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The map label for this gene is xisA [H]

Identifier: 126695888

GI number: 126695888

Start: 479481

End: 480650

Strand: Reverse

Name: xisA [H]

Synonym: P9301_05501

Alternate gene names: 126695888

Gene position: 480650-479481 (Counterclockwise)

Preceding gene: 126695892

Following gene: 126695887

Centisome position: 29.27

GC content: 30.68

Gene sequence:

>1170_bases
ATGAACGTAATTCAGGAAATTAATAATGTCAATGATAAATTTGCTACTCAAGGCAGCAAGCTTAAAATTGAGAAAAGAGG
AGAGAAATTAAATATTCGTGGTTCATTACCCTCCAAAGAAGATAACAATAACTTTAAAATTCAAAGAATATCTCTTGGCT
TAAAGGCTGATATTTCAGGATTAGAGGAAGCTAAAAAAAAATTACAATTAATCAATTTGCAATTGGAATTGAATCAATTT
GATTGGATTAATTGGATAGGCAAACCTTATAAAAAGGAAAAAAAAGATGGTTTTGAATTCCCAAAAAGATTAAATCAATT
TGAGGAATTTTTTTTTAAAGAAAATAAAAGTGATTTTCGAACAAGCACTAGAAAAACTACTTGGAGAAGTTCTTACAAAC
CATATATGAAAAGAATTTTAAATATTTACAATGACTATGAGAATGCAGCTTTAGAAAAAATATTTCAAAAAACACTTGAA
AGTTATAAGGAAGGTACCAGAAGTAGGAAACAATGCGCTACTTCTTTAAGTGTTTTGGCTAAGTTTTTGGACATTAAACT
ACCAGAAGATTGGAAATTAAATTCTAGAGGATATGGTCTGAACAAAGCAGGATTTAGGGATCTTCCTAAAGACGAATTAA
TAGAGAAACTGTGGGAGAGGATACCAAACGAGTCTTGGAAATTTGTTTTTGGTCTGATGGCTACATATGGATTAAGGAAT
CATGAAGTATTTTTTTGTGATTTAAGTTCTCTTACTAATTTTGGGGACAAAATTATAAGAGTTTTGCCTACGACTAAAAC
TGGAGAACATCAAGTTTGGCCATTTCATCCTGAATGGGTGGAAAAGTTCGAATTATCAAAACTTGGGGATAATCCAGAAC
TTTTACCAAACATTAATAAAGACCTTAAAGTTACAACCTTACAAAATATTGGAAAAAAAATTACAGATCAGTTTAAGCGT
TACTCATTGCAAATAAAACCTTATGATCTAAGGCATGCTTGGGCAGTAAGAACAATTTTTTATGATTTACCTGATACGGT
GGCTGCCAGAATGATGGGACATTCGGTTAGTTTACATACTCAAACTTATCATCACTGGATTACAAAAAGAGATCAACAAC
AGGCAGTAAATAATGCACTTTTAAAAGTGAAAAGAGTTAAAAATATTTAA

Upstream 100 bases:

>100_bases
CCTAAATTCATTAGTAAGACGCCTATTTTAACCATTTAAGATTTATGGAGATTGAAAATCAACATTAAAAACGTCATTAT
ATGGTCAATTATATAAGTAA

Downstream 100 bases:

>100_bases
AGATTTATAATAATTAAATAAATTAAGGGTCATATGCAAGAAAAACCTTCATCTTCCGAGAAAATATTTAACCTCGATAA
TCAAGCAAATAAACTTGGAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NifD element site-specific recombinase [H]

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MNVIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLKADISGLEEAKKKLQLINLQLELNQF
DWINWIGKPYKKEKKDGFEFPKRLNQFEEFFFKENKSDFRTSTRKTTWRSSYKPYMKRILNIYNDYENAALEKIFQKTLE
SYKEGTRSRKQCATSLSVLAKFLDIKLPEDWKLNSRGYGLNKAGFRDLPKDELIEKLWERIPNESWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGDNPELLPNINKDLKVTTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLKVKRVKNI

Sequences:

>Translated_389_residues
MNVIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLKADISGLEEAKKKLQLINLQLELNQF
DWINWIGKPYKKEKKDGFEFPKRLNQFEEFFFKENKSDFRTSTRKTTWRSSYKPYMKRILNIYNDYENAALEKIFQKTLE
SYKEGTRSRKQCATSLSVLAKFLDIKLPEDWKLNSRGYGLNKAGFRDLPKDELIEKLWERIPNESWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGDNPELLPNINKDLKVTTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLKVKRVKNI
>Mature_389_residues
MNVIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLKADISGLEEAKKKLQLINLQLELNQF
DWINWIGKPYKKEKKDGFEFPKRLNQFEEFFFKENKSDFRTSTRKTTWRSSYKPYMKRILNIYNDYENAALEKIFQKTLE
SYKEGTRSRKQCATSLSVLAKFLDIKLPEDWKLNSRGYGLNKAGFRDLPKDELIEKLWERIPNESWKFVFGLMATYGLRN
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGDNPELLPNINKDLKVTTLQNIGKKITDQFKR
YSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHTQTYHHWITKRDQQQAVNNALLKVKRVKNI

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 11 kb nifD element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45861; Mature: 45861

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLKADISG
CCHHHHHHCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHH
LEEAKKKLQLINLQLELNQFDWINWIGKPYKKEKKDGFEFPKRLNQFEEFFFKENKSDFR
HHHHHHHHHHHEEEEECCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH
TSTRKTTWRSSYKPYMKRILNIYNDYENAALEKIFQKTLESYKEGTRSRKQCATSLSVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFLDIKLPEDWKLNSRGYGLNKAGFRDLPKDELIEKLWERIPNESWKFVFGLMATYGLRN
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGDNPELLPNINK
CEEEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DLKVTTLQNIGKKITDQFKRYSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CEEEHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALLKVKRVKNI
HHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNVIQEINNVNDKFATQGSKLKIEKRGEKLNIRGSLPSKEDNNNFKIQRISLGLKADISG
CCHHHHHHCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHH
LEEAKKKLQLINLQLELNQFDWINWIGKPYKKEKKDGFEFPKRLNQFEEFFFKENKSDFR
HHHHHHHHHHHEEEEECCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH
TSTRKTTWRSSYKPYMKRILNIYNDYENAALEKIFQKTLESYKEGTRSRKQCATSLSVLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFLDIKLPEDWKLNSRGYGLNKAGFRDLPKDELIEKLWERIPNESWKFVFGLMATYGLRN
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
HEVFFCDLSSLTNFGDKIIRVLPTTKTGEHQVWPFHPEWVEKFELSKLGDNPELLPNINK
CEEEEEEHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
DLKVTTLQNIGKKITDQFKRYSLQIKPYDLRHAWAVRTIFYDLPDTVAARMMGHSVSLHT
CEEEHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEH
QTYHHWITKRDQQQAVNNALLKVKRVKNI
HHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3006922; 11759840; 3144039 [H]