| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13358101
GI number: 13358101
Start: 665929
End: 667245
Strand: Reverse
Name: Not Available
Synonym: UU537
Alternate gene names: NA
Gene position: 667245-665929 (Counterclockwise)
Preceding gene: 13358102
Following gene: 13358100
Centisome position: 88.76
GC content: 27.79
Gene sequence:
>1317_bases ATGAGTGCTAATGCTTATGTGTTTCGACGTTCACCAATTCATCGTTTAAATCCAGCAATTAAATTTATTTCTTTTATTTT ATTAATTGCTATGATTTTTTTACCACTTGGCTTTTTTGCGCAAATGATTATTGGAATTTTTATTTTAATCGTCTTTTTTG TAGCTAAATTACCTAAGCGTACTTTATGAAATGTTTTTAAATCCGTCGTTATGTTGTTCATTATCCTACTACTTATTAAT TGAATGACATATAAAGATCCTATTGCTATTTATAATGTCACAGATCAAGCTAAAGTAATTTTAGGTAATAATAGTTGAAT TAATGGTCCTATTAATAGAAATTTATCATTTAATTTATTTTATAATGATATTTCATCAACTCATCCCCAAAATTTAGTTT CGAATATTTGAGGTGGAGAAATTAAAAATTATATTAGTCCTGAGATTATTAAAAAACTAATTGATAAACCCGATTATAAT GTTGCTAAATTTTTAAATGAAAATAACGTAACTGTTAAAAAATTAGAAAGTACTTTTAATGCGTTAAACCAAGATGTTCG ATTGAATAATTTTTATCCAATTTATGGTAATAGTACCTTAAAATCTGGAAAACTTGAAGTGCCATTAAGTCATTTATCAT ATTATATGTCAACGAATTTATGAAAGATCAATGGTATTAAATATCAAGGTTTAATTTTGTCAGGTGTAGGTGATCAATTA GGTAAGGCTCAAACCGCTTTATTTTATACACGAAGTCCTTTCGCTTTAAGTCCTATTGCTATTCAATTAGCTGTTTATAT ATCAATAAAAATTTTTTTAATGATAACCTTATCATCAATTCTAACAGCTACGACTTCATCTATTGAATTGACAAATGGTT TGGAAGATTTGTTAAGTCCTTTTAAAATTTTACGATTGCCTGTTGCTGAGGCTTCAATGATGATTTCAATTGCATTACGT TTTATTCCGTCATTATTAGATGAATCAAAAAGAATATTAAATGCACAAGCTTCACGTGGTGTTGATTTTAATAATGGCGG ACCTATTCAAAAATTAAAATCATTAATTTCACTAGTTGTACCATTATTTTCAATTGCTTTTAAAAAAGCAGAAGATTTAG CAAATGCTATGGAAGCACGTTCTTATAACCCTCGTTATGCACGAACACGTTATCGTACTTTTCCATTAAACCTAGCAGAT TATGCTTTATTTGGAATTTTGTGTATTCTCGTTGGATTTTTAATATCATTGGCCGTGATTAAATTTTATTTCACTCCATT TGGTGTATTTGAAGCAAGTGCATTGTTTGCTAAGTAA
Upstream 100 bases:
>100_bases TAAAAAAGATCTTAAATATGAAATTCTAAAACAAAAACAACCACGCACAATTGAAGAGTTAGCAGATGCTATCATCGAAT TTAAAAAAGGAGAAAAATAA
Downstream 100 bases:
>100_bases TTTGATGAAATAACTTGTTAAACAGGTTATTTTTTATTTATTGGAATAGGAATTAATAATTATGAATTATAAAATTAGTC TTCGTTATGATGGTAGTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSANAYVFRRSPIHRLNPAIKFISFILLIAMIFLPLGFFAQMIIGIFILIVFFVAKLPKRTLWNVFKSVVMLFIILLLIN WMTYKDPIAIYNVTDQAKVILGNNSWINGPINRNLSFNLFYNDISSTHPQNLVSNIWGGEIKNYISPEIIKKLIDKPDYN VAKFLNENNVTVKKLESTFNALNQDVRLNNFYPIYGNSTLKSGKLEVPLSHLSYYMSTNLWKINGIKYQGLILSGVGDQL GKAQTALFYTRSPFALSPIAIQLAVYISIKIFLMITLSSILTATTSSIELTNGLEDLLSPFKILRLPVAEASMMISIALR FIPSLLDESKRILNAQASRGVDFNNGGPIQKLKSLISLVVPLFSIAFKKAEDLANAMEARSYNPRYARTRYRTFPLNLAD YALFGILCILVGFLISLAVIKFYFTPFGVFEASALFAK
Sequences:
>Translated_438_residues MSANAYVFRRSPIHRLNPAIKFISFILLIAMIFLPLGFFAQMIIGIFILIVFFVAKLPKRTL*NVFKSVVMLFIILLLIN *MTYKDPIAIYNVTDQAKVILGNNS*INGPINRNLSFNLFYNDISSTHPQNLVSNI*GGEIKNYISPEIIKKLIDKPDYN VAKFLNENNVTVKKLESTFNALNQDVRLNNFYPIYGNSTLKSGKLEVPLSHLSYYMSTNL*KINGIKYQGLILSGVGDQL GKAQTALFYTRSPFALSPIAIQLAVYISIKIFLMITLSSILTATTSSIELTNGLEDLLSPFKILRLPVAEASMMISIALR FIPSLLDESKRILNAQASRGVDFNNGGPIQKLKSLISLVVPLFSIAFKKAEDLANAMEARSYNPRYARTRYRTFPLNLAD YALFGILCILVGFLISLAVIKFYFTPFGVFEASALFAK >Mature_437_residues SANAYVFRRSPIHRLNPAIKFISFILLIAMIFLPLGFFAQMIIGIFILIVFFVAKLPKRTL*NVFKSVVMLFIILLLIN* MTYKDPIAIYNVTDQAKVILGNNS*INGPINRNLSFNLFYNDISSTHPQNLVSNI*GGEIKNYISPEIIKKLIDKPDYNV AKFLNENNVTVKKLESTFNALNQDVRLNNFYPIYGNSTLKSGKLEVPLSHLSYYMSTNL*KINGIKYQGLILSGVGDQLG KAQTALFYTRSPFALSPIAIQLAVYISIKIFLMITLSSILTATTSSIELTNGLEDLLSPFKILRLPVAEASMMISIALRF IPSLLDESKRILNAQASRGVDFNNGGPIQKLKSLISLVVPLFSIAFKKAEDLANAMEARSYNPRYARTRYRTFPLNLADY ALFGILCILVGFLISLAVIKFYFTPFGVFEASALFAK
Specific function: Unknown
COG id: COG0619
COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CbiQ family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003339 [H]
Pfam domain/function: PF02361 CbiQ [H]
EC number: NA
Molecular weight: Translated: 48321; Mature: 48190
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANAYVFRRSPIHRLNPAIKFISFILLIAMIFLPLGFFAQMIIGIFILIVFFVAKLPKR CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH TLNVFKSVVMLFIILLLINMTYKDPIAIYNVTDQAKVILGNNSINGPINRNLSFNLFYND HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEECC ISSTHPQNLVSNIGGEIKNYISPEIIKKLIDKPDYNVAKFLNENNVTVKKLESTFNALNQ CCCCCHHHHHHHHCHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCC DVRLNNFYPIYGNSTLKSGKLEVPLSHLSYYMSTNLKINGIKYQGLILSGVGDQLGKAQT CCEECCEEEECCCCCCCCCCEECCHHHHHHHHHCCEEEEEEEEECEEEECCCHHHCCHHH ALFYTRSPFALSPIAIQLAVYISIKIFLMITLSSILTATTSSIELTNGLEDLLSPFKILR EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHHHHHHHHH LPVAEASMMISIALRFIPSLLDESKRILNAQASRGVDFNNGGPIQKLKSLISLVVPLFSI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH AFKKAEDLANAMEARSYNPRYARTRYRTFPLNLADYALFGILCILVGFLISLAVIKFYFT HHHHHHHHHHHHHHCCCCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PFGVFEASALFAK CHHHHHHHHHHCC >Mature Secondary Structure SANAYVFRRSPIHRLNPAIKFISFILLIAMIFLPLGFFAQMIIGIFILIVFFVAKLPKR CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH TLNVFKSVVMLFIILLLINMTYKDPIAIYNVTDQAKVILGNNSINGPINRNLSFNLFYND HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEECC ISSTHPQNLVSNIGGEIKNYISPEIIKKLIDKPDYNVAKFLNENNVTVKKLESTFNALNQ CCCCCHHHHHHHHCHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHCC DVRLNNFYPIYGNSTLKSGKLEVPLSHLSYYMSTNLKINGIKYQGLILSGVGDQLGKAQT CCEECCEEEECCCCCCCCCCEECCHHHHHHHHHCCEEEEEEEEECEEEECCCHHHCCHHH ALFYTRSPFALSPIAIQLAVYISIKIFLMITLSSILTATTSSIELTNGLEDLLSPFKILR EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCHHHHHHHHHHHH LPVAEASMMISIALRFIPSLLDESKRILNAQASRGVDFNNGGPIQKLKSLISLVVPLFSI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH AFKKAEDLANAMEARSYNPRYARTRYRTFPLNLADYALFGILCILVGFLISLAVIKFYFT HHHHHHHHHHHHHHCCCCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC PFGVFEASALFAK CHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8604303; 8948633 [H]