Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is mepA [H]
Identifier: 126698569
GI number: 126698569
Start: 1148318
End: 1149685
Strand: Direct
Name: mepA [H]
Synonym: CD0985
Alternate gene names: 126698569
Gene position: 1148318-1149685 (Clockwise)
Preceding gene: 126698568
Following gene: 126698570
Centisome position: 26.77
GC content: 30.92
Gene sequence:
>1368_bases ATGGAAAATTCAAACACTAACTTAGGTAGTGAAAGTGTGGGTAAATTATTATTTAAACTTGCTACACCTGCTATTATCGC ACAAATTGTAAATGTTTTATACAACATAGTCGATAGGATTTTTATTGGTAGAATGGAAAATGGAGAAGTTGCTATGGCTG GTGTTGGAGTGGCATTTCCAATAATAATTATAATAACTGCATGTAGTTATTTAATCGGTATGGGAGGAGGTCCATTAGCT GCTATAAAAATGGGTGAGCAAAACAATGATGAGGCAGAGAAAATAATGAGTAACAGTTTTTCTGTATTGGTGATTTTAGC AATACTTTTGACTATAGGTTTTAAGATTGGAAAAGAGCCTTTACTTTGGATGTTTGGAGCAAGTGAATCTACAATTGGAT ATTCAATGGACTATTTAAATATTTATTTAATAGGTACAGTGTTTGTTCAGATTTCAATGGGTATGAATACTTTTATAAAT ACCCAAGGGTTTGCTACAACTGGAATGATGACAGTTGCTATAGGTGCTTTAATAAACATAATACTTGACCCGATTTTTAT ATTTGGCTTTAATATGGGTGTAAAAGGAGCTGCATTAGCTACTATAATTGCACAAGGCGTTTCTGCTATTTGGGTACTTA TGTTTCTCTTTGGAAAGAAAAGTATACTCAAAATAAAAAAGAAGTATATGATACCAAAAGCAAGTATCATCTTACCAGTG CTTGGCTTGGGAATCTCTCCATTTATAATGCAATCTACAGAAAGTTTAGTACTTATAGCCTTAAATAGTAAATTACAAAT GTATGGAGGAGATTTAGCAGTAGGTTCAATGGCTATAATGAGCAGTATAATGCAAATTCTTATGCTTCCTAATATGGGGG TTACACAAGGAGCACAACCAATAATAAGTTATAATTATGGTTCAGGTCAACTTGATAGAGTAAAAAAGACATTTAAGTTG TGTTTGTTGTCATGTTTTACATATTCTACTATTTTATGGCTTTTATTAATGATATTTCCTGCATTTTTTGTTAGTATATT TAATAAGAATCCGCAGTTACTTAGTATGACTAGTTGGAGTATAAAAATATATTTTGCTGGTGCTTTTATGTTTGGGATTC AAATAGCTTGTCAACAGACATTTTTAGCACTTGGAAAAGCAACAATATCTTTGGTTTTAGCTCTACTTAGAAAGATTGTA CTTTTAATACCTTTAATATTTATACTCCCAACATTCTTTAATGAAAAACTTTTTGCAGTAATTTTAGCAGAGCCAGTTGC AGATATAACAGCTGCTACTATAACAGCAATTTCTTTCTTTATATTTTATAAATGTTTTCTATCAAAACCTAAAGCAATAA AAGAATAA
Upstream 100 bases:
>100_bases AGGGAAAGTACTCTAAATTTGTCTGCTAATAAAATGAAATTTTTATATAGAATAAAATTTTAGTGATACATTTTAATTAT TGGATTGAGGAGGTTTTAAA
Downstream 100 bases:
>100_bases GATATACAATATAAATTTTTTATGAAAATATTTTATTAGATAAAAATTAGAATTTGTATTTTAATTTAATAAGATATTTT CTATAATGTATAAATATATG
Product: drug/sodium antiporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MENSNTNLGSESVGKLLFKLATPAIIAQIVNVLYNIVDRIFIGRMENGEVAMAGVGVAFPIIIIITACSYLIGMGGGPLA AIKMGEQNNDEAEKIMSNSFSVLVILAILLTIGFKIGKEPLLWMFGASESTIGYSMDYLNIYLIGTVFVQISMGMNTFIN TQGFATTGMMTVAIGALINIILDPIFIFGFNMGVKGAALATIIAQGVSAIWVLMFLFGKKSILKIKKKYMIPKASIILPV LGLGISPFIMQSTESLVLIALNSKLQMYGGDLAVGSMAIMSSIMQILMLPNMGVTQGAQPIISYNYGSGQLDRVKKTFKL CLLSCFTYSTILWLLLMIFPAFFVSIFNKNPQLLSMTSWSIKIYFAGAFMFGIQIACQQTFLALGKATISLVLALLRKIV LLIPLIFILPTFFNEKLFAVILAEPVADITAATITAISFFIFYKCFLSKPKAIKE
Sequences:
>Translated_455_residues MENSNTNLGSESVGKLLFKLATPAIIAQIVNVLYNIVDRIFIGRMENGEVAMAGVGVAFPIIIIITACSYLIGMGGGPLA AIKMGEQNNDEAEKIMSNSFSVLVILAILLTIGFKIGKEPLLWMFGASESTIGYSMDYLNIYLIGTVFVQISMGMNTFIN TQGFATTGMMTVAIGALINIILDPIFIFGFNMGVKGAALATIIAQGVSAIWVLMFLFGKKSILKIKKKYMIPKASIILPV LGLGISPFIMQSTESLVLIALNSKLQMYGGDLAVGSMAIMSSIMQILMLPNMGVTQGAQPIISYNYGSGQLDRVKKTFKL CLLSCFTYSTILWLLLMIFPAFFVSIFNKNPQLLSMTSWSIKIYFAGAFMFGIQIACQQTFLALGKATISLVLALLRKIV LLIPLIFILPTFFNEKLFAVILAEPVADITAATITAISFFIFYKCFLSKPKAIKE >Mature_455_residues MENSNTNLGSESVGKLLFKLATPAIIAQIVNVLYNIVDRIFIGRMENGEVAMAGVGVAFPIIIIITACSYLIGMGGGPLA AIKMGEQNNDEAEKIMSNSFSVLVILAILLTIGFKIGKEPLLWMFGASESTIGYSMDYLNIYLIGTVFVQISMGMNTFIN TQGFATTGMMTVAIGALINIILDPIFIFGFNMGVKGAALATIIAQGVSAIWVLMFLFGKKSILKIKKKYMIPKASIILPV LGLGISPFIMQSTESLVLIALNSKLQMYGGDLAVGSMAIMSSIMQILMLPNMGVTQGAQPIISYNYGSGQLDRVKKTFKL CLLSCFTYSTILWLLLMIFPAFFVSIFNKNPQLLSMTSWSIKIYFAGAFMFGIQIACQQTFLALGKATISLVLALLRKIV LLIPLIFILPTFFNEKLFAVILAEPVADITAATITAISFFIFYKCFLSKPKAIKE
Specific function: Multidrug resistance efflux protein [H]
COG id: COG0534
COG function: function code V; Na+-driven multidrug efflux pump
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MepA subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002528 - InterPro: IPR015522 [H]
Pfam domain/function: PF01554 MatE [H]
EC number: NA
Molecular weight: Translated: 49516; Mature: 49516
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENSNTNLGSESVGKLLFKLATPAIIAQIVNVLYNIVDRIFIGRMENGEVAMAGVGVAFP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHH IIIIITACSYLIGMGGGPLAAIKMGEQNNDEAEKIMSNSFSVLVILAILLTIGFKIGKEP HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC LLWMFGASESTIGYSMDYLNIYLIGTVFVQISMGMNTFINTQGFATTGMMTVAIGALINI EEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHH ILDPIFIFGFNMGVKGAALATIIAQGVSAIWVLMFLFGKKSILKIKKKYMIPKASIILPV HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH LGLGISPFIMQSTESLVLIALNSKLQMYGGDLAVGSMAIMSSIMQILMLPNMGVTQGAQP HHCCCCHHHHCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC IISYNYGSGQLDRVKKTFKLCLLSCFTYSTILWLLLMIFPAFFVSIFNKNPQLLSMTSWS EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEE IKIYFAGAFMFGIQIACQQTFLALGKATISLVLALLRKIVLLIPLIFILPTFFNEKLFAV EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ILAEPVADITAATITAISFFIFYKCFLSKPKAIKE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MENSNTNLGSESVGKLLFKLATPAIIAQIVNVLYNIVDRIFIGRMENGEVAMAGVGVAFP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHH IIIIITACSYLIGMGGGPLAAIKMGEQNNDEAEKIMSNSFSVLVILAILLTIGFKIGKEP HHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC LLWMFGASESTIGYSMDYLNIYLIGTVFVQISMGMNTFINTQGFATTGMMTVAIGALINI EEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHH ILDPIFIFGFNMGVKGAALATIIAQGVSAIWVLMFLFGKKSILKIKKKYMIPKASIILPV HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHH LGLGISPFIMQSTESLVLIALNSKLQMYGGDLAVGSMAIMSSIMQILMLPNMGVTQGAQP HHCCCCHHHHCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC IISYNYGSGQLDRVKKTFKLCLLSCFTYSTILWLLLMIFPAFFVSIFNKNPQLLSMTSWS EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEE IKIYFAGAFMFGIQIACQQTFLALGKATISLVLALLRKIVLLIPLIFILPTFFNEKLFAV EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ILAEPVADITAATITAISFFIFYKCFLSKPKAIKE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA