNGFE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCEEECCEEECCCCCCCCCCCC
TGAISAIDSVYEGLVEYVPGSTKVVGRLAKSWEISDDGLTYTFHLVDGVKFHDGTPFNAA
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEEECCEEECCCCCCHHH
AVIKSFERRRDHGLIFSYSLANVKEMRAADTSTVVLTLVHPQPSLLDALSSPWGPKVISP
HHHHHHHHHCCCCEEEEEEHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCC
VALDEHDNGNSATTWLNEHAVGTGPFKLAEFKRGQRYVLERNDDYWGKKPFFRQIQISVV
EEECCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEC
PDISQQILQLQAGTIDAVPLNYPFEQLTSLPEGLEITTAPSMVPYALFVKPDSPLQDAEV
CCHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCEEEECCCCCCEEEEECCCCCCCHHHH
RKAVLTAINPALWIKDAFGEFATLSRSVYPNVMLDPANPIRFPTEFDAARAAIAKHGPVK
HHHHHHHCCHHHEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCEE
LVIGLHSAAPTYSRIADLMIAQLASIGVKATAYVLPSGAAYTLKDDKNPPDLLLTIASPD
EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCEEEEEECCC
AAHPESQAKVFFAKGGALNFFGRVLPEADSIVDQAGQLTDVKERNALYERAGQMYFDAGI
CCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEECCE
VIPLVNVNDVVVHAKGLKDLGLRPVDPPGNIDFATVRWGP
EEEEECCCEEEEEECCHHHCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]