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The map label for this gene is ycfQ [H]

Identifier: 13470746

GI number: 13470746

Start: 395765

End: 396379

Strand: Direct

Name: ycfQ [H]

Synonym: mlr0535

Alternate gene names: 13470746

Gene position: 395765-396379 (Clockwise)

Preceding gene: 13470743

Following gene: 13470747

Centisome position: 5.62

GC content: 65.69

Gene sequence:

>615_bases
ATGTCGGACAGAGGACGTCCCCGTACCTTCGACCGAACCGCCGCCCTGCGGCGCGCGATGGAGCTGTTTTGGGCCAAGGG
CTATGGGGGTACGTCGATCGCCGAGTTGACGACGGCGATGGGTATCAATTCGCCCAGCCTCTATGCCGCCTTCGGCAGCA
AGGAGGCGCTGTTCCTCGAAGCGACCGAATATTACACGCAAGCCGAAGGAACCGAGATATGGGCCGCCTTGGACGAGGCG
CCGACGGCATGCCAGGCGATCGAGAATTTTCTGCGGCGCACAGCCAAGGCCTATTCGCAGACCGATCGGCCGCAGGGCTG
CTTGATTGCGCTGGGCGCCCTGCATGAGGACTCAAGCAGCGGTGCCATCTGCACGGATTTGCGCCGCCGCCGCGCCGAAA
ATCTTACCACCCTGCGCAAGCGCCTGGAGCGCGGTGTGGCCGAGGGCGAATTGCCTGCCGACTTCGACTGCGATGCCGTG
GCGACCTTCTACGCCACGGTCCAGCACGGCATGTCCATCCAGGCGCGTGACGGCGCGTCGTGCCTCGCGCTGATGGCGAC
CGTCGCTGGCGCGATGGCTGCCTGGCAGGTACTCGCAGGCCCCGACAGAGCGTGA

Upstream 100 bases:

>100_bases
CGGTTTCTCCATTTATGTAGCGATTGATACACAAATATCTGGCAGCCTTGCTCGACCGCGTCAACTCATTTATGTATCGA
TCAACACAGAAAAGAAGAAC

Downstream 100 bases:

>100_bases
CAAACGCTGGCCATTATGGTGGAAATCCAGCCAAACGCGCGGTCGGGAGGAACAAGCTGTGAAAAAGGGTTATCGCGAAC
TGCTGGACGAGGCCAACGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSDRGRPRTFDRTAALRRAMELFWAKGYGGTSIAELTTAMGINSPSLYAAFGSKEALFLEATEYYTQAEGTEIWAALDEA
PTACQAIENFLRRTAKAYSQTDRPQGCLIALGALHEDSSSGAICTDLRRRRAENLTTLRKRLERGVAEGELPADFDCDAV
ATFYATVQHGMSIQARDGASCLALMATVAGAMAAWQVLAGPDRA

Sequences:

>Translated_204_residues
MSDRGRPRTFDRTAALRRAMELFWAKGYGGTSIAELTTAMGINSPSLYAAFGSKEALFLEATEYYTQAEGTEIWAALDEA
PTACQAIENFLRRTAKAYSQTDRPQGCLIALGALHEDSSSGAICTDLRRRRAENLTTLRKRLERGVAEGELPADFDCDAV
ATFYATVQHGMSIQARDGASCLALMATVAGAMAAWQVLAGPDRA
>Mature_203_residues
SDRGRPRTFDRTAALRRAMELFWAKGYGGTSIAELTTAMGINSPSLYAAFGSKEALFLEATEYYTQAEGTEIWAALDEAP
TACQAIENFLRRTAKAYSQTDRPQGCLIALGALHEDSSSGAICTDLRRRRAENLTTLRKRLERGVAEGELPADFDCDAVA
TFYATVQHGMSIQARDGASCLALMATVAGAMAAWQVLAGPDRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=202, Percent_Identity=36.1386138613861, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI87082397, Length=194, Percent_Identity=34.020618556701, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22040; Mature: 21909

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRGRPRTFDRTAALRRAMELFWAKGYGGTSIAELTTAMGINSPSLYAAFGSKEALFLE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEEE
ATEYYTQAEGTEIWAALDEAPTACQAIENFLRRTAKAYSQTDRPQGCLIALGALHEDSSS
HHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
GAICTDLRRRRAENLTTLRKRLERGVAEGELPADFDCDAVATFYATVQHGMSIQARDGAS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCHH
CLALMATVAGAMAAWQVLAGPDRA
HHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDRGRPRTFDRTAALRRAMELFWAKGYGGTSIAELTTAMGINSPSLYAAFGSKEALFLE
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEEE
ATEYYTQAEGTEIWAALDEAPTACQAIENFLRRTAKAYSQTDRPQGCLIALGALHEDSSS
HHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
GAICTDLRRRRAENLTTLRKRLERGVAEGELPADFDCDAVATFYATVQHGMSIQARDGAS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCHH
CLALMATVAGAMAAWQVLAGPDRA
HHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]