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The map label for this gene is oppF

Identifier: 13358123

GI number: 13358123

Start: 698794

End: 700113

Strand: Reverse

Name: oppF

Synonym: UU559

Alternate gene names: 13358123

Gene position: 700113-698794 (Counterclockwise)

Preceding gene: 13358124

Following gene: 13358122

Centisome position: 93.13

GC content: 28.33

Gene sequence:

>1320_bases
ATGAGTGATACAAACCAGAAAAAAGCCTTTTTTAATCACAAAAAACGTTTTTGTTTACCAGACAAAATTACTATTCGCCC
AGTTACTGAAGGTTTAATAGAACGATTAAATGCAAATCCTGAAAAAAAGCGTTTAGTACAAGTACGTCACTTAGATGTTA
CTTATGGTCATGGATTTAAAAAATTTAGAGCGGTTAAAGATATTTCATTTAATATTTATCAAGGTGAAGTTTTAGGATTA
GTTGGTGAATCAGGATCTGGTAAATCAACAACCGGATCTGCGTTAATTGGTTTAGCGCGTCATAGTTTTGGGGATATTAT
TATTGATGGTATTAAATTGCCTAAACAAGGTGAGAAAGTTACTAAAGAACTAACTGATTTTATGGTTAATAATGTGCAGA
TGATTTTTCAAGATCCATCGAATTCACTTAATCCTTATGTAAATATTGAAACAGTTGTTTCAGAAGGATTAAATAATATT
AAAGATTTGAAAAAATCTTTCTTACGTTTAATTTATAAAGATTATTTACGAGGATTAAAAAAAGAACTTAAAGCAAAAAA
TTTTTTAAATAATGAACAAGTACAAATTTTTTTAGAAAAAGCACAAGATTTAAAGTTTGATTATTTAAATGAAACTGCTC
AACAAGAATTAATCCAATTATTCAATGAATTAGAATTAAATCATTTATCATTAGATAATAATGATGAAAAATTACAAAAA
GCTTTTAATGATATTAATACTTGAAAATCAAAAACAAGAACAGACATCACGCGCCATTTAATTTTAGATGTTTTAAAATC
AGTTGGTTTAGATGAAACCGTTCTTCGCCGTTATCCATTAGAATTTTCAGGTGGTCAACAACAACGAATTGGGATTTCAA
GAGCTGTAGCACTTCGTCCGAAGTTATTAATTGCTGATGAACCAATTAGTGCTTTAGACGTTTCAATTCAAGCTCAAGTT
GTGAATATTTTTAAAGAATTAAAAACTAAATATGATTTAACAATTTTATTTATTGCTCATGATCTACGAATGGTTGAATA
TATTTCAGATCGAATTGCAGTTATGAATAAGGGTGTGTTGTTAGAAATTGGTCCAACAAAAGAAATTGTTAATAATTTCT
TACATCCATACACACGTTCTCTAATGGAAGCTGTACCTTCAATTGATTCAGAAAAAAAATCACTATTAGGTTATGTATAT
GATGCTAACATGCATGAATATACACCAACAAAACAACCAAAATGAATTCATTTAGGAAACGATCATTATATTCTTGGGAC
AGATGAAGAAATTGCTAATTGAAAAGCAGGAAAATATTAG

Upstream 100 bases:

>100_bases
AACGTGCTGAAAAGTATACACCTCCACAAATAATTTTAGATAAATGAAATAATTTTAAAAAACGACAAGAAAATAATTAA
TAAAATAAGGAGCATCAATT

Downstream 100 bases:

>100_bases
AAAAGGAGCGAAAGCAATATGAAAAAAAGGTTAAAATTATCAGCTAAAATTGCAATTGCTTTTGCATCAGTTGGTGCATT
TGCTGGTGCTGTTGTTGGTT

Product: oligopeptide transport system permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MSDTNQKKAFFNHKKRFCLPDKITIRPVTEGLIERLNANPEKKRLVQVRHLDVTYGHGFKKFRAVKDISFNIYQGEVLGL
VGESGSGKSTTGSALIGLARHSFGDIIIDGIKLPKQGEKVTKELTDFMVNNVQMIFQDPSNSLNPYVNIETVVSEGLNNI
KDLKKSFLRLIYKDYLRGLKKELKAKNFLNNEQVQIFLEKAQDLKFDYLNETAQQELIQLFNELELNHLSLDNNDEKLQK
AFNDINTWKSKTRTDITRHLILDVLKSVGLDETVLRRYPLEFSGGQQQRIGISRAVALRPKLLIADEPISALDVSIQAQV
VNIFKELKTKYDLTILFIAHDLRMVEYISDRIAVMNKGVLLEIGPTKEIVNNFLHPYTRSLMEAVPSIDSEKKSLLGYVY
DANMHEYTPTKQPKWIHLGNDHYILGTDEEIANWKAGKY

Sequences:

>Translated_439_residues
MSDTNQKKAFFNHKKRFCLPDKITIRPVTEGLIERLNANPEKKRLVQVRHLDVTYGHGFKKFRAVKDISFNIYQGEVLGL
VGESGSGKSTTGSALIGLARHSFGDIIIDGIKLPKQGEKVTKELTDFMVNNVQMIFQDPSNSLNPYVNIETVVSEGLNNI
KDLKKSFLRLIYKDYLRGLKKELKAKNFLNNEQVQIFLEKAQDLKFDYLNETAQQELIQLFNELELNHLSLDNNDEKLQK
AFNDINT*KSKTRTDITRHLILDVLKSVGLDETVLRRYPLEFSGGQQQRIGISRAVALRPKLLIADEPISALDVSIQAQV
VNIFKELKTKYDLTILFIAHDLRMVEYISDRIAVMNKGVLLEIGPTKEIVNNFLHPYTRSLMEAVPSIDSEKKSLLGYVY
DANMHEYTPTKQPK*IHLGNDHYILGTDEEIAN*KAGKY
>Mature_438_residues
SDTNQKKAFFNHKKRFCLPDKITIRPVTEGLIERLNANPEKKRLVQVRHLDVTYGHGFKKFRAVKDISFNIYQGEVLGLV
GESGSGKSTTGSALIGLARHSFGDIIIDGIKLPKQGEKVTKELTDFMVNNVQMIFQDPSNSLNPYVNIETVVSEGLNNIK
DLKKSFLRLIYKDYLRGLKKELKAKNFLNNEQVQIFLEKAQDLKFDYLNETAQQELIQLFNELELNHLSLDNNDEKLQKA
FNDINT*KSKTRTDITRHLILDVLKSVGLDETVLRRYPLEFSGGQQQRIGISRAVALRPKLLIADEPISALDVSIQAQVV
NIFKELKTKYDLTILFIAHDLRMVEYISDRIAVMNKGVLLEIGPTKEIVNNFLHPYTRSLMEAVPSIDSEKKSLLGYVYD
ANMHEYTPTKQPK*IHLGNDHYILGTDEEIAN*KAGKY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787500, Length=135, Percent_Identity=54.0740740740741, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI145693107, Length=130, Percent_Identity=50, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789962, Length=136, Percent_Identity=44.8529411764706, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787758, Length=132, Percent_Identity=40.9090909090909, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI48994883, Length=189, Percent_Identity=34.9206349206349, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1789963, Length=140, Percent_Identity=41.4285714285714, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788506, Length=122, Percent_Identity=42.6229508196721, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787759, Length=127, Percent_Identity=37.7952755905512, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1789032, Length=178, Percent_Identity=35.9550561797753, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1789891, Length=100, Percent_Identity=46, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787548, Length=131, Percent_Identity=36.6412213740458, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787547, Length=125, Percent_Identity=35.2, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI48994997, Length=107, Percent_Identity=38.3177570093458, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787370, Length=109, Percent_Identity=42.2018348623853, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788761, Length=145, Percent_Identity=28.2758620689655, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789890, Length=122, Percent_Identity=36.8852459016393, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786398, Length=127, Percent_Identity=37.007874015748, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=219, Percent_Identity=28.310502283105, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788225, Length=123, Percent_Identity=35.7723577235772, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787029, Length=124, Percent_Identity=34.6774193548387, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787089, Length=105, Percent_Identity=38.0952380952381, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788644, Length=128, Percent_Identity=30.46875, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081791, Length=118, Percent_Identity=37.2881355932203, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787712, Length=122, Percent_Identity=33.6065573770492, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789672, Length=112, Percent_Identity=32.1428571428571, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790162, Length=120, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786872, Length=109, Percent_Identity=32.1100917431193, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082267, Length=96, Percent_Identity=35.4166666666667, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786563, Length=95, Percent_Identity=36.8421052631579, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789873, Length=106, Percent_Identity=33.9622641509434, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788450, Length=120, Percent_Identity=28.3333333333333, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1789864, Length=108, Percent_Identity=35.1851851851852, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=81, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081834, Length=91, Percent_Identity=36.2637362637363, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788165, Length=96, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790467, Length=96, Percent_Identity=30.2083333333333, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=93, Percent_Identity=41.9354838709677, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=101, Percent_Identity=36.6336633663366, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 49641; Mature: 49510

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTNQKKAFFNHKKRFCLPDKITIRPVTEGLIERLNANPEKKRLVQVRHLDVTYGHGFK
CCCCCHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCHH
KFRAVKDISFNIYQGEVLGLVGESGSGKSTTGSALIGLARHSFGDIIIDGIKLPKQGEKV
HHHHHHHCEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHH
TKELTDFMVNNVQMIFQDPSNSLNPYVNIETVVSEGLNNIKDLKKSFLRLIYKDYLRGLK
HHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELKAKNFLNNEQVQIFLEKAQDLKFDYLNETAQQELIQLFNELELNHLSLDNNDEKLQK
HHHHHHHCCCCCHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHH
AFNDINTKSKTRTDITRHLILDVLKSVGLDETVLRRYPLEFSGGQQQRIGISRAVALRPK
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCE
LLIADEPISALDVSIQAQVVNIFKELKTKYDLTILFIAHDLRMVEYISDRIAVMNKGVLL
EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEE
EIGPTKEIVNNFLHPYTRSLMEAVPSIDSEKKSLLGYVYDANMHEYTPTKQPKIHLGNDH
EECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCCCCCCCCEEEECCCC
YILGTDEEIANKAGKY
EEECCCHHHHHHCCCC
>Mature Secondary Structure 
SDTNQKKAFFNHKKRFCLPDKITIRPVTEGLIERLNANPEKKRLVQVRHLDVTYGHGFK
CCCCHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCHH
KFRAVKDISFNIYQGEVLGLVGESGSGKSTTGSALIGLARHSFGDIIIDGIKLPKQGEKV
HHHHHHHCEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHH
TKELTDFMVNNVQMIFQDPSNSLNPYVNIETVVSEGLNNIKDLKKSFLRLIYKDYLRGLK
HHHHHHHHHCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELKAKNFLNNEQVQIFLEKAQDLKFDYLNETAQQELIQLFNELELNHLSLDNNDEKLQK
HHHHHHHCCCCCHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHH
AFNDINTKSKTRTDITRHLILDVLKSVGLDETVLRRYPLEFSGGQQQRIGISRAVALRPK
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCE
LLIADEPISALDVSIQAQVVNIFKELKTKYDLTILFIAHDLRMVEYISDRIAVMNKGVLL
EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEE
EIGPTKEIVNNFLHPYTRSLMEAVPSIDSEKKSLLGYVYDANMHEYTPTKQPKIHLGNDH
EECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCCCCCCCCEEEECCCC
YILGTDEEIANKAGKY
EEECCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2352474; 11463916 [H]