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The map label for this gene is ydaK [H]

Identifier: 126698612

GI number: 126698612

Start: 1199710

End: 1200558

Strand: Direct

Name: ydaK [H]

Synonym: CD1028

Alternate gene names: 126698612

Gene position: 1199710-1200558 (Clockwise)

Preceding gene: 126698611

Following gene: 126698613

Centisome position: 27.96

GC content: 23.09

Gene sequence:

>849_bases
ATGAATAGGATAAATAAAAAAATAGATTTATTAATATTGGCTTTGCTCGTTTTTATATTTTTAATTGTTGGAATAGTAAT
ACTATCGATTAGGACAGAAAATAAATTGAATGTGTTCATAATGTTAGCAATAATTTTTTTTATAATAATGTTAACTTATT
TATCAAATTCAGTAGTGGGGTTGATAACAAGTTCAATAATTATATTTATGTATACATCCTATATTTTATATAACAATATT
ACTCACAATATGGATGTTGAATTTATATCATATATGTGGATAATAGCAACACCAGTATCTTCAATTATAATGGGTAATCT
GAACAAAAGCATAAATGAATTGCAAAATACAAATAAAAAACTATCTGAACAGTATAAGGAATTAGTGACTATTGATAGTG
AAACTGGACTTAGAAATTTAAAGATTTTTTATAATGATGTAAATATGGAGATAAGTAAATCTATTAGACATAATACTGAT
TTTTCTCTTATGATAGTAAAATTACCATACTACGGAAACCTACAGACTATATTTGGTGAAAACAAAACTAATAAAATAGT
AAAATATATTGGTTCAAATATTATAGAATGTACAAGAAATGAAGATATAATTTATAGTTTACAAAAAGATATGATAGGGA
TACTAATGCCAAATACATCTTTGGAAGGTTCAAAAGTTGTTAAAGACAGAATAAAGAAAAGGATAAAAGAATTAAATTTA
GATTTAAACAATAGGGGAAAATATGTAAATATAGATGTCAAAATTGCATTTTTACAATATAAGAGTAGTTTTGGAGATAG
TATAAATTTTAAGAATATAGTTGAAGAGGAACTTCAATATGATGTTTAA

Upstream 100 bases:

>100_bases
GTTTATTAATAAATGAAAACTTATTTGTATAATGACTTTAATAATAATTAGAAAAAATGGGCAACTTAATAGAATAATTG
GAGGTGTAAATTTATAAAAA

Downstream 100 bases:

>100_bases
AATATTTAATAAAAGTCTATTAAAATTAGTAGTTGTATTATCAATAGTACTGACAATATCAAATTTTAGCTTATCTTCAT
ATGCATCAGAAATTACTTCC

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNRINKKIDLLILALLVFIFLIVGIVILSIRTENKLNVFIMLAIIFFIIMLTYLSNSVVGLITSSIIIFMYTSYILYNNI
THNMDVEFISYMWIIATPVSSIIMGNLNKSINELQNTNKKLSEQYKELVTIDSETGLRNLKIFYNDVNMEISKSIRHNTD
FSLMIVKLPYYGNLQTIFGENKTNKIVKYIGSNIIECTRNEDIIYSLQKDMIGILMPNTSLEGSKVVKDRIKKRIKELNL
DLNNRGKYVNIDVKIAFLQYKSSFGDSINFKNIVEEELQYDV

Sequences:

>Translated_282_residues
MNRINKKIDLLILALLVFIFLIVGIVILSIRTENKLNVFIMLAIIFFIIMLTYLSNSVVGLITSSIIIFMYTSYILYNNI
THNMDVEFISYMWIIATPVSSIIMGNLNKSINELQNTNKKLSEQYKELVTIDSETGLRNLKIFYNDVNMEISKSIRHNTD
FSLMIVKLPYYGNLQTIFGENKTNKIVKYIGSNIIECTRNEDIIYSLQKDMIGILMPNTSLEGSKVVKDRIKKRIKELNL
DLNNRGKYVNIDVKIAFLQYKSSFGDSINFKNIVEEELQYDV
>Mature_282_residues
MNRINKKIDLLILALLVFIFLIVGIVILSIRTENKLNVFIMLAIIFFIIMLTYLSNSVVGLITSSIIIFMYTSYILYNNI
THNMDVEFISYMWIIATPVSSIIMGNLNKSINELQNTNKKLSEQYKELVTIDSETGLRNLKIFYNDVNMEISKSIRHNTD
FSLMIVKLPYYGNLQTIFGENKTNKIVKYIGSNIIECTRNEDIIYSLQKDMIGILMPNTSLEGSKVVKDRIKKRIKELNL
DLNNRGKYVNIDVKIAFLQYKSSFGDSINFKNIVEEELQYDV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 32622; Mature: 32622

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRINKKIDLLILALLVFIFLIVGIVILSIRTENKLNVFIMLAIIFFIIMLTYLSNSVVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
LITSSIIIFMYTSYILYNNITHNMDVEFISYMWIIATPVSSIIMGNLNKSINELQNTNKK
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LSEQYKELVTIDSETGLRNLKIFYNDVNMEISKSIRHNTDFSLMIVKLPYYGNLQTIFGE
HHHHHHHHEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCEEEEEEEECCCCCCCEEECC
NKTNKIVKYIGSNIIECTRNEDIIYSLQKDMIGILMPNTSLEGSKVVKDRIKKRIKELNL
CCHHHHHHHHCCHHEEECCCCCCEEEHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHCC
DLNNRGKYVNIDVKIAFLQYKSSFGDSINFKNIVEEELQYDV
CCCCCCCEEEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNRINKKIDLLILALLVFIFLIVGIVILSIRTENKLNVFIMLAIIFFIIMLTYLSNSVVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
LITSSIIIFMYTSYILYNNITHNMDVEFISYMWIIATPVSSIIMGNLNKSINELQNTNKK
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LSEQYKELVTIDSETGLRNLKIFYNDVNMEISKSIRHNTDFSLMIVKLPYYGNLQTIFGE
HHHHHHHHEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCEEEEEEEECCCCCCCEEECC
NKTNKIVKYIGSNIIECTRNEDIIYSLQKDMIGILMPNTSLEGSKVVKDRIKKRIKELNL
CCHHHHHHHHCCHHEEECCCCCCEEEHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHCC
DLNNRGKYVNIDVKIAFLQYKSSFGDSINFKNIVEEELQYDV
CCCCCCCEEEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]