| Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
|---|---|
| Accession | NC_009091 |
| Length | 1,641,879 |
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The map label for this gene is gpmB [H]
Identifier: 126695879
GI number: 126695879
Start: 470036
End: 471364
Strand: Reverse
Name: gpmB [H]
Synonym: P9301_05411
Alternate gene names: 126695879
Gene position: 471364-470036 (Counterclockwise)
Preceding gene: 126695884
Following gene: 126695873
Centisome position: 28.71
GC content: 31.98
Gene sequence:
>1329_bases ATGGCTATACGATTAGTTTTAGTTAGGCATGGACTAAGCAGTTTCAATGCAAAAGGATTAATTCAAGGAAGAACAGACGA TTCATTATTAACTGATGAAGGATACGAACAAGCCCGAAAAGCAGGAAAAGCATTATCAAAAATAAACTTCGATAAAATCT ATTCCTCTCCACTTGTGAGAGCGGCGGAGACTGCAAAAACAATTAAAAAGACTTTCACTAAAGACCAAGATATTGTATTC GATGATAATTTGCTAGAGGTAGATCTTAGTGAATGGTCTGGTCTAAAAATTGATGAAATAAAAAAGAAATTTCCAGAAAT TTACCCTATATGGAAAAGTGATCCGGAAAATCTAATCTTAAAAAGAAAAGACAATAAAACTTATAAACCAATTCAAGAGT TATTTTTTCAAGCAACAAATTTTGTAGAAAATATCTTAAAAATTTATCAAGATAAAGATGGTGCAAATATTTTAGTTGTA GGACATAATGCGATTCTCAGATGTTTAATCCTCTCTTTATTAGGAAAGCCTAAGCAAGGTTTTAGGAAAATAAGATTAGA AAATGCCTCTTTATCTATACTCAATATTTCAAAGGAAGATAACTCTTTTAAGACCCAAATTGAATGCTTAAATCAAACTT CCCATCTGAATAAAAATATTCCGAATCAAATTGGAGATTCCAGAATATTTCTAATAAGGCATGGTGAAACTAACTGGAAC AAAGAAGGTAGATTTCAAGGCCAAATTGATATTCCTTTAAATGAAAACGGGAAAGACCAAGCTAGAAAGACTTTTGAATA TTTGAGAAATATTTCTTTCAATAAGGCATTTTCAAGTTCAATGGAAAGACCTTATGAGACTGCACAAATAATCCTTCAAA ATAGGAAAGATTTAAAAATAGAAAGAATAGATTCACTTGTAGAAATTAGTCATGGATTATGGGAGGGTAAACTGGAAGCA GAAATCAGAGAACAGTGGCCCGTTTTATTAAAAAATTGGCATGATAAACCTGAAAAAGTAATTATGCCTGAAGGTGAATC TATAAAAGATGTATCAGAAAGGTCCGTAGAAGCTTTTGAAAAGATTTGTTTTTCTCAAAAGGATAATGATCTTAGCCTTC TGGTTGCTCATGATGCAGTCAATAAAACTTTAATTTGCAAAATCCTTGGGATTAATTATTCAAATATTTGGATGATAAAA CAGGGTAATGGCGGCATAACTATAATTGACCTTTTTAATGATCCCAATAAGCCTCCTGTAATTAGCGCTCTTAACATTAC AACACACCTAGGGGGAATACTTGATTCAACTGCTTCAGGGGCACTTTAA
Upstream 100 bases:
>100_bases TTGAAACTATACTTAGTTATCATTGAAGTTCCTTATATTTTGTATCTATTTTAATCACGCCATGAGATGATTAAATTATC TTAATCTTCAAATTTATATA
Downstream 100 bases:
>100_bases AATAAGCCTTGTTAAAAATTTATTTTGATGAAGTCAGAGTCAGAAAAAAGGCTTTATTTACTGAAAAAGCCAACTTGATT AAGAGGCCAAAATCTGAAAT
Product: putative alpha-ribazole-5'-P phosphatase
Products: NA
Alternate protein names: Alpha-ribazole-5'-phosphate phosphatase [H]
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MAIRLVLVRHGLSSFNAKGLIQGRTDDSLLTDEGYEQARKAGKALSKINFDKIYSSPLVRAAETAKTIKKTFTKDQDIVF DDNLLEVDLSEWSGLKIDEIKKKFPEIYPIWKSDPENLILKRKDNKTYKPIQELFFQATNFVENILKIYQDKDGANILVV GHNAILRCLILSLLGKPKQGFRKIRLENASLSILNISKEDNSFKTQIECLNQTSHLNKNIPNQIGDSRIFLIRHGETNWN KEGRFQGQIDIPLNENGKDQARKTFEYLRNISFNKAFSSSMERPYETAQIILQNRKDLKIERIDSLVEISHGLWEGKLEA EIREQWPVLLKNWHDKPEKVIMPEGESIKDVSERSVEAFEKICFSQKDNDLSLLVAHDAVNKTLICKILGINYSNIWMIK QGNGGITIIDLFNDPNKPPVISALNITTHLGGILDSTASGAL
Sequences:
>Translated_442_residues MAIRLVLVRHGLSSFNAKGLIQGRTDDSLLTDEGYEQARKAGKALSKINFDKIYSSPLVRAAETAKTIKKTFTKDQDIVF DDNLLEVDLSEWSGLKIDEIKKKFPEIYPIWKSDPENLILKRKDNKTYKPIQELFFQATNFVENILKIYQDKDGANILVV GHNAILRCLILSLLGKPKQGFRKIRLENASLSILNISKEDNSFKTQIECLNQTSHLNKNIPNQIGDSRIFLIRHGETNWN KEGRFQGQIDIPLNENGKDQARKTFEYLRNISFNKAFSSSMERPYETAQIILQNRKDLKIERIDSLVEISHGLWEGKLEA EIREQWPVLLKNWHDKPEKVIMPEGESIKDVSERSVEAFEKICFSQKDNDLSLLVAHDAVNKTLICKILGINYSNIWMIK QGNGGITIIDLFNDPNKPPVISALNITTHLGGILDSTASGAL >Mature_441_residues AIRLVLVRHGLSSFNAKGLIQGRTDDSLLTDEGYEQARKAGKALSKINFDKIYSSPLVRAAETAKTIKKTFTKDQDIVFD DNLLEVDLSEWSGLKIDEIKKKFPEIYPIWKSDPENLILKRKDNKTYKPIQELFFQATNFVENILKIYQDKDGANILVVG HNAILRCLILSLLGKPKQGFRKIRLENASLSILNISKEDNSFKTQIECLNQTSHLNKNIPNQIGDSRIFLIRHGETNWNK EGRFQGQIDIPLNENGKDQARKTFEYLRNISFNKAFSSSMERPYETAQIILQNRKDLKIERIDSLVEISHGLWEGKLEAE IREQWPVLLKNWHDKPEKVIMPEGESIKDVSERSVEAFEKICFSQKDNDLSLLVAHDAVNKTLICKILGINYSNIWMIKQ GNGGITIIDLFNDPNKPPVISALNITTHLGGILDSTASGAL
Specific function: Converts N1-(5-phospho-alpha-D-ribosyl)-5,6- dimethylbenzimidazole into N1-alpha-D-ribosyl-5,6- dimethylbenzimidazole; involved in the assembly of the nucleotide loop of cobalamin [H]
COG id: COG0406
COG function: function code G; Fructose-2,6-bisphosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family [H]
Homologues:
Organism=Homo sapiens, GI9966849, Length=137, Percent_Identity=35.036496350365, Blast_Score=78, Evalue=1e-14, Organism=Escherichia coli, GI1786857, Length=184, Percent_Identity=27.7173913043478, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1790856, Length=167, Percent_Identity=32.9341317365269, Blast_Score=73, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR017578 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =3.1.3.73 [H]
Molecular weight: Translated: 50275; Mature: 50144
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIRLVLVRHGLSSFNAKGLIQGRTDDSLLTDEGYEQARKAGKALSKINFDKIYSSPLVR CEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCHHHH AAETAKTIKKTFTKDQDIVFDDNLLEVDLSEWSGLKIDEIKKKFPEIYPIWKSDPENLIL HHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCHHHHHHHCCCEECCCCCCCCCEEE KRKDNKTYKPIQELFFQATNFVENILKIYQDKDGANILVVGHNAILRCLILSLLGKPKQG EECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCHHH FRKIRLENASLSILNISKEDNSFKTQIECLNQTSHLNKNIPNQIGDSRIFLIRHGETNWN HHEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCEEEEEECCCCCCC KEGRFQGQIDIPLNENGKDQARKTFEYLRNISFNKAFSSSMERPYETAQIILQNRKDLKI CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHH ERIDSLVEISHGLWEGKLEAEIREQWPVLLKNWHDKPEKVIMPEGESIKDVSERSVEAFE HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHH KICFSQKDNDLSLLVAHDAVNKTLICKILGINYSNIWMIKQGNGGITIIDLFNDPNKPPV HHHHCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCE ISALNITTHLGGILDSTASGAL EEEEEHHHHHHHHHHCCCCCCC >Mature Secondary Structure AIRLVLVRHGLSSFNAKGLIQGRTDDSLLTDEGYEQARKAGKALSKINFDKIYSSPLVR EEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHCCHHHH AAETAKTIKKTFTKDQDIVFDDNLLEVDLSEWSGLKIDEIKKKFPEIYPIWKSDPENLIL HHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCCCHHHHHHHCCCEECCCCCCCCCEEE KRKDNKTYKPIQELFFQATNFVENILKIYQDKDGANILVVGHNAILRCLILSLLGKPKQG EECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCHHH FRKIRLENASLSILNISKEDNSFKTQIECLNQTSHLNKNIPNQIGDSRIFLIRHGETNWN HHEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCEEEEEECCCCCCC KEGRFQGQIDIPLNENGKDQARKTFEYLRNISFNKAFSSSMERPYETAQIILQNRKDLKI CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHH ERIDSLVEISHGLWEGKLEAEIREQWPVLLKNWHDKPEKVIMPEGESIKDVSERSVEAFE HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHH KICFSQKDNDLSLLVAHDAVNKTLICKILGINYSNIWMIKQGNGGITIIDLFNDPNKPPV HHHHCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCE ISALNITTHLGGILDSTASGAL EEEEEHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]