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The map label for this gene is ycf4

Identifier: 126696686

GI number: 126696686

Start: 1125621

End: 1126178

Strand: Reverse

Name: ycf4

Synonym: P9301_13481

Alternate gene names: 126696686

Gene position: 1126178-1125621 (Counterclockwise)

Preceding gene: 126696689

Following gene: 126696685

Centisome position: 68.59

GC content: 31.72

Gene sequence:

>558_bases
ATGAATTCAGACCTCAAGTCTTTCGATAAAATCGAACAAAAAATTGGTGGATCAAGAAAAATTTCAAATTACATTATTGG
AGGAATGCTAACTATAGGAGGTATTGGTTTTCTTTTGGCCTCTATATCTAGCTACACAGGAAGGGATTTATTACCTCTAG
GAAATCCTTCAACTTTATTGTTTATCCCTCAAGGAATAATAATGGGAGCATATGGAGTAATAGCCAACTTATTAAATTTT
TACTTGTGGTATTTGGTTTACATAAACTTTGGTTCAGGAAGTAATTATTTTGATAAATCATCAAAATCTATAGAAATAAG
AAGAAAAGGATTATTCAAAGATATTGAAGTTAAATTAAATTTTGATGAAATTAAATCGGTCAAGTTAGATATAAGTGAGG
GATTTAATCCTAGAAGAAGAATTGCATTAGTATTAAAAGGAAGAAAAAAACCTCTCCCTTTAAGCGGAGCAGGTGAACTC
AAACCACTTCTTCAAGTTGAAGAGGAGGGGGCTCGTCTGGCTAAATTTTTGGATGTTAATTTGGAGGGCTTAAAATAA

Upstream 100 bases:

>100_bases
TGCCTTGTAAAGCTTTCCTGACTTTTTTATTAAAAATTAGGTAAGAATACTCCCTTAATTTGTTAAATTATCTGAATTAG
GCTCTAAAAAAGGGATAAAA

Downstream 100 bases:

>100_bases
AAAAAAAATATTTATTAAGAATATTATTTTTTATACAGGTTCTGTTTTTGTTTCAAGCTTGTAGTTATAAAAATAAGGTT
GATTCAACTTATTATTGCCA

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNSDLKSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLLFIPQGIIMGAYGVIANLLNF
YLWYLVYINFGSGSNYFDKSSKSIEIRRKGLFKDIEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLDVNLEGLK

Sequences:

>Translated_185_residues
MNSDLKSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLLFIPQGIIMGAYGVIANLLNF
YLWYLVYINFGSGSNYFDKSSKSIEIRRKGLFKDIEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLDVNLEGLK
>Mature_185_residues
MNSDLKSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLLFIPQGIIMGAYGVIANLLNF
YLWYLVYINFGSGSNYFDKSSKSIEIRRKGLFKDIEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLDVNLEGLK

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF4_PROM0 (A3PDZ6)

Other databases:

- EMBL:   CP000576
- RefSeq:   YP_001091572.1
- STRING:   A3PDZ6
- GeneID:   4912434
- GenomeReviews:   CP000576_GR
- KEGG:   pmg:P9301_13481
- eggNOG:   NOG06447
- HOGENOM:   HBG439339
- OMA:   LTRVGQP
- ProtClustDB:   PRK02542
- BioCyc:   PMAR167546:P9301ORF_1368-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00437
- InterPro:   IPR003359
- ProDom:   PD003698

Pfam domain/function: PF02392 Ycf4

EC number: NA

Molecular weight: Translated: 20505; Mature: 20505

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1e48357c)-; HASH(0x1e9f68b8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDLKSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLL
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
FIPQGIIMGAYGVIANLLNFYLWYLVYINFGSGSNYFDKSSKSIEIRRKGLFKDIEVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGELKPLLQVEEEGARLAKFLDVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LEGLK
CCCCH
>Mature Secondary Structure
MNSDLKSFDKIEQKIGGSRKISNYIIGGMLTIGGIGFLLASISSYTGRDLLPLGNPSTLL
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
FIPQGIIMGAYGVIANLLNFYLWYLVYINFGSGSNYFDKSSKSIEIRRKGLFKDIEVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGELKPLLQVEEEGARLAKFLDVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LEGLK
CCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA