| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is dan [H]
Identifier: 126454470
GI number: 126454470
Start: 648076
End: 649557
Strand: Direct
Name: dan [H]
Synonym: BURPS1106A_0674
Alternate gene names: 126454470
Gene position: 648076-649557 (Clockwise)
Preceding gene: 126454355
Following gene: 126453160
Centisome position: 16.25
GC content: 72.0
Gene sequence:
>1482_bases ATGCACTCGCATCCCGAAGTGGCCGATACGCTGATCGTCGGCGCGCAGTTGTACGACGGCACGGGCGCGCCGAGCGTCGA GCGCGACGTCGCGATACGCGGCGACCGCATCGTCGCGATCGGCAATCTGACGAACTGGCTTGCGGAGCAGGTGGTCGAGG CGAACGGCCGCGCGCTCGCGCCCGGCTTCGTCGACGTGCACACGCACGACGACACGCACGTGATCGACGCGCCGCAGATG CTGCCGAAGATCTCGCAGGGCGTGACGACGGTGATCGTCGGCAACTGCGGGATCAGCGCGTCGCCCGTCGCGCTCAAGGG CGATCCGCCCGATCCGATGAACCTGCTCGGCGCGCGCGCGGCGTTTCGCTATCCGACGTTCGCCGCCTATGTCGACGCGC TCGGCGCGGCGAAGCCGGCCGTCAACGTCGCGGCGCTCGTCGGCCACACCGCGCTGCGCAGCAACCAGATGGACCGGCTC GACCGCGCGGCGACCGGCGCCGAAATCGCGGCGATGCGCGCGCAGCTCGAGGAGGCGCTCGCGCACGGCGCGCTCGGTCT TTCCAGCGGCCTCGCGTACGGCTCCGCGTTCGCCGCGCCGACCGAGGAGGTGATGGCGCTCGCCGAGCCGCTCGCGAACG CGGGCGCCGTCTACACGACGCACATGCGCACCGAGTTCGATGCGATCCTCGAGGCGATGGACGAGGCCTACCGCGTCGGC CGGCATGCACGCGTGCCCGTCGTGATCTCGCATCTGAAGTGCGCGGGGCCGTCGAACTGGGGGCGCAGCGCCGAAGTGCT CGCGTCGCTCGAGCGCGCGCGGCGCATCCAGCCCGTCGGCTGCGACTGCTATCCGTACAGCCGCAGCTCGTCGACGCTCG ACATCAAGCAGGCGACGGGCGACATCGACATCACGATCACGTGGTCCGATCCGCATCCGGAAATGGCGGGCAAGCTGCTG AGGACGATCGCCGCCGAGTGGCGCGTGTCCGAGCAGGACGCGGCGCGCCGGCTGCAGCCGGCGGGCGCCGTGTATCACAA CATGTCGGAGGACGACGTGCGCCGGATCCTGTCGCACCCGGCGACGATGGTGGGCTCCGACGGCCTGCCGAACGATCCGC TGCCGCATCCGCGCCTCTGGGGCGCGTTTCCGCGCGTGCTCGGCTACTACGCGCGCGACGAGCGGCTGATTTCGCTCGAG GACGCGGTGCGCAAGATGACTGCGCTGTCCGCCCGGCGCTTCGGGCTCGCGCGGCGCGGCGAGGTGCGGGTCGGCTATCA CGCGGATCTCGTGCTGTTCGATGCGGCGCGCGTGCGCGACGCGGCGACGTTCGAGCAGCCGCAGCAGCCCGCGCACGGGA TCGAGGCGGTATGGGTGAACGGCGCGCTGTCTTACCGCGACGGTGCGCCCACGGGCGTGCGCGCGGGCCGCTTCGTCGCG CGCGGCGAACGCGCGCCGGCGACGCCGGGCGACGCGTTCTGA
Upstream 100 bases:
>100_bases CTGCGCCTGGGCGACGATTGCCGCGAGCTGCTGCGCCGGATGAAGCACGCGCTCGACATGCACCGCGGCGGCGGCGAGCG CCAACCGTTAGGAGACTGAC
Downstream 100 bases:
>100_bases GCACGCCCGCTTGAAGGATTCGGCGCGCGCGATCGAACGGATGCGCGGGCCGGCGATCGAACGTCGCGCGCCGTCGCGCA TCGCGGGCGGCGCGTGTTGT
Product: N-acyl-D-aspartate deacylase
Products: NA
Alternate protein names: N-acyl-D-amino-acid deacylase [H]
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MHSHPEVADTLIVGAQLYDGTGAPSVERDVAIRGDRIVAIGNLTNWLAEQVVEANGRALAPGFVDVHTHDDTHVIDAPQM LPKISQGVTTVIVGNCGISASPVALKGDPPDPMNLLGARAAFRYPTFAAYVDALGAAKPAVNVAALVGHTALRSNQMDRL DRAATGAEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPTEEVMALAEPLANAGAVYTTHMRTEFDAILEAMDEAYRVG RHARVPVVISHLKCAGPSNWGRSAEVLASLERARRIQPVGCDCYPYSRSSSTLDIKQATGDIDITITWSDPHPEMAGKLL RTIAAEWRVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMVGSDGLPNDPLPHPRLWGAFPRVLGYYARDERLISLE DAVRKMTALSARRFGLARRGEVRVGYHADLVLFDAARVRDAATFEQPQQPAHGIEAVWVNGALSYRDGAPTGVRAGRFVA RGERAPATPGDAF
Sequences:
>Translated_493_residues MHSHPEVADTLIVGAQLYDGTGAPSVERDVAIRGDRIVAIGNLTNWLAEQVVEANGRALAPGFVDVHTHDDTHVIDAPQM LPKISQGVTTVIVGNCGISASPVALKGDPPDPMNLLGARAAFRYPTFAAYVDALGAAKPAVNVAALVGHTALRSNQMDRL DRAATGAEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPTEEVMALAEPLANAGAVYTTHMRTEFDAILEAMDEAYRVG RHARVPVVISHLKCAGPSNWGRSAEVLASLERARRIQPVGCDCYPYSRSSSTLDIKQATGDIDITITWSDPHPEMAGKLL RTIAAEWRVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMVGSDGLPNDPLPHPRLWGAFPRVLGYYARDERLISLE DAVRKMTALSARRFGLARRGEVRVGYHADLVLFDAARVRDAATFEQPQQPAHGIEAVWVNGALSYRDGAPTGVRAGRFVA RGERAPATPGDAF >Mature_493_residues MHSHPEVADTLIVGAQLYDGTGAPSVERDVAIRGDRIVAIGNLTNWLAEQVVEANGRALAPGFVDVHTHDDTHVIDAPQM LPKISQGVTTVIVGNCGISASPVALKGDPPDPMNLLGARAAFRYPTFAAYVDALGAAKPAVNVAALVGHTALRSNQMDRL DRAATGAEIAAMRAQLEEALAHGALGLSSGLAYGSAFAAPTEEVMALAEPLANAGAVYTTHMRTEFDAILEAMDEAYRVG RHARVPVVISHLKCAGPSNWGRSAEVLASLERARRIQPVGCDCYPYSRSSSTLDIKQATGDIDITITWSDPHPEMAGKLL RTIAAEWRVSEQDAARRLQPAGAVYHNMSEDDVRRILSHPATMVGSDGLPNDPLPHPRLWGAFPRVLGYYARDERLISLE DAVRKMTALSARRFGLARRGEVRVGYHADLVLFDAARVRDAATFEQPQQPAHGIEAVWVNGALSYRDGAPTGVRAGRFVA RGERAPATPGDAF
Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]
COG id: COG3653
COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR023100 - InterPro: IPR012855 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]
EC number: =3.5.1.81 [H]
Molecular weight: Translated: 52783; Mature: 52783
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSHPEVADTLIVGAQLYDGTGAPSVERDVAIRGDRIVAIGNLTNWLAEQVVEANGRALA CCCCCCHHHHHEEECEEECCCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHCCCCEEC PGFVDVHTHDDTHVIDAPQMLPKISQGVTTVIVGNCGISASPVALKGDPPDPMNLLGARA CCEEEEECCCCCEEECCHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHHHHH AFRYPTFAAYVDALGAAKPAVNVAALVGHTALRSNQMDRLDRAATGAEIAAMRAQLEEAL HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH AHGALGLSSGLAYGSAFAAPTEEVMALAEPLANAGAVYTTHMRTEFDAILEAMDEAYRVG HHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCC RHARVPVVISHLKCAGPSNWGRSAEVLASLERARRIQPVGCDCYPYSRSSSTLDIKQATG CCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC DIDITITWSDPHPEMAGKLLRTIAAEWRVSEQDAARRLQPAGAVYHNMSEDDVRRILSHP CEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCC ATMVGSDGLPNDPLPHPRLWGAFPRVLGYYARDERLISLEDAVRKMTALSARRFGLARRG HHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCC EVRVGYHADLVLFDAARVRDAATFEQPQQPAHGIEAVWVNGALSYRDGAPTGVRAGRFVA CEEECEECCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCEE RGERAPATPGDAF CCCCCCCCCCCCC >Mature Secondary Structure MHSHPEVADTLIVGAQLYDGTGAPSVERDVAIRGDRIVAIGNLTNWLAEQVVEANGRALA CCCCCCHHHHHEEECEEECCCCCCCCCCCEEECCCEEEEECCHHHHHHHHHHHCCCCEEC PGFVDVHTHDDTHVIDAPQMLPKISQGVTTVIVGNCGISASPVALKGDPPDPMNLLGARA CCEEEEECCCCCEEECCHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHHHHHH AFRYPTFAAYVDALGAAKPAVNVAALVGHTALRSNQMDRLDRAATGAEIAAMRAQLEEAL HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHH AHGALGLSSGLAYGSAFAAPTEEVMALAEPLANAGAVYTTHMRTEFDAILEAMDEAYRVG HHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCC RHARVPVVISHLKCAGPSNWGRSAEVLASLERARRIQPVGCDCYPYSRSSSTLDIKQATG CCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC DIDITITWSDPHPEMAGKLLRTIAAEWRVSEQDAARRLQPAGAVYHNMSEDDVRRILSHP CEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHCC ATMVGSDGLPNDPLPHPRLWGAFPRVLGYYARDERLISLEDAVRKMTALSARRFGLARRG HHEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCC EVRVGYHADLVLFDAARVRDAATFEQPQQPAHGIEAVWVNGALSYRDGAPTGVRAGRFVA CEEECEECCEEEEEHHHHHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCEE RGERAPATPGDAF CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8541651 [H]