| Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
|---|---|
| Accession | NC_009091 |
| Length | 1,641,879 |
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The map label for this gene is nrdJ [H]
Identifier: 126696052
GI number: 126696052
Start: 633692
End: 636025
Strand: Reverse
Name: nrdJ [H]
Synonym: P9301_07141
Alternate gene names: 126696052
Gene position: 636025-633692 (Counterclockwise)
Preceding gene: 126696056
Following gene: 126696051
Centisome position: 38.74
GC content: 37.06
Gene sequence:
>2334_bases GTGACTGTTGCACCAAATAAAGCTTCTTCAGAGAGCAATTCCAATAATCTTAAAAAAGATGATTTTCCAAAGACTGCTCC AGCTGCTTATCCTGTTTTTTTTAGATCTTACAGTAGGAAAACTATCTCTGGCAAAAGGGAGAACTGGAGCGAAGTAGGTG AAAGGAATTTATCAGGCTTAAAAGAATTAGGAAAACTTTCTGATGAAGAATTGATCCTAATGAGAGAGATGCAAAGCAAC CAAAAAGCCCAACCTTCAGGGAGATGGTTATGGATTGGAGGGACTCCTTGGATTAATAAAAACCAAAATTTCTCTGGGGC ATATAACTGTACTTCTACAAACTTAATTGATTGGGAAGCCTTTGCTTTGATGATGGACTTAGCAATGATGGGATGTGGTA CAGGGGCAATAATTGAGCCTCATTTTATAAACAATTTACCTACGGTAATAAACAAAATAAATATCAAATCAGTTAGTGAA GTTGGAATAACTCCTATAAATCAAAGGAAAGAAAAATCATCATTAGAAATCAAAGGGAAAGACCTTCATATCAAAGTTGG AGATAGCAGAAGAGGATGGGTAGATAGCTACAAATATCTTCTTGAGGCATCAAGTAATGAAAATCTTGAAAGAGAAATTG ATGTTTATATTGATTTGGAAGATATTAGGCCTGCTGGAGAATCATTAAAAGGTTTTGGTGGGATGGCAAATCCTATCAAA TTGAAAGATCTTTACTCCAGAGTCGCATCACTTCTTGGAAAGGCAATTGGCAGGAAATTAAGTACAGTGGAGTGTTGTTT ATTAATTGATGAAGCTGCGGTAACCATAGTTGCTGGGAATATAAGAAGAAGCGCTGGGATGAGACAATTTGCTTCAGATG ATAAGGAAGCAGCATCGGCAAAAGAAAATTTATGGAGTCAAGATGAGAATGGTAATTGGAGAATAGATCCTGAAAAAGAT GCTCTCAGGATGGCTAATCATACTAGGGTTTACCATACAAAACCAACTTACCAAACTGTTTTGGATGCAGTTACAAAACA ATTCCATTCAGGTGAGGGAGCTATTCAATTTGCTCCAGAGGCAATCGCAAGGTCAAATGCAGATATTCTCAAAGATGATG AATTGAGAAAGGAATTTATTGAAATTTACTCAGAACAAGGTAAGGATGAAGCGAGAAATTGGATAAATAGTAGTTATGGT CCATTTTCAGAAGAAGAGTTAGACCACAGGATGAGTAGATATGGACTTAACCCTTGCGGGGAGATCTTGGGAAATGATTT CCACTGTAATTTGGCTGAAGTTCATTTAAATCAGATTGATCCGGGAGATTTTGAAGAGCAAAAAAAAGCTTTTAAAGCCG CAGCTCTTTCCGTAGCATGCTTACTTAATCATGAATTTGAAGTTGAGCGTTACAGAAAAAGTAGAGAATATGACCCTATT GTTGGGGTAAGTTTTACAGGACTATTTGACTTCTGTGTACATGCTTTTGGGACGCCATGGTTGAAGTGGTGGGAAGCAGG AAGGCCTAATAGCGAAGAAGGGAAGGCATTCAAAGAAAAAGAAGCTAAATTCTTAGATTCTTGGAGAAAAATAGTAAAAG AAACTGTATGGGAATATTGTGATAAACATAATCTAAGAAGGCCAAATCGATGCACAACTGTTCAGCCAGCTGGGACTAAA AGTCTTCTAACTGGGGCAGCTCCAGGTTGGCATCCGCCAAAAGCTCAAAGATTCATTAGAAGAATAACTTTCAGGAAAAA TGATCCAATTGCTTTAGCTTGCATGGATTATGGTTACTCAGTTGTTCCATCTCAATCTGATAAAGATGAAAATGGCTGCT TGCTTGATAATCCATTTGATCCTAGATGCACAGAATGGTTAGTTGAAATCCCTACAGAAGTTAGTTGGGCAAATATAGAC GGAGCGGACCAAATAGATATAAATAATTTCTCAGCATTAGCTCAATTTGATTTTTACATGCAAGTGCAAAAATTTTACAC AGAGCATAATACCTCTGCAACAGTAGAATTTAGAGAAAACGAAATAGAGGATCTAGCTAAGGCTATACATAATGCTATAG AAAATAATGAGGGATATATTTCAGCGGCATTGCTAGCTCGATTTAGTGCCAACGCTACTTTCCCGAGATTACCTTTTGAA CCAATTAGTAAAGAGGAATATATATCATTGCAAAATAAAGTTATAGAAAGGAAAGTTAATAACGATTTCTTTGACGCTTT GAATAAATATGATGTTGGAGAACTATCTGAAGCAGGACCAGCAGGTTGTGATTCAGATAAGTGCCTGCTTCCTCTAGCTA AACCAAAAGACTAG
Upstream 100 bases:
>100_bases TAATTCTACACAAACCGTTAAATAGTGGTAAGAATGGTTGCAGACGCCACAGGTAGAGTTATTCTTCCAGTACGGGTTAT TTACATACATTTTTTTTATC
Downstream 100 bases:
>100_bases ATATTAAGTTATTTGTAAATAAAAAATATAAATTAGTTTTTAAAAATTTAATTTATGGCTACCTCTTAAATAGGGACATA AATTATTTATGACATTAAGC
Product: ribonucleotide reductase (class II)
Products: NA
Alternate protein names: RTPR [H]
Number of amino acids: Translated: 777; Mature: 776
Protein sequence:
>777_residues MTVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTISGKRENWSEVGERNLSGLKELGKLSDEELILMREMQSN QKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEAFALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSE VGITPINQRKEKSSLEIKGKDLHIKVGDSRRGWVDSYKYLLEASSNENLEREIDVYIDLEDIRPAGESLKGFGGMANPIK LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASDDKEAASAKENLWSQDENGNWRIDPEKD ALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPEAIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYG PFSEEELDHRMSRYGLNPCGEILGNDFHCNLAEVHLNQIDPGDFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYCDKHNLRRPNRCTTVQPAGTK SLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYSVVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANID GADQIDINNFSALAQFDFYMQVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE PISKEEYISLQNKVIERKVNNDFFDALNKYDVGELSEAGPAGCDSDKCLLPLAKPKD
Sequences:
>Translated_777_residues MTVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTISGKRENWSEVGERNLSGLKELGKLSDEELILMREMQSN QKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEAFALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSE VGITPINQRKEKSSLEIKGKDLHIKVGDSRRGWVDSYKYLLEASSNENLEREIDVYIDLEDIRPAGESLKGFGGMANPIK LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASDDKEAASAKENLWSQDENGNWRIDPEKD ALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPEAIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYG PFSEEELDHRMSRYGLNPCGEILGNDFHCNLAEVHLNQIDPGDFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYCDKHNLRRPNRCTTVQPAGTK SLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYSVVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANID GADQIDINNFSALAQFDFYMQVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE PISKEEYISLQNKVIERKVNNDFFDALNKYDVGELSEAGPAGCDSDKCLLPLAKPKD >Mature_776_residues TVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTISGKRENWSEVGERNLSGLKELGKLSDEELILMREMQSNQ KAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEAFALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSEV GITPINQRKEKSSLEIKGKDLHIKVGDSRRGWVDSYKYLLEASSNENLEREIDVYIDLEDIRPAGESLKGFGGMANPIKL KDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASDDKEAASAKENLWSQDENGNWRIDPEKDA LRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPEAIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYGP FSEEELDHRMSRYGLNPCGEILGNDFHCNLAEVHLNQIDPGDFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPIV GVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYCDKHNLRRPNRCTTVQPAGTKS LLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYSVVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANIDG ADQIDINNFSALAQFDFYMQVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFEP ISKEEYISLQNKVIERKVNNDFFDALNKYDVGELSEAGPAGCDSDKCLLPLAKPKD
Specific function: Unknown
COG id: COG1372
COG function: function code L; Intein/homing endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class II ribonucleoside-triphosphate reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000788 - InterPro: IPR013345 [H]
Pfam domain/function: PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 87761; Mature: 87630
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTISGKRENWSEVGERNLSGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHH KELGKLSDEELILMREMQSNQKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEA HHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH FALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSEVGITPINQRKEKSSLEIKGK HHHHHHHHHHCCCCCCEECCHHHCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEECC DLHIKVGDSRRGWVDSYKYLLEASSNENLEREIDVYIDLEDIRPAGESLKGFGGMANPIK EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCCEE LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASDDKEAASA HHHHHHHHHHHHHHHHCCHHCHHHHHEEECCCEEEEEECCHHHHHHHHHHHCCCHHHHHH KENLWSQDENGNWRIDPEKDALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPE HHHHCCCCCCCCEEECCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECHH AIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYGPFSEEELDHRMSRYGLNPCG HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH EILGNDFHCNLAEVHLNQIDPGDFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI HHCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCE VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYC ECEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH DKHNLRRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYS HHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCE VVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANIDGADQIDINNFSALAQFDFYM ECCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHHHHH QVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCC PISKEEYISLQNKVIERKVNNDFFDALNKYDVGELSEAGPAGCDSDKCLLPLAKPKD CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCC >Mature Secondary Structure TVAPNKASSESNSNNLKKDDFPKTAPAAYPVFFRSYSRKTISGKRENWSEVGERNLSGL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHH KELGKLSDEELILMREMQSNQKAQPSGRWLWIGGTPWINKNQNFSGAYNCTSTNLIDWEA HHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHH FALMMDLAMMGCGTGAIIEPHFINNLPTVINKINIKSVSEVGITPINQRKEKSSLEIKGK HHHHHHHHHHCCCCCCEECCHHHCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEECC DLHIKVGDSRRGWVDSYKYLLEASSNENLEREIDVYIDLEDIRPAGESLKGFGGMANPIK EEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCCEE LKDLYSRVASLLGKAIGRKLSTVECCLLIDEAAVTIVAGNIRRSAGMRQFASDDKEAASA HHHHHHHHHHHHHHHHCCHHCHHHHHEEECCCEEEEEECCHHHHHHHHHHHCCCHHHHHH KENLWSQDENGNWRIDPEKDALRMANHTRVYHTKPTYQTVLDAVTKQFHSGEGAIQFAPE HHHHCCCCCCCCEEECCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEECHH AIARSNADILKDDELRKEFIEIYSEQGKDEARNWINSSYGPFSEEELDHRMSRYGLNPCG HHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH EILGNDFHCNLAEVHLNQIDPGDFEEQKKAFKAAALSVACLLNHEFEVERYRKSREYDPI HHCCCCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCE VGVSFTGLFDFCVHAFGTPWLKWWEAGRPNSEEGKAFKEKEAKFLDSWRKIVKETVWEYC ECEEHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH DKHNLRRPNRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPIALACMDYGYS HHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCE VVPSQSDKDENGCLLDNPFDPRCTEWLVEIPTEVSWANIDGADQIDINNFSALAQFDFYM ECCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCEEECCCCCCEECCCCHHHHHHHHHHH QVQKFYTEHNTSATVEFRENEIEDLAKAIHNAIENNEGYISAALLARFSANATFPRLPFE HHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCC PISKEEYISLQNKVIERKVNNDFFDALNKYDVGELSEAGPAGCDSDKCLLPLAKPKD CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA