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The map label for this gene is rsmD [H]

Identifier: 126696503

GI number: 126696503

Start: 975662

End: 976261

Strand: Reverse

Name: rsmD [H]

Synonym: P9301_11651

Alternate gene names: 126696503

Gene position: 976261-975662 (Counterclockwise)

Preceding gene: 126696504

Following gene: 126696501

Centisome position: 59.46

GC content: 28.83

Gene sequence:

>600_bases
ATGAAGACAAACTTAAGATTAATAGGTGGTAAAAAACTCCAAAGTCCAAATAATTCTTATACCAGACCTACAACTTTGAG
AGTGAGAGAGGCTGTATTTAATATACTGAACAGCAGAGTTGAAAACAGTAACTGGTTAGATTTATTTAGTGGAACAGGGT
CCATATCCTGTGAAGCCTATAACCATGGGGCAAGAAAAATAATTGCAATTGAAAAAAACAAAATCAACTCAAAAATTTGC
TTAGAAAATTTACTCTCGTTGGAGAATATAGAGAATAGGAGAAATGACATAGAAGTTATTTGTAAAGACGTTTTGAAATG
GACAAAACCTAATTATGAAAGAAACTTATCATCTAGAAATATGGATTTAAACAAATTAAAATTTGATTTTGTTTATCTAG
ATCCTCCATACGATGTAGATTTCCATGAATTAGTTTTAAATCAATTATTTGATTGTGACATTTTAAAAAAAGATTCAATA
GTTATTTGTGAACATTCACCAAACCTATTAATTAAAAAAAGTACTTTGTGGGAAACTATAGATGTAAGAAATTATGGGCA
ATCAAGATTAACATTTTTAATCAATGTCCAACATACCTGA

Upstream 100 bases:

>100_bases
AATTTATTGGCCTGTCAATTTCATCCGGAAAAATCTGGAAAAACCGGTGAAAAACTTTTGAGAAGATGGCTTAGTAATAT
TCAATAATTGATAATTACTG

Downstream 100 bases:

>100_bases
ACCTCTTCTGTATTGATTCCATGCGCTTACGAATAATCCAAGAAGAGTTATTGGAACTAAACCTAAAACAATTCCACATA
GAAGAGGCTCGATCATTTTT

Product: N6-adenine-specific methylase

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKTNLRLIGGKKLQSPNNSYTRPTTLRVREAVFNILNSRVENSNWLDLFSGTGSISCEAYNHGARKIIAIEKNKINSKIC
LENLLSLENIENRRNDIEVICKDVLKWTKPNYERNLSSRNMDLNKLKFDFVYLDPPYDVDFHELVLNQLFDCDILKKDSI
VICEHSPNLLIKKSTLWETIDVRNYGQSRLTFLINVQHT

Sequences:

>Translated_199_residues
MKTNLRLIGGKKLQSPNNSYTRPTTLRVREAVFNILNSRVENSNWLDLFSGTGSISCEAYNHGARKIIAIEKNKINSKIC
LENLLSLENIENRRNDIEVICKDVLKWTKPNYERNLSSRNMDLNKLKFDFVYLDPPYDVDFHELVLNQLFDCDILKKDSI
VICEHSPNLLIKKSTLWETIDVRNYGQSRLTFLINVQHT
>Mature_199_residues
MKTNLRLIGGKKLQSPNNSYTRPTTLRVREAVFNILNSRVENSNWLDLFSGTGSISCEAYNHGARKIIAIEKNKINSKIC
LENLLSLENIENRRNDIEVICKDVLKWTKPNYERNLSSRNMDLNKLKFDFVYLDPPYDVDFHELVLNQLFDCDILKKDSI
VICEHSPNLLIKKSTLWETIDVRNYGQSRLTFLINVQHT

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 23161; Mature: 23161

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTNLRLIGGKKLQSPNNSYTRPTTLRVREAVFNILNSRVENSNWLDLFSGTGSISCEAY
CCCCEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEE
NHGARKIIAIEKNKINSKICLENLLSLENIENRRNDIEVICKDVLKWTKPNYERNLSSRN
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCCCCC
MDLNKLKFDFVYLDPPYDVDFHELVLNQLFDCDILKKDSIVICEHSPNLLIKKSTLWETI
CCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCEECCCCEEEEECCCCEEEECCCHHEEE
DVRNYGQSRLTFLINVQHT
ECCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKTNLRLIGGKKLQSPNNSYTRPTTLRVREAVFNILNSRVENSNWLDLFSGTGSISCEAY
CCCCEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEE
NHGARKIIAIEKNKINSKICLENLLSLENIENRRNDIEVICKDVLKWTKPNYERNLSSRN
CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHCCCCCCC
MDLNKLKFDFVYLDPPYDVDFHELVLNQLFDCDILKKDSIVICEHSPNLLIKKSTLWETI
CCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCEECCCCEEEEECCCCEEEECCCHHEEE
DVRNYGQSRLTFLINVQHT
ECCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]