Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126699223
Identifier: 126699223
GI number: 126699223
Start: 1874544
End: 1875308
Strand: Direct
Name: 126699223
Synonym: CD1619
Alternate gene names: NA
Gene position: 1874544-1875308 (Clockwise)
Preceding gene: 126699222
Following gene: 126699224
Centisome position: 43.69
GC content: 26.54
Gene sequence:
>765_bases ATGTTAGGTAAATTATTAAAATATGAGTTAAAAGCAAGTGGAAGAATATTTATACCGTTATATATAGCCATATTGATAGT AGCTGTATTTAATGGAATATTTATGAATACAAATATACTTCAGGTACAGGGAATAGGAATACTAGTATTAACAAGTCTTT TTATGGCATTAGGAGTTTTAACTATTGTAGTTACAATTCAAAGATTTAGAAAAAATCTTTTGGGGGATGAAGGTTATTTA ATGTTTACTCTTCCTGTTAGCACTAGTTCACTTATATTATCTAAATGTATAACAGCACTTATATACGCTGTACTTAGTTT TATAGTTGCAGTATTCACTTTTGGAGTTCTTATGCTTTTTGGTACTTCTGGAATTTTACTACCTGAAATTTTAGATTTGT TTAACACTAGTTTTAAATGGATTTCTGAAAACTTTTTAGATATTTTATTATTAGTAGTAGTAATGTTTATTTCGTATTCA TCATTTATTTTGTTATTATATACATCAATCTCAATGGGACAATTACCAAAATTCAATAAACATAGAAACATAGTGGCATT TGCTTCTTTTATAGCTATAAATATAGTAATATCAATTGTTGGAGATGCAGTTGGAAGCATCTTACCAAATGAAGATACAA ATATGGTATATCATCTTTATCAGAGTCCTAGTTTTATGCTTGCAATACTTGGTAGTCTTGTAGTTGCAATAGCGTTATTT TTCGCTACAAAATTTATATTAGATAAAAAATTAAATTTAGAATAA
Upstream 100 bases:
>100_bases TATTCATATCAAAAGGAGAAATAGTGTTACAAGGAGACGTTGAAGCAATAAGAGAAGAAAAAGGAAAATCTATAGATGCA TTATTTAGGGAGGAATTTAA
Downstream 100 bases:
>100_bases ATGTTTTTATATGGAGCTATCTTTTGAGTAATGTTAAAAGATGGCTCTTATTATTTATGTAGTTAATTCATGTATATAAT ATGAATAGTGTTTTATTTCT
Product: ABC transporter permease
Products: NA
Alternate protein names: ABC Transporter Permease; Permease; ABC Transporter Peremase Protein; ABC Transporter Membrane-Spanning Protein
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MLGKLLKYELKASGRIFIPLYIAILIVAVFNGIFMNTNILQVQGIGILVLTSLFMALGVLTIVVTIQRFRKNLLGDEGYL MFTLPVSTSSLILSKCITALIYAVLSFIVAVFTFGVLMLFGTSGILLPEILDLFNTSFKWISENFLDILLLVVVMFISYS SFILLLYTSISMGQLPKFNKHRNIVAFASFIAINIVISIVGDAVGSILPNEDTNMVYHLYQSPSFMLAILGSLVVAIALF FATKFILDKKLNLE
Sequences:
>Translated_254_residues MLGKLLKYELKASGRIFIPLYIAILIVAVFNGIFMNTNILQVQGIGILVLTSLFMALGVLTIVVTIQRFRKNLLGDEGYL MFTLPVSTSSLILSKCITALIYAVLSFIVAVFTFGVLMLFGTSGILLPEILDLFNTSFKWISENFLDILLLVVVMFISYS SFILLLYTSISMGQLPKFNKHRNIVAFASFIAINIVISIVGDAVGSILPNEDTNMVYHLYQSPSFMLAILGSLVVAIALF FATKFILDKKLNLE >Mature_254_residues MLGKLLKYELKASGRIFIPLYIAILIVAVFNGIFMNTNILQVQGIGILVLTSLFMALGVLTIVVTIQRFRKNLLGDEGYL MFTLPVSTSSLILSKCITALIYAVLSFIVAVFTFGVLMLFGTSGILLPEILDLFNTSFKWISENFLDILLLVVVMFISYS SFILLLYTSISMGQLPKFNKHRNIVAFASFIAINIVISIVGDAVGSILPNEDTNMVYHLYQSPSFMLAILGSLVVAIALF FATKFILDKKLNLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28132; Mature: 28132
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGKLLKYELKASGRIFIPLYIAILIVAVFNGIFMNTNILQVQGIGILVLTSLFMALGVL CCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH TIVVTIQRFRKNLLGDEGYLMFTLPVSTSSLILSKCITALIYAVLSFIVAVFTFGVLMLF HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTSGILLPEILDLFNTSFKWISENFLDILLLVVVMFISYSSFILLLYTSISMGQLPKFNK CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC HRNIVAFASFIAINIVISIVGDAVGSILPNEDTNMVYHLYQSPSFMLAILGSLVVAIALF CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH FATKFILDKKLNLE HHHHHHHHHCCCCC >Mature Secondary Structure MLGKLLKYELKASGRIFIPLYIAILIVAVFNGIFMNTNILQVQGIGILVLTSLFMALGVL CCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHH TIVVTIQRFRKNLLGDEGYLMFTLPVSTSSLILSKCITALIYAVLSFIVAVFTFGVLMLF HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTSGILLPEILDLFNTSFKWISENFLDILLLVVVMFISYSSFILLLYTSISMGQLPKFNK CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC HRNIVAFASFIAINIVISIVGDAVGSILPNEDTNMVYHLYQSPSFMLAILGSLVVAIALF CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH FATKFILDKKLNLE HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA