Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is cotH [H]
Identifier: 126698605
GI number: 126698605
Start: 1191725
End: 1193632
Strand: Direct
Name: cotH [H]
Synonym: CD1021
Alternate gene names: 126698605
Gene position: 1191725-1193632 (Clockwise)
Preceding gene: 126698604
Following gene: 126698606
Centisome position: 27.78
GC content: 31.03
Gene sequence:
>1908_bases ATGAAAGATAAAAAATTTACCCTTCTTATCTCGATTATGATTGTATTTTTATGTGCTGTAGTTGGAGTTTATAGTACATC TAGCAACAAAAGTGTTGATTTATATAGTGATGTATATATTGAAAAATATTTTAACAGAGACAAGGTTATGGAAGTTAATA TAGAGATAGATGAAAGTGACTTGAAGGATATGAATGAAAATGCTATAAAAGAAGAATTTAAGGTTGCAAAAGTAACTGTA GATGGAGATACATATGGAAACGTAGGTATAAGAACTAAAGGAAATTCAAGTCTTATATCTGTAGCAAATAGTGATAGTGA TAGATACAGCTATAAGATTAATTTTGATAAGTATAATACTAGTCAAAGTATGGAAGGGCTTACTCAATTAAATCTTAATA ACTGTTACTCTGACCCATCTTATATGAGAGAGTTTTTAACATATAGTATTTGCGAGGAAATGGGATTAGCGACTCCAGAA TTTGCATATGCTAAAGTCTCTATAAATGGCGAATATCATGGTTTGTATTTGGCAGTAGAAGGATTAAAAGAGTCTTATCT TGAAAATAATTTTGGTAATGTAACTGGAGACTTATATAAGTCAGATGAAGGAAGCTCGTTGCAATATAAAGGAGATGACC CAGAAAGTTACTCAAACTTAATCGTTGAAAGTGATAAAAAGACAGCTGATTGGTCTAAAATTACAAAACTATTAAAATCT TTGGATACAGGTGAAGATATTGAAAAATATCTTGATGTAGATTCTGTCCTTAAAAATATAGCAATAAATACAGCTTTATT AAACCTTGATAGCTATCAAGGGAGTTTTGCCCATAACTATTATTTATATGAGCAAGATGGAGTATTTTCTATGTTACCAT GGGATTTTAATATGTCATTTGGTGGATTTAGTGGTTTTGGTGGAGGTAGTCAATCTATAGCAATTGATGAACCTACGACA GGTAATTTAGAAGATAGACCTCTCATATCCTCGTTATTAAAAAATGAGACATACAAAACAAAATACCATAAATATCTGGA AGAGATAGTAACAAAATACCTAGATTCAGACTATTTAGAGAATATGACAACAAAATTGCATGACATGATAGCATCATATG TAAAAGAAGACCCAACAGCATTTTATACTTATGAAGAATTTGAAAAAAATATAACATCTTCAATTGAAGATTCTAGTGAT AATAAGGGATTTGGTAATAAAGGGTTTGACAACAATAACTCTAATAACAGTGATTCTAATAATAATTCTAATAGTGAAAA TAAGCGCTCTGGAAATCAAAGTGATGAAAAAGAAGTTAATGCTGAATTAACATCAAGCGTAGTCAAAGCTAATACAGATA ATGAAACTAAAAATAAAACTACAAATGATAGTGAAAGTAAGAATAATACAGATAAAGATAAAAGTGGAAATGATAATAAT CAAAAGCTAGAAGGTCCTATGGGTAAAGGAGGTAAGTCAATACCAGGGGTTTTGGAAGTTGCAGAAGATATGAGTAAAAC TATAAAATCTCAATTAAGTGGAGAAACTTCTTCGACAAAGCAAAACTCTGGTGATGAAAGTTCAAGTGGAATTAAAGGTA GTGAAAAGTTTGATGAGGATATGAGTGGTATGCCAGAACCACCTGAGGGAATGGATGGTAAAATGCCACCAGGAATGGGT AATATGGATAAGGGAGATATGAATGGTAAAAATGGCAATATGAATATGGATAGAAATCAAGATAATCCAAGAGAAGCTGG AGGTTTTGGCAATAGAGGAGGAGGCTCTGTGAGTAAAACAACAACATACTTCAAATTAATTTTAGGTGGAGCTTCAATGA TAATAATGTCGATTATGTTAGTTGGTGTATCAAGGGTAAAGAGAAGAAGATTTATAAAGTCAAAATAA
Upstream 100 bases:
>100_bases ACAAGTCTTATAAATGACTTGAGTCAAGTAGATGGAGTTACTAATGCAGTTCTTGTAAGTTATAATGGTGACTATGTAGC ATAGAGAGGAGTAATCTTTT
Downstream 100 bases:
>100_bases GATTAAAATTGAATATAAATAATTTTAATACTGTTAAGTCTAAATATTTACTTAGCAGTATTTTTTTAGAAAATAATGTA TTTGGTTAATAATATAAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MKDKKFTLLISIMIVFLCAVVGVYSTSSNKSVDLYSDVYIEKYFNRDKVMEVNIEIDESDLKDMNENAIKEEFKVAKVTV DGDTYGNVGIRTKGNSSLISVANSDSDRYSYKINFDKYNTSQSMEGLTQLNLNNCYSDPSYMREFLTYSICEEMGLATPE FAYAKVSINGEYHGLYLAVEGLKESYLENNFGNVTGDLYKSDEGSSLQYKGDDPESYSNLIVESDKKTADWSKITKLLKS LDTGEDIEKYLDVDSVLKNIAINTALLNLDSYQGSFAHNYYLYEQDGVFSMLPWDFNMSFGGFSGFGGGSQSIAIDEPTT GNLEDRPLISSLLKNETYKTKYHKYLEEIVTKYLDSDYLENMTTKLHDMIASYVKEDPTAFYTYEEFEKNITSSIEDSSD NKGFGNKGFDNNNSNNSDSNNNSNSENKRSGNQSDEKEVNAELTSSVVKANTDNETKNKTTNDSESKNNTDKDKSGNDNN QKLEGPMGKGGKSIPGVLEVAEDMSKTIKSQLSGETSSTKQNSGDESSSGIKGSEKFDEDMSGMPEPPEGMDGKMPPGMG NMDKGDMNGKNGNMNMDRNQDNPREAGGFGNRGGGSVSKTTTYFKLILGGASMIIMSIMLVGVSRVKRRRFIKSK
Sequences:
>Translated_635_residues MKDKKFTLLISIMIVFLCAVVGVYSTSSNKSVDLYSDVYIEKYFNRDKVMEVNIEIDESDLKDMNENAIKEEFKVAKVTV DGDTYGNVGIRTKGNSSLISVANSDSDRYSYKINFDKYNTSQSMEGLTQLNLNNCYSDPSYMREFLTYSICEEMGLATPE FAYAKVSINGEYHGLYLAVEGLKESYLENNFGNVTGDLYKSDEGSSLQYKGDDPESYSNLIVESDKKTADWSKITKLLKS LDTGEDIEKYLDVDSVLKNIAINTALLNLDSYQGSFAHNYYLYEQDGVFSMLPWDFNMSFGGFSGFGGGSQSIAIDEPTT GNLEDRPLISSLLKNETYKTKYHKYLEEIVTKYLDSDYLENMTTKLHDMIASYVKEDPTAFYTYEEFEKNITSSIEDSSD NKGFGNKGFDNNNSNNSDSNNNSNSENKRSGNQSDEKEVNAELTSSVVKANTDNETKNKTTNDSESKNNTDKDKSGNDNN QKLEGPMGKGGKSIPGVLEVAEDMSKTIKSQLSGETSSTKQNSGDESSSGIKGSEKFDEDMSGMPEPPEGMDGKMPPGMG NMDKGDMNGKNGNMNMDRNQDNPREAGGFGNRGGGSVSKTTTYFKLILGGASMIIMSIMLVGVSRVKRRRFIKSK >Mature_635_residues MKDKKFTLLISIMIVFLCAVVGVYSTSSNKSVDLYSDVYIEKYFNRDKVMEVNIEIDESDLKDMNENAIKEEFKVAKVTV DGDTYGNVGIRTKGNSSLISVANSDSDRYSYKINFDKYNTSQSMEGLTQLNLNNCYSDPSYMREFLTYSICEEMGLATPE FAYAKVSINGEYHGLYLAVEGLKESYLENNFGNVTGDLYKSDEGSSLQYKGDDPESYSNLIVESDKKTADWSKITKLLKS LDTGEDIEKYLDVDSVLKNIAINTALLNLDSYQGSFAHNYYLYEQDGVFSMLPWDFNMSFGGFSGFGGGSQSIAIDEPTT GNLEDRPLISSLLKNETYKTKYHKYLEEIVTKYLDSDYLENMTTKLHDMIASYVKEDPTAFYTYEEFEKNITSSIEDSSD NKGFGNKGFDNNNSNNSDSNNNSNSENKRSGNQSDEKEVNAELTSSVVKANTDNETKNKTTNDSESKNNTDKDKSGNDNN QKLEGPMGKGGKSIPGVLEVAEDMSKTIKSQLSGETSSTKQNSGDESSSGIKGSEKFDEDMSGMPEPPEGMDGKMPPGMG NMDKGDMNGKNGNMNMDRNQDNPREAGGFGNRGGGSVSKTTTYFKLILGGASMIIMSIMLVGVSRVKRRRFIKSK
Specific function: Involved in the assembly of several proteins in the inner and outer layer of the spore coat. Stabilizes CotC and CotU in the mother cell compartment of sporulating cells and promotes the assembly of both early and late forms of CotC-related polypeptides o
COG id: COG5337
COG function: function code M; Spore coat assembly protein
Gene ontology:
Cell location: Spore wall, spore coat [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CotH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014867 [H]
Pfam domain/function: PF08757 CotH [H]
EC number: NA
Molecular weight: Translated: 70450; Mature: 70450
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDKKFTLLISIMIVFLCAVVGVYSTSSNKSVDLYSDVYIEKYFNRDKVMEVNIEIDESD CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCEEEEEEEECHHH LKDMNENAIKEEFKVAKVTVDGDTYGNVGIRTKGNSSLISVANSDSDRYSYKINFDKYNT HHHHHHHHHHHCEEEEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEEECCCCC SQSMEGLTQLNLNNCYSDPSYMREFLTYSICEEMGLATPEFAYAKVSINGEYHGLYLAVE HHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEH GLKESYLENNFGNVTGDLYKSDEGSSLQYKGDDPESYSNLIVESDKKTADWSKITKLLKS HHHHHHHHCCCCCCCCCCEECCCCCEEEECCCCCHHHHCEEEECCCCCCCHHHHHHHHHH LDTGEDIEKYLDVDSVLKNIAINTALLNLDSYQGSFAHNYYLYEQDGVFSMLPWDFNMSF CCCCHHHHHHHCHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCEEEECCCCCCCCC GGFSGFGGGSQSIAIDEPTTGNLEDRPLISSLLKNETYKTKYHKYLEEIVTKYLDSDYLE CCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHH NMTTKLHDMIASYVKEDPTAFYTYEEFEKNITSSIEDSSDNKGFGNKGFDNNNSNNSDSN HHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC NNSNSENKRSGNQSDEKEVNAELTSSVVKANTDNETKNKTTNDSESKNNTDKDKSGNDNN CCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QKLEGPMGKGGKSIPGVLEVAEDMSKTIKSQLSGETSSTKQNSGDESSSGIKGSEKFDED CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH MSGMPEPPEGMDGKMPPGMGNMDKGDMNGKNGNMNMDRNQDNPREAGGFGNRGGGSVSKT HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHH TTYFKLILGGASMIIMSIMLVGVSRVKRRRFIKSK HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKDKKFTLLISIMIVFLCAVVGVYSTSSNKSVDLYSDVYIEKYFNRDKVMEVNIEIDESD CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCEEEEEEEECHHH LKDMNENAIKEEFKVAKVTVDGDTYGNVGIRTKGNSSLISVANSDSDRYSYKINFDKYNT HHHHHHHHHHHCEEEEEEEECCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEEECCCCC SQSMEGLTQLNLNNCYSDPSYMREFLTYSICEEMGLATPEFAYAKVSINGEYHGLYLAVE HHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEH GLKESYLENNFGNVTGDLYKSDEGSSLQYKGDDPESYSNLIVESDKKTADWSKITKLLKS HHHHHHHHCCCCCCCCCCEECCCCCEEEECCCCCHHHHCEEEECCCCCCCHHHHHHHHHH LDTGEDIEKYLDVDSVLKNIAINTALLNLDSYQGSFAHNYYLYEQDGVFSMLPWDFNMSF CCCCHHHHHHHCHHHHHHHHHHHHHEEECCCCCCCCEEEEEEEECCCEEEECCCCCCCCC GGFSGFGGGSQSIAIDEPTTGNLEDRPLISSLLKNETYKTKYHKYLEEIVTKYLDSDYLE CCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHH NMTTKLHDMIASYVKEDPTAFYTYEEFEKNITSSIEDSSDNKGFGNKGFDNNNSNNSDSN HHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC NNSNSENKRSGNQSDEKEVNAELTSSVVKANTDNETKNKTTNDSESKNNTDKDKSGNDNN CCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QKLEGPMGKGGKSIPGVLEVAEDMSKTIKSQLSGETSSTKQNSGDESSSGIKGSEKFDED CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH MSGMPEPPEGMDGKMPPGMGNMDKGDMNGKNGNMNMDRNQDNPREAGGFGNRGGGSVSKT HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHH TTYFKLILGGASMIIMSIMLVGVSRVKRRRFIKSK HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8755863; 8991897; 9353933; 9384377; 7814326; 10198031 [H]