Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
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Accession | NC_002678 |
Length | 7,036,071 |
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The map label for this gene is ycbK [C]
Identifier: 13471064
GI number: 13471064
Start: 757045
End: 758343
Strand: Direct
Name: ycbK [C]
Synonym: mlr0938
Alternate gene names: 13471064
Gene position: 757045-758343 (Clockwise)
Preceding gene: 13471063
Following gene: 13471067
Centisome position: 10.76
GC content: 65.59
Gene sequence:
>1299_bases GTGCTGCGCCGAGGACGTACCGACCGGACATCGAGGGGGAATTTGACTTTGAAATCAGCAGGATGGAGCCTAGCAAAGGG AGAACGCAGCGCCATCTTGGCAGCGCTCTGCTGTGTGCTCCTGGCCTCCTGCACATCGGCCGGCGACCCGACAATGTCGG TCGGAATGCCTGGCTACAATGCCTCCGCCTCCGACGTTAACGTGGCCGCCACCGGCAAGCCCATCGCCACCGCCGATTCG ACTTCGCAGACAACGGCCACGCAAACGACCGTGATGAGCGAAGGCGACACCGCACTCCCCGAAAAAGTCGCTTACGTACC GATGGCCAAGCCGCAAGCAGCCTTTCCGCTGATAACGCCGGCTGGCGCTGAAACGATCGCGGGACAAACGCCGCAGGCCT TGCAGCAGCCGGCCCAGACGGCACAGCAGACCGACGCGGTCGCCCAGAAGATCGCTGCCGCCGATGCCGCGGTGACAACG CCGAAGCCAGCCACGGCGCCGGTGATGAACAATCCGGTCTATGTGACCGCGGGTGAGGCGCCACAAGCAGAGGCGCCAAA GAAACGTGGCTTCCTGGCCTCGATGTTCGGCGCCACGCCCGCTTCGGCCACACCGGCTCCGCTGATCAACACGCGATCGG GCGAACAGCCGACCGCACAGGCCAAACCCGCGCCCGCGGCGGCGGCAAAGCCGATCATCACGTTGGCCTCGGCCGACTCC ACGGCAAAGCCAATACAATTGGCCTCGACCGGTGACGACGCCGGTCATATCACCGGCAGCGATGCCTTGCCTGGCGTGCG TCAGACCGCCCTGTTCGAGATCAAGCGCAAATCCGGCCTCGACGACGAAAGCGACGTCGACCTCAATGAGGATGAGGGTC CAATCGGCGGCAGCTATCAGGTTGCGTCGGCCGCCGGCATGGCCCGGCTCGCGCCCAACGGCCTGCTGAAGCAGAACGAA AGCGTCGATGTCGCCTGCCTGAAGCCGTCGCTGGTGCGCGTGCTGAAGACGATCGAAGGCCATTACGGCCGCAAGATGGT GGTCACGTCAGGCTACCGCGACCCTGCTCGCAACCGCCGCGCCAACGGCGCCAAGAACTCGCTGCACATGTACTGCGCCG CCGCCGACATCCAGGTGCCCGGCGTCTCCAAATGGGAACTGGCGAACTACATCAGGACCATGCCCGGCCGCGGTGGCGTC GGCACCTATTGCCACACCGAATCGGTACACGTCGACGTCGGCCCCGAGCGCGACTGGAACTGGCGCTGCCGCCGGCGCAG CGGCGGTGACGACGGCTAA
Upstream 100 bases:
>100_bases TAATTCGGCAATCGCTGCAAAAATACTTCCAGGCTTGCGGATTTGACACAGGTCTCGTTTCCGGATCGGAGACAAAGGTC ACCTTGGACAGCGACTTCCA
Downstream 100 bases:
>100_bases AGGGCGCATTCGAGATTAACCGGAGCGTCCCCAACTTCGTCATCCACGGGCGGAGCAATGGGCGTTTTCGCTAATCACCA AGCGCCCAGTGGGTGATGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MLRRGRTDRTSRGNLTLKSAGWSLAKGERSAILAALCCVLLASCTSAGDPTMSVGMPGYNASASDVNVAATGKPIATADS TSQTTATQTTVMSEGDTALPEKVAYVPMAKPQAAFPLITPAGAETIAGQTPQALQQPAQTAQQTDAVAQKIAAADAAVTT PKPATAPVMNNPVYVTAGEAPQAEAPKKRGFLASMFGATPASATPAPLINTRSGEQPTAQAKPAPAAAAKPIITLASADS TAKPIQLASTGDDAGHITGSDALPGVRQTALFEIKRKSGLDDESDVDLNEDEGPIGGSYQVASAAGMARLAPNGLLKQNE SVDVACLKPSLVRVLKTIEGHYGRKMVVTSGYRDPARNRRANGAKNSLHMYCAAADIQVPGVSKWELANYIRTMPGRGGV GTYCHTESVHVDVGPERDWNWRCRRRSGGDDG
Sequences:
>Translated_432_residues MLRRGRTDRTSRGNLTLKSAGWSLAKGERSAILAALCCVLLASCTSAGDPTMSVGMPGYNASASDVNVAATGKPIATADS TSQTTATQTTVMSEGDTALPEKVAYVPMAKPQAAFPLITPAGAETIAGQTPQALQQPAQTAQQTDAVAQKIAAADAAVTT PKPATAPVMNNPVYVTAGEAPQAEAPKKRGFLASMFGATPASATPAPLINTRSGEQPTAQAKPAPAAAAKPIITLASADS TAKPIQLASTGDDAGHITGSDALPGVRQTALFEIKRKSGLDDESDVDLNEDEGPIGGSYQVASAAGMARLAPNGLLKQNE SVDVACLKPSLVRVLKTIEGHYGRKMVVTSGYRDPARNRRANGAKNSLHMYCAAADIQVPGVSKWELANYIRTMPGRGGV GTYCHTESVHVDVGPERDWNWRCRRRSGGDDG >Mature_432_residues MLRRGRTDRTSRGNLTLKSAGWSLAKGERSAILAALCCVLLASCTSAGDPTMSVGMPGYNASASDVNVAATGKPIATADS TSQTTATQTTVMSEGDTALPEKVAYVPMAKPQAAFPLITPAGAETIAGQTPQALQQPAQTAQQTDAVAQKIAAADAAVTT PKPATAPVMNNPVYVTAGEAPQAEAPKKRGFLASMFGATPASATPAPLINTRSGEQPTAQAKPAPAAAAKPIITLASADS TAKPIQLASTGDDAGHITGSDALPGVRQTALFEIKRKSGLDDESDVDLNEDEGPIGGSYQVASAAGMARLAPNGLLKQNE SVDVACLKPSLVRVLKTIEGHYGRKMVVTSGYRDPARNRRANGAKNSLHMYCAAADIQVPGVSKWELANYIRTMPGRGGV GTYCHTESVHVDVGPERDWNWRCRRRSGGDDG
Specific function: Unknown
COG id: COG3108
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44762; Mature: 44762
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRRGRTDRTSRGNLTLKSAGWSLAKGERSAILAALCCVLLASCTSAGDPTMSVGMPGYN CCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC ASASDVNVAATGKPIATADSTSQTTATQTTVMSEGDTALPEKVAYVPMAKPQAAFPLITP CCCCCEEEEECCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCEEECCCCCCCCCCCEECC AGAETIAGQTPQALQQPAQTAQQTDAVAQKIAAADAAVTTPKPATAPVMNNPVYVTAGEA CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC PQAEAPKKRGFLASMFGATPASATPAPLINTRSGEQPTAQAKPAPAAAAKPIITLASADS CCCCCCHHCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHCCCEEEEECCCC TAKPIQLASTGDDAGHITGSDALPGVRQTALFEIKRKSGLDDESDVDLNEDEGPIGGSYQ CCCCEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE VASAAGMARLAPNGLLKQNESVDVACLKPSLVRVLKTIEGHYGRKMVVTSGYRDPARNRR HHHHCCHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCC ANGAKNSLHMYCAAADIQVPGVSKWELANYIRTMPGRGGVGTYCHTESVHVDVGPERDWN CCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCEEEEECCCCCCCC WRCRRRSGGDDG CEEECCCCCCCC >Mature Secondary Structure MLRRGRTDRTSRGNLTLKSAGWSLAKGERSAILAALCCVLLASCTSAGDPTMSVGMPGYN CCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC ASASDVNVAATGKPIATADSTSQTTATQTTVMSEGDTALPEKVAYVPMAKPQAAFPLITP CCCCCEEEEECCCCCCCCCCCCCCCHHHEEEECCCCCCCCCCEEECCCCCCCCCCCEECC AGAETIAGQTPQALQQPAQTAQQTDAVAQKIAAADAAVTTPKPATAPVMNNPVYVTAGEA CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC PQAEAPKKRGFLASMFGATPASATPAPLINTRSGEQPTAQAKPAPAAAAKPIITLASADS CCCCCCHHCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHCCCEEEEECCCC TAKPIQLASTGDDAGHITGSDALPGVRQTALFEIKRKSGLDDESDVDLNEDEGPIGGSYQ CCCCEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE VASAAGMARLAPNGLLKQNESVDVACLKPSLVRVLKTIEGHYGRKMVVTSGYRDPARNRR HHHHCCHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCC ANGAKNSLHMYCAAADIQVPGVSKWELANYIRTMPGRGGVGTYCHTESVHVDVGPERDWN CCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEECCEEEEECCCCCCCC WRCRRRSGGDDG CEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA