Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 126698610

GI number: 126698610

Start: 1197700

End: 1198428

Strand: Direct

Name: potC [H]

Synonym: CD1026

Alternate gene names: 126698610

Gene position: 1197700-1198428 (Clockwise)

Preceding gene: 126698609

Following gene: 126698611

Centisome position: 27.92

GC content: 30.04

Gene sequence:

>729_bases
TTGTATGCACCCATATTTGCTTTGGTACTATTTTCTTTCAATGATTCAAAATCAATGGCAAGATGGAATGGATTTACATG
GAAGTGGTATGGTCAATTACTTCAAAATGAGAGTATAATGAGTGCTTTATATTATACTATTGTAATAGCTATATTAGCGT
CTGTAATATCTACAATAGTAGGAACTATAAGTGCTATAGGAATACATAAGATGAGAGGTAAGAGTAAGAAATTAATACTA
AATGTAAACTATCTTCCTATTTTAAATACAGAGATAGTTACAGCAGTAGCTCTTATGAGTCTGTTTGTATTTGTAAAAAT
GGAATTTGGATTTACAACAATGCTATTGGCACATATAATGTTTTGTTTGCCATACGTTATACTTTCAGTTTTGCCAAAAA
TGAAGCAATTACCTGATAATATAGAAGATGCAGCTATGGACTTGGGAGCAACACCTATATACGCTCTTAGAAAAGTAATT
TTACCACAAATAAAACCAGGTATAGTTTCTGGATTTTTAATTGCATTTACTATGTCAATAGATGACTTTATAATAAGTTT
CTTTAATGCTGGAAATGGTGTAAGCAATCTTTCTATAGAAATCTATGGAATGGCTAGAAGAGGTATAAAACCTGAAATAA
ATGCATTATCAACAATAATGTTTGCAGTGGTTCTAGGTTTACTTTTACTAGCTAATAAAAAAGAATCTATAGTAAGGGGG
ATTAAATAA

Upstream 100 bases:

>100_bases
CAAAATTTGGAGATGAATCTGACAAAGAAGGCGGTGGGTTACTATTTTAAAATTAAAGAAAATAACTTCTAATATATATT
TAGCATTAGTATTCTTATTT

Downstream 100 bases:

>100_bases
TGATTAAGTTTAAAAAAGCAATATCCCTTATAGCTGTAGGTATGATGATAGTTACTTTATTTACAGGATGTAATAAAGCA
ACTGATTCTACAAAAGTTTT

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MYAPIFALVLFSFNDSKSMARWNGFTWKWYGQLLQNESIMSALYYTIVIAILASVISTIVGTISAIGIHKMRGKSKKLIL
NVNYLPILNTEIVTAVALMSLFVFVKMEFGFTTMLLAHIMFCLPYVILSVLPKMKQLPDNIEDAAMDLGATPIYALRKVI
LPQIKPGIVSGFLIAFTMSIDDFIISFFNAGNGVSNLSIEIYGMARRGIKPEINALSTIMFAVVLGLLLLANKKESIVRG
IK

Sequences:

>Translated_242_residues
MYAPIFALVLFSFNDSKSMARWNGFTWKWYGQLLQNESIMSALYYTIVIAILASVISTIVGTISAIGIHKMRGKSKKLIL
NVNYLPILNTEIVTAVALMSLFVFVKMEFGFTTMLLAHIMFCLPYVILSVLPKMKQLPDNIEDAAMDLGATPIYALRKVI
LPQIKPGIVSGFLIAFTMSIDDFIISFFNAGNGVSNLSIEIYGMARRGIKPEINALSTIMFAVVLGLLLLANKKESIVRG
IK
>Mature_242_residues
MYAPIFALVLFSFNDSKSMARWNGFTWKWYGQLLQNESIMSALYYTIVIAILASVISTIVGTISAIGIHKMRGKSKKLIL
NVNYLPILNTEIVTAVALMSLFVFVKMEFGFTTMLLAHIMFCLPYVILSVLPKMKQLPDNIEDAAMDLGATPIYALRKVI
LPQIKPGIVSGFLIAFTMSIDDFIISFFNAGNGVSNLSIEIYGMARRGIKPEINALSTIMFAVVLGLLLLANKKESIVRG
IK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=214, Percent_Identity=34.5794392523364, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1787081, Length=256, Percent_Identity=35.15625, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787714, Length=194, Percent_Identity=28.8659793814433, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788764, Length=179, Percent_Identity=26.8156424581006, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26815; Mature: 26815

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAPIFALVLFSFNDSKSMARWNGFTWKWYGQLLQNESIMSALYYTIVIAILASVISTIV
CCHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
GTISAIGIHKMRGKSKKLILNVNYLPILNTEIVTAVALMSLFVFVKMEFGFTTMLLAHIM
HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
FCLPYVILSVLPKMKQLPDNIEDAAMDLGATPIYALRKVILPQIKPGIVSGFLIAFTMSI
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DDFIISFFNAGNGVSNLSIEIYGMARRGIKPEINALSTIMFAVVLGLLLLANKKESIVRG
HHHHHHHHHCCCCCCEEEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
IK
CC
>Mature Secondary Structure
MYAPIFALVLFSFNDSKSMARWNGFTWKWYGQLLQNESIMSALYYTIVIAILASVISTIV
CCHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
GTISAIGIHKMRGKSKKLILNVNYLPILNTEIVTAVALMSLFVFVKMEFGFTTMLLAHIM
HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
FCLPYVILSVLPKMKQLPDNIEDAAMDLGATPIYALRKVILPQIKPGIVSGFLIAFTMSI
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DDFIISFFNAGNGVSNLSIEIYGMARRGIKPEINALSTIMFAVVLGLLLLANKKESIVRG
HHHHHHHHHCCCCCCEEEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]