| Definition | Ureaplasma parvum serovar 3 str. ATCC 700970, complete genome. |
|---|---|
| Accession | NC_002162 |
| Length | 751,719 |
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Identifier: 13358036
GI number: 13358036
Start: 537638
End: 539965
Strand: Direct
Name: Not Available
Synonym: UU473
Alternate gene names: NA
Gene position: 537638-539965 (Clockwise)
Preceding gene: 13358035
Following gene: 13358037
Centisome position: 71.52
GC content: 25.99
Gene sequence:
>2328_bases ATGAAATCAAATAATAAAAATTACAAATTTTTGAACATAAAAAAACGGAAATATCGCATTTTTTTTATGTTGTGTTCTTT AAATTTAATATGAGCAGGCGTTATTATAGCTATTGTTCTGCGTTTAAAAAATATTGATAAACGCTTTAGTGAAAATGACC ATAAAATTGCTCGTCCAACTTGAGAGTATGATAATGATGGAAATTTAGAGATTCACACTCAATTAGCAAATGATTTAAAT GATGATTTAAAACAAAAAGCTTTAAATAATGCAAATGTCAAAGGAATTGTTGTTGACCAAAATGGTGTAGAACATGAGAT AGATGTAAGTATTGATGCTAATGGTAAGGTTATTATTCCAACAAAAGATTTAGTAAATAATGACCCAACTAAACCTAATA TATACACACTTAAAAAAGTCGTTTTAAAACAACATAATCAACCAAATATTGATCTAATTAGTGAAGAGCAATTAAGTGGT GATAATCATATTTCATTTAAAAAACCAACAGTGGTTGCTCAAATTAATGATAACAATGATTATATAATGCATTTTACGAA TCCTAATTTAGTTAACAAGAAAATTAAATTAACATTTAAAGTTGATGATCAAGATGATCATACAAAAACCATTGAAGCTA TCATTGGATTAGATGGAAAGGCTATTTTTAAAACAAGTGATGATGCAATTTTTGCACCAGATCATAAATATACACTAACA AAAATTGAAGCTAATAACAAAAAAGTTGCTAACATTGATGAAATTCCATTAAAAAATAGAATCGTTGATAAAAATCCAAT TAAAAGAATTAACTTAACACAACTAAAAGTTGCTAAAGATTTAATTCTTTGAAATAATACAAACCAAAACCAATTCATAA CTGCTACTTTTAAAAATATAAATAACGATTTTGATGATTATATTGTTAAATTAATTTATGAATACAATTATCGTGGAGAA ATGAAAGAAATTGCATCACAACCTTTCAAATTAGAAAAAAATAAAACAACATACAACAATATCCTTTTGCCAATTAGTAT TCCAAATCGCTTATATCATTTTAAAAAAGTAGTAATTCAAAAATTAAATCAACCAAATAAATCTATTGATTTAGATCATG ATCCAAATTTAAAATCTTTTTTTATTGTTGGTCCTGGTAAAACAGATTTTGCATGAAAAAAACCAAATGATGATCAAATT ACATATGATGGTTTAAAGAGATTAAATATTGAAATTACTTCTCAAGATTATGCATTACAAAATGGTAAAAAAGTTATGGT TTGGTTTAAATCAGATGCCGAACCAAATAATGATTCACTTAAATTTATAGGCGAATTATCTCAAACTAACGCCAATGGAA CAGCTGCTGTCATTAATAATTTAAATAATTTATACGGTATGAAAGAACAAACAGAGTATTACATCTATAAAATTCAGTTC ATAGATGAATTAGAATATTCAAAATTACCACCAAACCGTAATAACATTGTTTATGAATATAATAAAAATATTGCACGTAA TTATGCATTCCGAACTAAAACTGCCCCTTTAATTTTAGAAAAAATAGAAAAAGATGATAATGGTAGCATTGGAGGACAAA ATTTTTATTTTTACCTAAATAAAGCTAGTGATGATCCTAGTACAATCAAGCAAGTTACTATATATTGTCGTGATAATAAT AATGAATTATATACTTCTGATGATCAAGAAATAGATTCTGTTGATCTTGTATATCATTCTTGAATTCATGATTTAAAATG AAATCGTGAATATGTTTTTGATCATGCTGAAATACAAACAACATATCCTGATGATCCTGAATATGGTGGTGAAACAAATG ATTTAGAAATTAAAAGAGGATTAACTTTCAAGTTTTATACACCACCAAGTAAAACAGAAATACAGTGAAAACATCCTATA AAAATAACTAATAATGGGGCAATTTTAGATATTCAATTACAATCAAAAGATCGGGCATTTGAAGATAAGCAAAAATATCG AGTGACATTAGTTGAAGCTGAAAATCAAAACAATGCTGTTGTTGGTGACTTTTTACTTGCTGGCACTTCTATTAATAAAA ATGATAGCCCAATTGGTGATAATAATGATAAGAACAAAGATATAGCAACTTTGAGCTGTAATTTTGAAAACAAATTAAAA AAAGGGACTAAATACTTATTAAAAGAAGTTCGATTTATTGCTAATCCAAATGAAGAAATTAGTGCTAAACCTACTAGAGC TGCTAGACCATTTAATAATGATAATATTATTTATAGTTTGAATCTACGAATAAATGATCCCTATGACTTTACAACTTTAA AAAATTAG
Upstream 100 bases:
>100_bases ATTAAAACATTATTGTTTTTTTTTTTTTTTTGAAAAAATAATGAGTAAATAAATGTTTTGTTTTTATCTGTTTATTTTAT AAAAATGTGGGAAAAATTAT
Downstream 100 bases:
>100_bases TTTAATCCTTAAATTTTTAGTTATATATATATATATATATATATGAAAGTAAATAAAATAATTATGAAAAAAAGAGTTAA TAAAATATATAAACACAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 775; Mature: 775
Protein sequence:
>775_residues MKSNNKNYKFLNIKKRKYRIFFMLCSLNLIWAGVIIAIVLRLKNIDKRFSENDHKIARPTWEYDNDGNLEIHTQLANDLN DDLKQKALNNANVKGIVVDQNGVEHEIDVSIDANGKVIIPTKDLVNNDPTKPNIYTLKKVVLKQHNQPNIDLISEEQLSG DNHISFKKPTVVAQINDNNDYIMHFTNPNLVNKKIKLTFKVDDQDDHTKTIEAIIGLDGKAIFKTSDDAIFAPDHKYTLT KIEANNKKVANIDEIPLKNRIVDKNPIKRINLTQLKVAKDLILWNNTNQNQFITATFKNINNDFDDYIVKLIYEYNYRGE MKEIASQPFKLEKNKTTYNNILLPISIPNRLYHFKKVVIQKLNQPNKSIDLDHDPNLKSFFIVGPGKTDFAWKKPNDDQI TYDGLKRLNIEITSQDYALQNGKKVMVWFKSDAEPNNDSLKFIGELSQTNANGTAAVINNLNNLYGMKEQTEYYIYKIQF IDELEYSKLPPNRNNIVYEYNKNIARNYAFRTKTAPLILEKIEKDDNGSIGGQNFYFYLNKASDDPSTIKQVTIYCRDNN NELYTSDDQEIDSVDLVYHSWIHDLKWNREYVFDHAEIQTTYPDDPEYGGETNDLEIKRGLTFKFYTPPSKTEIQWKHPI KITNNGAILDIQLQSKDRAFEDKQKYRVTLVEAENQNNAVVGDFLLAGTSINKNDSPIGDNNDKNKDIATLSCNFENKLK KGTKYLLKEVRFIANPNEEISAKPTRAARPFNNDNIIYSLNLRINDPYDFTTLKN
Sequences:
>Translated_775_residues MKSNNKNYKFLNIKKRKYRIFFMLCSLNLI*AGVIIAIVLRLKNIDKRFSENDHKIARPT*EYDNDGNLEIHTQLANDLN DDLKQKALNNANVKGIVVDQNGVEHEIDVSIDANGKVIIPTKDLVNNDPTKPNIYTLKKVVLKQHNQPNIDLISEEQLSG DNHISFKKPTVVAQINDNNDYIMHFTNPNLVNKKIKLTFKVDDQDDHTKTIEAIIGLDGKAIFKTSDDAIFAPDHKYTLT KIEANNKKVANIDEIPLKNRIVDKNPIKRINLTQLKVAKDLIL*NNTNQNQFITATFKNINNDFDDYIVKLIYEYNYRGE MKEIASQPFKLEKNKTTYNNILLPISIPNRLYHFKKVVIQKLNQPNKSIDLDHDPNLKSFFIVGPGKTDFA*KKPNDDQI TYDGLKRLNIEITSQDYALQNGKKVMVWFKSDAEPNNDSLKFIGELSQTNANGTAAVINNLNNLYGMKEQTEYYIYKIQF IDELEYSKLPPNRNNIVYEYNKNIARNYAFRTKTAPLILEKIEKDDNGSIGGQNFYFYLNKASDDPSTIKQVTIYCRDNN NELYTSDDQEIDSVDLVYHS*IHDLK*NREYVFDHAEIQTTYPDDPEYGGETNDLEIKRGLTFKFYTPPSKTEIQ*KHPI KITNNGAILDIQLQSKDRAFEDKQKYRVTLVEAENQNNAVVGDFLLAGTSINKNDSPIGDNNDKNKDIATLSCNFENKLK KGTKYLLKEVRFIANPNEEISAKPTRAARPFNNDNIIYSLNLRINDPYDFTTLKN >Mature_775_residues MKSNNKNYKFLNIKKRKYRIFFMLCSLNLI*AGVIIAIVLRLKNIDKRFSENDHKIARPT*EYDNDGNLEIHTQLANDLN DDLKQKALNNANVKGIVVDQNGVEHEIDVSIDANGKVIIPTKDLVNNDPTKPNIYTLKKVVLKQHNQPNIDLISEEQLSG DNHISFKKPTVVAQINDNNDYIMHFTNPNLVNKKIKLTFKVDDQDDHTKTIEAIIGLDGKAIFKTSDDAIFAPDHKYTLT KIEANNKKVANIDEIPLKNRIVDKNPIKRINLTQLKVAKDLIL*NNTNQNQFITATFKNINNDFDDYIVKLIYEYNYRGE MKEIASQPFKLEKNKTTYNNILLPISIPNRLYHFKKVVIQKLNQPNKSIDLDHDPNLKSFFIVGPGKTDFA*KKPNDDQI TYDGLKRLNIEITSQDYALQNGKKVMVWFKSDAEPNNDSLKFIGELSQTNANGTAAVINNLNNLYGMKEQTEYYIYKIQF IDELEYSKLPPNRNNIVYEYNKNIARNYAFRTKTAPLILEKIEKDDNGSIGGQNFYFYLNKASDDPSTIKQVTIYCRDNN NELYTSDDQEIDSVDLVYHS*IHDLK*NREYVFDHAEIQTTYPDDPEYGGETNDLEIKRGLTFKFYTPPSKTEIQ*KHPI KITNNGAILDIQLQSKDRAFEDKQKYRVTLVEAENQNNAVVGDFLLAGTSINKNDSPIGDNNDKNKDIATLSCNFENKLK KGTKYLLKEVRFIANPNEEISAKPTRAARPFNNDNIIYSLNLRINDPYDFTTLKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88160; Mature: 88160
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSNNKNYKFLNIKKRKYRIFFMLCSLNLIAGVIIAIVLRLKNIDKRFSENDHKIARPTE CCCCCCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC YDNDGNLEIHTQLANDLNDDLKQKALNNANVKGIVVDQNGVEHEIDVSIDANGKVIIPTK CCCCCCEEEEEEHHHCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECH DLVNNDPTKPNIYTLKKVVLKQHNQPNIDLISEEQLSGDNHISFKKPTVVAQINDNNDYI HHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHCCCCCEEEEECCEEEEEEECCCCEE MHFTNPNLVNKKIKLTFKVDDQDDHTKTIEAIIGLDGKAIFKTSDDAIFAPDHKYTLTKI EEECCCCEECEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEECCCCCEEEEEE EANNKKVANIDEIPLKNRIVDKNPIKRINLTQLKVAKDLILNNTNQNQFITATFKNINND ECCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC FDDYIVKLIYEYNYRGEMKEIASQPFKLEKNKTTYNNILLPISIPNRLYHFKKVVIQKLN HHHHHHEEHEECCCCCCHHHHHCCCEEEECCCCEECCEEEEEECCHHHHHHHHHHHHHHC QPNKSIDLDHDPNLKSFFIVGPGKTDFAKKPNDDQITYDGLKRLNIEITSQDYALQNGKK CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCEEEEEEEEECCCEEECCCCE VMVWFKSDAEPNNDSLKFIGELSQTNANGTAAVINNLNNLYGMKEQTEYYIYKIQFIDEL EEEEEECCCCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC EYSKLPPNRNNIVYEYNKNIARNYAFRTKTAPLILEKIEKDDNGSIGGQNFYFYLNKASD CCCCCCCCCCCEEEEECCCCHHHEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCC DPSTIKQVTIYCRDNNNELYTSDDQEIDSVDLVYHSIHDLKNREYVFDHAEIQTTYPDDP CCCCEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECEEEEEECCCCC EYGGETNDLEIKRGLTFKFYTPPSKTEIQKHPIKITNNGAILDIQLQSKDRAFEDKQKYR CCCCCCCCEEEECCCEEEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCEE VTLVEAENQNNAVVGDFLLAGTSINKNDSPIGDNNDKNKDIATLSCNFENKLKKGTKYLL EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH KEVRFIANPNEEISAKPTRAARPFNNDNIIYSLNLRINDPYDFTTLKN HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEECCC >Mature Secondary Structure MKSNNKNYKFLNIKKRKYRIFFMLCSLNLIAGVIIAIVLRLKNIDKRFSENDHKIARPTE CCCCCCCEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC YDNDGNLEIHTQLANDLNDDLKQKALNNANVKGIVVDQNGVEHEIDVSIDANGKVIIPTK CCCCCCEEEEEEHHHCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECH DLVNNDPTKPNIYTLKKVVLKQHNQPNIDLISEEQLSGDNHISFKKPTVVAQINDNNDYI HHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHCCCCCEEEEECCEEEEEEECCCCEE MHFTNPNLVNKKIKLTFKVDDQDDHTKTIEAIIGLDGKAIFKTSDDAIFAPDHKYTLTKI EEECCCCEECEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCEECCCCCEEEEEE EANNKKVANIDEIPLKNRIVDKNPIKRINLTQLKVAKDLILNNTNQNQFITATFKNINND ECCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC FDDYIVKLIYEYNYRGEMKEIASQPFKLEKNKTTYNNILLPISIPNRLYHFKKVVIQKLN HHHHHHEEHEECCCCCCHHHHHCCCEEEECCCCEECCEEEEEECCHHHHHHHHHHHHHHC QPNKSIDLDHDPNLKSFFIVGPGKTDFAKKPNDDQITYDGLKRLNIEITSQDYALQNGKK CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCEEEEEEEEECCCEEECCCCE VMVWFKSDAEPNNDSLKFIGELSQTNANGTAAVINNLNNLYGMKEQTEYYIYKIQFIDEL EEEEEECCCCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC EYSKLPPNRNNIVYEYNKNIARNYAFRTKTAPLILEKIEKDDNGSIGGQNFYFYLNKASD CCCCCCCCCCCEEEEECCCCHHHEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCC DPSTIKQVTIYCRDNNNELYTSDDQEIDSVDLVYHSIHDLKNREYVFDHAEIQTTYPDDP CCCCEEEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECEEEEEECCCCC EYGGETNDLEIKRGLTFKFYTPPSKTEIQKHPIKITNNGAILDIQLQSKDRAFEDKQKYR CCCCCCCCEEEECCCEEEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCEE VTLVEAENQNNAVVGDFLLAGTSINKNDSPIGDNNDKNKDIATLSCNFENKLKKGTKYLL EEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH KEVRFIANPNEEISAKPTRAARPFNNDNIIYSLNLRINDPYDFTTLKN HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA