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The map label for this gene is ybfI [H]

Identifier: 13470912

GI number: 13470912

Start: 580414

End: 581280

Strand: Reverse

Name: ybfI [H]

Synonym: mll0736

Alternate gene names: 13470912

Gene position: 581280-580414 (Counterclockwise)

Preceding gene: 13470916

Following gene: 161621455

Centisome position: 8.26

GC content: 66.9

Gene sequence:

>867_bases
ATGATAGCGACGACCCGCACTCTGGCATTCGGACCCGGCTGGCATGTGGCGGATGTGATCTGCACGGCCGGGGCGGGCGA
CCGGCCGTTCGAGGAAGCCCATCAGGAGTTCTGTGTTGCGGCGGTCACCAGCGGCACGTTCCGTTACCGCGCGCAGCAAG
GCACCGCCATGCTGGCGCCGGGCGCGCTGCTGCTCGGCAATTCCGGCACCTGCTATGAATGCGGGCATGAGCATGGCAGC
GGCGATCGCTGTCTCTCGTTCCATTTCAAACCTGCCTACATGGAACGGATCGTCGCCGGTGTGCCGGGCGCGAGCACGCT
TGCCTTCGAAGCCCCGCGCCTGCCGCCCTTGCCGGCCCTGGCGCCTTTGTTGGCTGAGGCGGAAGCCGCGCGGGAGACGG
GCGACAGCGAGGCCTTCGAGGAACTCGGTGTGCGCATTGCTGCTGCCGCTGTGGCCACGATTTCCGGCGCCACGTCCATC
AGGCGCGGACCTAGCCGCCGCGACCAGAAACGGGTGGCCGAAGCCGTGCGACGGATCGAACTGGATGCCGACGGGCCGGT
TTCGCTGTCGACGCTGGCGGATGAGACGGCGACCAGTCCCTATCATTTCCTGCGCATTTTCCGGCAGGTTGCCGGCATGA
CGCCCTACCAGTTCTTGCTCAAGACCCGCTTGCACCGGGCAGCGGTGCAGCTGCGCCTGTCGGATGATGCGGTCTCGGCG
ATCGCCTTCGATGCCGGCTTCAACGACCTGTCGACGTTCAACCGCCGGTTTCGACGGGTCATGGGCGAGACGCCGGGCGA
TTATCGCGCCAGCCGATCGGGCCGCACCGTCATACGCGCGCCTAAAGCGCGTCGAGACGCGCTTTAG

Upstream 100 bases:

>100_bases
AAAAGGGTCGAACATGACTGCGGTCTCTTTCTGTCAGGAGACCGCGAGGAGTAGGCGCTGACGGGGTTCTGGGCTTGGGA
AAAATTGCTATGTTTCGGCC

Downstream 100 bases:

>100_bases
GTTTTGTTTTTATGCATGTTGTTCTCCCAAAACCGAGGTCACTTTTGGGCGACATGCATTAGGCCGAGGCAGGCTCAGTC
CGAGGTCGGGCCGCACCAGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MIATTRTLAFGPGWHVADVICTAGAGDRPFEEAHQEFCVAAVTSGTFRYRAQQGTAMLAPGALLLGNSGTCYECGHEHGS
GDRCLSFHFKPAYMERIVAGVPGASTLAFEAPRLPPLPALAPLLAEAEAARETGDSEAFEELGVRIAAAAVATISGATSI
RRGPSRRDQKRVAEAVRRIELDADGPVSLSTLADETATSPYHFLRIFRQVAGMTPYQFLLKTRLHRAAVQLRLSDDAVSA
IAFDAGFNDLSTFNRRFRRVMGETPGDYRASRSGRTVIRAPKARRDAL

Sequences:

>Translated_288_residues
MIATTRTLAFGPGWHVADVICTAGAGDRPFEEAHQEFCVAAVTSGTFRYRAQQGTAMLAPGALLLGNSGTCYECGHEHGS
GDRCLSFHFKPAYMERIVAGVPGASTLAFEAPRLPPLPALAPLLAEAEAARETGDSEAFEELGVRIAAAAVATISGATSI
RRGPSRRDQKRVAEAVRRIELDADGPVSLSTLADETATSPYHFLRIFRQVAGMTPYQFLLKTRLHRAAVQLRLSDDAVSA
IAFDAGFNDLSTFNRRFRRVMGETPGDYRASRSGRTVIRAPKARRDAL
>Mature_288_residues
MIATTRTLAFGPGWHVADVICTAGAGDRPFEEAHQEFCVAAVTSGTFRYRAQQGTAMLAPGALLLGNSGTCYECGHEHGS
GDRCLSFHFKPAYMERIVAGVPGASTLAFEAPRLPPLPALAPLLAEAEAARETGDSEAFEELGVRIAAAAVATISGATSI
RRGPSRRDQKRVAEAVRRIELDADGPVSLSTLADETATSPYHFLRIFRQVAGMTPYQFLLKTRLHRAAVQLRLSDDAVSA
IAFDAGFNDLSTFNRRFRRVMGETPGDYRASRSGRTVIRAPKARRDAL

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=101, Percent_Identity=33.6633663366337, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31052; Mature: 31052

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATTRTLAFGPGWHVADVICTAGAGDRPFEEAHQEFCVAAVTSGTFRYRAQQGTAMLAP
CCCCCCEEEECCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECC
GALLLGNSGTCYECGHEHGSGDRCLSFHFKPAYMERIVAGVPGASTLAFEAPRLPPLPAL
CEEEECCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCHHH
APLLAEAEAARETGDSEAFEELGVRIAAAAVATISGATSIRRGPSRRDQKRVAEAVRRIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHEE
LDADGPVSLSTLADETATSPYHFLRIFRQVAGMTPYQFLLKTRLHRAAVQLRLSDDAVSA
CCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCHHHH
IAFDAGFNDLSTFNRRFRRVMGETPGDYRASRSGRTVIRAPKARRDAL
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHCCCC
>Mature Secondary Structure
MIATTRTLAFGPGWHVADVICTAGAGDRPFEEAHQEFCVAAVTSGTFRYRAQQGTAMLAP
CCCCCCEEEECCCCHHHHHHEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECC
GALLLGNSGTCYECGHEHGSGDRCLSFHFKPAYMERIVAGVPGASTLAFEAPRLPPLPAL
CEEEECCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCCCCHHH
APLLAEAEAARETGDSEAFEELGVRIAAAAVATISGATSIRRGPSRRDQKRVAEAVRRIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHEE
LDADGPVSLSTLADETATSPYHFLRIFRQVAGMTPYQFLLKTRLHRAAVQLRLSDDAVSA
CCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEECCCHHHH
IAFDAGFNDLSTFNRRFRRVMGETPGDYRASRSGRTVIRAPKARRDAL
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]