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The map label for this gene is codV

Identifier: 13358093

GI number: 13358093

Start: 657864

End: 658619

Strand: Direct

Name: codV

Synonym: UU529

Alternate gene names: 13358093

Gene position: 657864-658619 (Clockwise)

Preceding gene: 13358082

Following gene: 13358099

Centisome position: 87.51

GC content: 19.44

Gene sequence:

>756_bases
ATGAAAAAATTTATAAATTATTTAAAAAATGTAAAAGGATATAGTGATGGTACAATTGCTATTTATCAAAAATATGTTAA
AGTACTAATTGATAATAATTTAGATTATTTAAAAGCTATTAAAAAATATGAACATAACGCTAATGTTACTAAGCGCGTTG
TTTTAAGTGCTTTTAAAGCATATTTAAAATTTATTAATCATAAAGATGCTATATTGATTGTTATGCCTAAAAAAGAAATT
AAAGTAAAAGAATTTTTGACTTGAGATAATTTTTTAAAAATTATTAATAATATTAATCAAGCTACCTTTTTAGGTTTTCA
GAAATATTTAATTTTAAGAATTTTATTTGAAACAGGCATTCGATCTTGTGAATTATTAAAACTAGAAATTAAAGATATTT
ATGAAAATAAGTTAAAAATTCATGGCAAAGGCAAAAAAGAACGCTTTGTTTATTTATCAAACGATTTACAAAATAATATT
AAAAAATATATTGGTCAAATTAAAACAAAATATTTATTTAATTTTAGTTATAAAAATTTGTATCAAAAAGTTACTAGAAT
TAAAACTAATATTAGGCTAACGCCTCATATTTTACGTCGTAGTTTTGCTAACCATTGCATTAATAATGGTATTAATATTT
ATGATTTATCATTAGTTATGGGTCATAACAATATTAATTCAACAAGTTTATATTTAAATAAGGAAAGTAAATTAGTAGAA
TTAGATCATCTTTTTGATAATAAAAAAGTTAATTAA

Upstream 100 bases:

>100_bases
ATAAAGCAGATAAAACTAAGGTTTTCTCTATTTTTTTGTAATTTAAATTAATATAATTTTAAAAATCCTATTGTTTTTTA
TATATTTATAATTTTTACAT

Downstream 100 bases:

>100_bases
TTTTATAAATATATAAAATAAAAAATCTACTTCAGTTTTGCACTAAAGTAGATAATATAATTCAATTCTAAATACCAACA
AAAAACTAAATTAAAAATAA

Product: integrase-recombinase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKKFINYLKNVKGYSDGTIAIYQKYVKVLIDNNLDYLKAIKKYEHNANVTKRVVLSAFKAYLKFINHKDAILIVMPKKEI
KVKEFLTWDNFLKIINNINQATFLGFQKYLILRILFETGIRSCELLKLEIKDIYENKLKIHGKGKKERFVYLSNDLQNNI
KKYIGQIKTKYLFNFSYKNLYQKVTRIKTNIRLTPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESKLVE
LDHLFDNKKVN

Sequences:

>Translated_251_residues
MKKFINYLKNVKGYSDGTIAIYQKYVKVLIDNNLDYLKAIKKYEHNANVTKRVVLSAFKAYLKFINHKDAILIVMPKKEI
KVKEFLT*DNFLKIINNINQATFLGFQKYLILRILFETGIRSCELLKLEIKDIYENKLKIHGKGKKERFVYLSNDLQNNI
KKYIGQIKTKYLFNFSYKNLYQKVTRIKTNIRLTPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESKLVE
LDHLFDNKKVN
>Mature_251_residues
MKKFINYLKNVKGYSDGTIAIYQKYVKVLIDNNLDYLKAIKKYEHNANVTKRVVLSAFKAYLKFINHKDAILIVMPKKEI
KVKEFLT*DNFLKIINNINQATFLGFQKYLILRILFETGIRSCELLKLEIKDIYENKLKIHGKGKKERFVYLSNDLQNNI
KKYIGQIKTKYLFNFSYKNLYQKVTRIKTNIRLTPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESKLVE
LDHLFDNKKVN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=142, Percent_Identity=28.8732394366197, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 29492; Mature: 29492

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFINYLKNVKGYSDGTIAIYQKYVKVLIDNNLDYLKAIKKYEHNANVTKRVVLSAFKA
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLKFINHKDAILIVMPKKEIKVKEFLTDNFLKIINNINQATFLGFQKYLILRILFETGIR
HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
SCELLKLEIKDIYENKLKIHGKGKKERFVYLSNDLQNNIKKYIGQIKTKYLFNFSYKNLY
CEEEEEHHHHHHHCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEECHHHHHH
QKVTRIKTNIRLTPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESKLVEL
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEECCCCEEEH
DHLFDNKKVN
HHHHCCCCCC
>Mature Secondary Structure
MKKFINYLKNVKGYSDGTIAIYQKYVKVLIDNNLDYLKAIKKYEHNANVTKRVVLSAFKA
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLKFINHKDAILIVMPKKEIKVKEFLTDNFLKIINNINQATFLGFQKYLILRILFETGIR
HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
SCELLKLEIKDIYENKLKIHGKGKKERFVYLSNDLQNNIKKYIGQIKTKYLFNFSYKNLY
CEEEEEHHHHHHHCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEECHHHHHH
QKVTRIKTNIRLTPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESKLVEL
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEECCCCEEEH
DHLFDNKKVN
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA