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The map label for this gene is rpoE [H]

Identifier: 13470641

GI number: 13470641

Start: 294149

End: 294700

Strand: Direct

Name: rpoE [H]

Synonym: mlr0407

Alternate gene names: 13470641

Gene position: 294149-294700 (Clockwise)

Preceding gene: 13470640

Following gene: 13470642

Centisome position: 4.18

GC content: 64.86

Gene sequence:

>552_bases
ATGCTCCGTAAACAGGGCATGAAACGGTCGATGCCACGCTTTGACATCATAGGACAGCTCGGATCGCTGCGGCGCTACGC
ACAGTCGCTGACGCGTGACAGCGCGGATGCCGAGGATCTCGTGCATGACGCACTGGTGCGCGCCTATGAGCGTCGCGGCA
CCTTCCGCTCCGGCGGAAATTTACGGGCCTGGCTGCTGTCCATCGTCCACAACGCGTTTATTGACCGCATGCGTTCGCGC
CGCTCGGAAGCCGTGCGCATCGAACAGGCCGGATACCTCGCCGATGCCGCCACGCCGGCGCCGCAGGAGCATTCGGTGCG
CCTGGCGCAGGTGCGGGACGCCTTTTTCAATTTGCCGGAAGAGCAGCGCTCGGCGCTGCATCTGGTCGCCATCGAAGGGC
TTTCCTATCAGCAGGCGGCCAATGCCACCGGCGTGCCGCTGGGCACGCTGATGTCACGCATCGGCAGGGCACGCGCCGCC
CTGCGTCAGATGGAAGACGCCGCCCCGGCGCGCGGAAAAAATCATCTCAGGATCGTGGGAGGTGAGCCATGA

Upstream 100 bases:

>100_bases
CGGCAAAACCGCTTCTCCGGTGAAAGCCTGGCAGGCGAGGACCGGCGAACACAATCCCTCCTGCAAAGAAAATGGCACGG
GTCGGGATTAATATCCCCAC

Downstream 100 bases:

>100_bases
GCGCTCTTGTCGACCCTGTGACGGACACCGATCTCGACGCCTATGTCGACGACCAGCTGGATGTCACCCGCCGCATCGAG
GTCGAAGCCTTCCTGTCGAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MLRKQGMKRSMPRFDIIGQLGSLRRYAQSLTRDSADAEDLVHDALVRAYERRGTFRSGGNLRAWLLSIVHNAFIDRMRSR
RSEAVRIEQAGYLADAATPAPQEHSVRLAQVRDAFFNLPEEQRSALHLVAIEGLSYQQAANATGVPLGTLMSRIGRARAA
LRQMEDAAPARGKNHLRIVGGEP

Sequences:

>Translated_183_residues
MLRKQGMKRSMPRFDIIGQLGSLRRYAQSLTRDSADAEDLVHDALVRAYERRGTFRSGGNLRAWLLSIVHNAFIDRMRSR
RSEAVRIEQAGYLADAATPAPQEHSVRLAQVRDAFFNLPEEQRSALHLVAIEGLSYQQAANATGVPLGTLMSRIGRARAA
LRQMEDAAPARGKNHLRIVGGEP
>Mature_183_residues
MLRKQGMKRSMPRFDIIGQLGSLRRYAQSLTRDSADAEDLVHDALVRAYERRGTFRSGGNLRAWLLSIVHNAFIDRMRSR
RSEAVRIEQAGYLADAATPAPQEHSVRLAQVRDAFFNLPEEQRSALHLVAIEGLSYQQAANATGVPLGTLMSRIGRARAA
LRQMEDAAPARGKNHLRIVGGEP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=142, Percent_Identity=31.6901408450704, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20359; Mature: 20359

Theoretical pI: Translated: 11.39; Mature: 11.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKQGMKRSMPRFDIIGQLGSLRRYAQSLTRDSADAEDLVHDALVRAYERRGTFRSGGN
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
LRAWLLSIVHNAFIDRMRSRRSEAVRIEQAGYLADAATPAPQEHSVRLAQVRDAFFNLPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHCCCH
EQRSALHLVAIEGLSYQQAANATGVPLGTLMSRIGRARAALRQMEDAAPARGKNHLRIVG
HHHHHEEHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
GEP
CCC
>Mature Secondary Structure
MLRKQGMKRSMPRFDIIGQLGSLRRYAQSLTRDSADAEDLVHDALVRAYERRGTFRSGGN
CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
LRAWLLSIVHNAFIDRMRSRRSEAVRIEQAGYLADAATPAPQEHSVRLAQVRDAFFNLPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHCCCH
EQRSALHLVAIEGLSYQQAANATGVPLGTLMSRIGRARAALRQMEDAAPARGKNHLRIVG
HHHHHEEHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
GEP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]