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The map label for this gene is ssb

Identifier: 13470917

GI number: 13470917

Start: 584695

End: 585213

Strand: Reverse

Name: ssb

Synonym: mll0743

Alternate gene names: 13470917

Gene position: 585213-584695 (Counterclockwise)

Preceding gene: 13470926

Following gene: 13470916

Centisome position: 8.32

GC content: 63.2

Gene sequence:

>519_bases
ATGGCGGGTAGCGTCAATAAGGTCATTCTGGTCGGCAATCTCGGCGCGGACCCTGAAATCCGCCGCCTGAACTCGGGCGA
GCCGGTCGTCAACATCCGTATCGCCACGTCGGAAAGCTGGCGCGACAAGAATTCCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACAATGTCGTCATCTTCAATGAGGGCATCGCCAAGGTGGCCGAGCAGTATCTGAAGAAGGGCATGAAGGTCTATGTC
GAGGGCCAGCTGCAGACGCGCAAATGGCAGGACCAGACCGGCGCGGACAAGTACACGACGGAAGTCGTGCTGCAGAGATT
CCGCGGCGAACTGCAGATGCTCGACGGACGCCAGGGTGAGGGCGGCCAGGTCGGTGGTTATTCCGGCGGCGGCAGCAGCC
GCGGTTCCGATTTCGGCCAATCCGGCCCGAACGAAAGCTTCAACCGTGGCGGCGGCGCTCCCAGGGGCGGCGGTGGCGGC
GGTTCGTCGCGCGAACTGGACGATGAGATCCCGTTCTGA

Upstream 100 bases:

>100_bases
AAAACCTTGTGGGAAAAGCCAGCCTTAGCAGGCGGCAGGCGTGCGCAGCCTGTAAGGTGCTGCGACAAAAATTTGTTTCG
GATGAGCGCGGAGAAAAATC

Downstream 100 bases:

>100_bases
TCGAAAGCAACACCAAACGGCTGACGTTGTGTGATCGATACGCCCCGAGGGTCCCGCATGGACTTTCGGGGTTTTGCATT
GTTGATTTGGGATCAAAGGA

Product: single-strand DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNEGIAKVAEQYLKKGMKVYV
EGQLQTRKWQDQTGADKYTTEVVLQRFRGELQMLDGRQGEGGQVGGYSGGGSSRGSDFGQSGPNESFNRGGGAPRGGGGG
GSSRELDDEIPF

Sequences:

>Translated_172_residues
MAGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNEGIAKVAEQYLKKGMKVYV
EGQLQTRKWQDQTGADKYTTEVVLQRFRGELQMLDGRQGEGGQVGGYSGGGSSRGSDFGQSGPNESFNRGGGAPRGGGGG
GSSRELDDEIPF
>Mature_171_residues
AGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIFNEGIAKVAEQYLKKGMKVYVE
GQLQTRKWQDQTGADKYTTEVVLQRFRGELQMLDGRQGEGGQVGGYSGGGSSRGSDFGQSGPNESFNRGGGAPRGGGGGG
SSRELDDEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Homo sapiens, GI4507231, Length=108, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1790494, Length=175, Percent_Identity=53.1428571428571, Blast_Score=151, Evalue=2e-38,
Organism=Drosophila melanogaster, GI85725234, Length=100, Percent_Identity=34, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24647376, Length=100, Percent_Identity=34, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSB_RHILO (Q98M41)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_102486.1
- ProteinModelPortal:   Q98M41
- SMR:   Q98M41
- GeneID:   1225149
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll0743
- NMPDR:   fig|266835.1.peg.591
- HOGENOM:   HBG755544
- OMA:   IATSENW
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 18564; Mature: 18433

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIF
CCCCCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
NEGIAKVAEQYLKKGMKVYVEGQLQTRKWQDQTGADKYTTEVVLQRFRGELQMLDGRQGE
CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCC
GGQVGGYSGGGSSRGSDFGQSGPNESFNRGGGAPRGGGGGGSSRELDDEIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSVNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTEWHNVVIF
CCCCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
NEGIAKVAEQYLKKGMKVYVEGQLQTRKWQDQTGADKYTTEVVLQRFRGELQMLDGRQGE
CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCC
GGQVGGYSGGGSSRGSDFGQSGPNESFNRGGGAPRGGGGGGSSRELDDEIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968