Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is prpR [H]
Identifier: 126447592
GI number: 126447592
Start: 2075460
End: 2077544
Strand: Direct
Name: prpR [H]
Synonym: BMA10247_A2144
Alternate gene names: 126447592
Gene position: 2075460-2077544 (Clockwise)
Preceding gene: 126446989
Following gene: 126447947
Centisome position: 88.22
GC content: 73.86
Gene sequence:
>2085_bases ATGAGCACCCTACCCGAAACCGGCGTGCGGCCGCGCGTCTGGGCGGTCGGCATCAGCCGGCTGCGCGCGCTCTTTCGCGA CATCGCCGACGAATACGAAGAACGCGCCGATCTGCGGATCGTCGCGCGCGGCTACGAGGAGGCGATCACGGCGCTCGCGA CGGCGGGCGCCGAGCGCCCCGACGCGATCGTCGCCGCCGGCTCGAACGGCACCTATCTGAAGGCGCGCGTGCGCGTGCCC GTCGTGCTCGTCAATCCGACCGGCTTCGACGTGATGCACGCGCTCGCGCGGGCGCGGCGCGATGCGGGCCGGATCGCGCT CGTCAGCTACGGCGAGACGCCGCCCGAGGTGCGCAGTTTCGCGGCCGCGTACGGGCTCGACGTCGTGTTCGCGTCGTACC AGAGCGCGCAGGAGGCGGACACGCGCGTGCTCGAGATGCGCGAGCGCGGCATCGAGACCGTCGTCGGGCCGGGGCTCGTC ACCGATCTCGCGGCGAACGCCGGGATGGGCGCGGTGTTCGTCTATTCGCACGCGTCGGTGCGCGCCGCCGTGAACACCGC GCTCGAGGTCGCGCACGCGACGCACGCGGAAGCGCTGCGCCGCGAGCGCCTCGACAACCTGCTGCAGCACCTGCGCGACG GCGTGGTGGCGCTCGACCGCGAGGGCCGCATCGAGGCGATCAACGAGCGGCTCGCGCTCGCGCTCGGCGTATCGCCGTCG GCCGCGGTGGGCCGCGCGCTGGACGATCTGACGCCCGAGCTGCGCACGCTGCGCGCGGCCGACGGCGACACGCTCGCGAC GGTGCGCGGCGTGCGCTACGTCGTGCATCGCGGGCCGCTCGCCGCGAGCGGCGGCGCGCCCGGCAGCGTGCTGACGTTCC AAGAATCGCGTGCGGTCGAGCGGCTCGACCGCACGCTGCGCTCGCATCAGCACGCGCAGCAGTTCACCGCGCGCTACCGG CTCGACGACATCGTCGGCACGACGCCCGCGATCGCGTACGCGCGCGACCTCGCGCGGCGCTACGCGAAATCGGACGCGAC CGTGCTGATCCTCGGCGAGAGCGGCACCGGCAAGGAGATGATCGCGCAGAGCCTGCACGCGCTGTCCGCGCGCCGCAAGT ATCCGTTCGTCGCGGTCAACTGCGGCGCGTTTCCGGAATCGCTGCTCGAGAGCGAGCTGTTCGGCTACGAGGAAGGCGCG TTCACCGGCGCGCGGCGCGGCGGCAAGGCGGGGCTGTTCGAGGCCGCGCACCGCGGCACGCTGTTTCTCGACGAGATCGG CGAAATGCCCCCGTCGCTGCAAAGCCGGCTGCTGCGCGTGCTGCAGGAGCGCGAGGTCGTGCGCGTCGGCTCGACCGAGC CGGTTCCGGTCGACATCCGCGTCGTCGCCGCGACGCACCGGCCGCTCTTCGCCGCCGTCGAGGCGGGCACGTTCCGCGCG GATCTCTATTACCGGCTGAACATCCTGAACATCGGGCTGCCGCCGCTGCGCGAGCGCGCGGCCGACATTCCGGCGCTCGC CGCGACGCTGCTCGCGCAGGCCGCGCGCCGCGAGCCGCGGCTCGCCGAGCGGCTGCGCGACGCCAACGATGCGGCGCGCG CGCTCGACGCGGCGAACGCCGCGCTCGCCCGCTATCGATGGCCGGGCAACGTGCGCGAATTGCAGAACGTGATCGAGCGC ATCGCCGTCGAGCTCGCCGACGCGGGCGAGCGCGGCGATGCGGCCGTGAGCGCCGACACGCTGCGCGCGATCGCGCCCGA GGTGTTCGCGCTCGATACGCTCGGCGGGTTCGGCTCGTTCGGCTCGGCGGCGGGCGGCGGGCACGGCGACGCGAGCGGCG GAGATATCGATGCCGATGCCGACGCGCGACGCCCGACGCTCGTGCAGCGCCGCCGGCGCGCGGAAGCCGACGAGATTCGC GCGGCGCTCGACGCATGCGGCGGCGACCGCGACCGCGCGTGCGCGAGGCTCGGCATCAGCAAGACGACGCTGTGGCGCAA GCTCGCGGCGAGCGAAGGGAAAGCGCGAAGCAATAAGCGCGGCGGCGGCCACGGCGGCGACAACGACGAAGGCGCGGGTG CGTGA
Upstream 100 bases:
>100_bases ATATTGAAATTGAAATTCCATAATTGAAATCCATGCGCGATAATGCGGTTCATCCCCTTTCTTCATCCGGGCGCGGCTCG CGCCGCGCCCTCGGTCCAGT
Downstream 100 bases:
>100_bases CCTCGCGCGGCAAGGTCGCGGTTCCCGATTCCCGGTTTCCGTTCGCCGACTGCCGGCACGCGAGCATTCGAGCGTCGTGC GGGCTTCGCTTCGCGCGCGC
Product: propionate catabolism operon regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 694; Mature: 693
Protein sequence:
>694_residues MSTLPETGVRPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAITALATAGAERPDAIVAAGSNGTYLKARVRVP VVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDVVFASYQSAQEADTRVLEMRERGIETVVGPGLV TDLAANAGMGAVFVYSHASVRAAVNTALEVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPS AAVGRALDDLTPELRTLRAADGDTLATVRGVRYVVHRGPLAASGGAPGSVLTFQESRAVERLDRTLRSHQHAQQFTARYR LDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQSLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGA FTGARRGGKAGLFEAAHRGTLFLDEIGEMPPSLQSRLLRVLQEREVVRVGSTEPVPVDIRVVAATHRPLFAAVEAGTFRA DLYYRLNILNIGLPPLRERAADIPALAATLLAQAARREPRLAERLRDANDAARALDAANAALARYRWPGNVRELQNVIER IAVELADAGERGDAAVSADTLRAIAPEVFALDTLGGFGSFGSAAGGGHGDASGGDIDADADARRPTLVQRRRRAEADEIR AALDACGGDRDRACARLGISKTTLWRKLAASEGKARSNKRGGGHGGDNDEGAGA
Sequences:
>Translated_694_residues MSTLPETGVRPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAITALATAGAERPDAIVAAGSNGTYLKARVRVP VVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDVVFASYQSAQEADTRVLEMRERGIETVVGPGLV TDLAANAGMGAVFVYSHASVRAAVNTALEVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPS AAVGRALDDLTPELRTLRAADGDTLATVRGVRYVVHRGPLAASGGAPGSVLTFQESRAVERLDRTLRSHQHAQQFTARYR LDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQSLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGA FTGARRGGKAGLFEAAHRGTLFLDEIGEMPPSLQSRLLRVLQEREVVRVGSTEPVPVDIRVVAATHRPLFAAVEAGTFRA DLYYRLNILNIGLPPLRERAADIPALAATLLAQAARREPRLAERLRDANDAARALDAANAALARYRWPGNVRELQNVIER IAVELADAGERGDAAVSADTLRAIAPEVFALDTLGGFGSFGSAAGGGHGDASGGDIDADADARRPTLVQRRRRAEADEIR AALDACGGDRDRACARLGISKTTLWRKLAASEGKARSNKRGGGHGGDNDEGAGA >Mature_693_residues STLPETGVRPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAITALATAGAERPDAIVAAGSNGTYLKARVRVPV VLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSFAAAYGLDVVFASYQSAQEADTRVLEMRERGIETVVGPGLVT DLAANAGMGAVFVYSHASVRAAVNTALEVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPSA AVGRALDDLTPELRTLRAADGDTLATVRGVRYVVHRGPLAASGGAPGSVLTFQESRAVERLDRTLRSHQHAQQFTARYRL DDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEMIAQSLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAF TGARRGGKAGLFEAAHRGTLFLDEIGEMPPSLQSRLLRVLQEREVVRVGSTEPVPVDIRVVAATHRPLFAAVEAGTFRAD LYYRLNILNIGLPPLRERAADIPALAATLLAQAARREPRLAERLRDANDAARALDAANAALARYRWPGNVRELQNVIERI AVELADAGERGDAAVSADTLRAIAPEVFALDTLGGFGSFGSAAGGGHGDASGGDIDADADARRPTLVQRRRRAEADEIRA ALDACGGDRDRACARLGISKTTLWRKLAASEGKARSNKRGGGHGGDNDEGAGA
Specific function: Involved In The Transcriptional Regulation Of The Propionate Catabolism Operon. [C]
COG id: COG3829
COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 sigma-54 factor interaction domain [H]
Homologues:
Organism=Escherichia coli, GI1786524, Length=391, Percent_Identity=43.2225063938619, Blast_Score=276, Evalue=3e-75, Organism=Escherichia coli, GI1788550, Length=379, Percent_Identity=41.1609498680739, Blast_Score=241, Evalue=8e-65, Organism=Escherichia coli, GI1789233, Length=383, Percent_Identity=35.7702349869452, Blast_Score=239, Evalue=6e-64, Organism=Escherichia coli, GI87082117, Length=270, Percent_Identity=48.1481481481481, Blast_Score=238, Evalue=8e-64, Organism=Escherichia coli, GI1790437, Length=350, Percent_Identity=43.7142857142857, Blast_Score=236, Evalue=4e-63, Organism=Escherichia coli, GI1788905, Length=362, Percent_Identity=40.8839779005525, Blast_Score=231, Evalue=1e-61, Organism=Escherichia coli, GI1790299, Length=275, Percent_Identity=46.5454545454545, Blast_Score=221, Evalue=2e-58, Organism=Escherichia coli, GI1789087, Length=281, Percent_Identity=45.5516014234875, Blast_Score=219, Evalue=5e-58, Organism=Escherichia coli, GI87082152, Length=253, Percent_Identity=45.4545454545455, Blast_Score=196, Evalue=3e-51, Organism=Escherichia coli, GI87081872, Length=249, Percent_Identity=44.9799196787149, Blast_Score=192, Evalue=4e-50, Organism=Escherichia coli, GI1787583, Length=306, Percent_Identity=36.9281045751634, Blast_Score=187, Evalue=2e-48, Organism=Escherichia coli, GI87081858, Length=476, Percent_Identity=28.5714285714286, Blast_Score=153, Evalue=3e-38, Organism=Escherichia coli, GI1789828, Length=224, Percent_Identity=37.5, Blast_Score=120, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR020441 - InterPro: IPR009057 - InterPro: IPR002197 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR002078 [H]
Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]
EC number: NA
Molecular weight: Translated: 74203; Mature: 74071
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLPETGVRPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAITALATAGAERP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCCCCC DAIVAAGSNGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSF CEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH AAAYGLDVVFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHCCCCCEEEEEECHHH RAAVNTALEVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHEEEECCCCH AAVGRALDDLTPELRTLRAADGDTLATVRGVRYVVHRGPLAASGGAPGSVLTFQESRAVE HHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHH RLDRTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEM HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH IAQSLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGT HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC LFLDEIGEMPPSLQSRLLRVLQEREVVRVGSTEPVPVDIRVVAATHRPLFAAVEAGTFRA EEHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEEEECCCCEEEEECCCCEEE DLYYRLNILNIGLPPLRERAADIPALAATLLAQAARREPRLAERLRDANDAARALDAANA EEEEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHH ALARYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFALDTLGGFGSF HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHEECCCCCCCCC GSAAGGGHGDASGGDIDADADARRPTLVQRRRRAEADEIRAALDACGGDRDRACARLGIS CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCH KTTLWRKLAASEGKARSNKRGGGHGGDNDEGAGA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STLPETGVRPRVWAVGISRLRALFRDIADEYEERADLRIVARGYEEAITALATAGAERP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHCCCCCC DAIVAAGSNGTYLKARVRVPVVLVNPTGFDVMHALARARRDAGRIALVSYGETPPEVRSF CEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH AAAYGLDVVFASYQSAQEADTRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHCCCCCEEEEEECHHH RAAVNTALEVAHATHAEALRRERLDNLLQHLRDGVVALDREGRIEAINERLALALGVSPS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHEEEECCCCH AAVGRALDDLTPELRTLRAADGDTLATVRGVRYVVHRGPLAASGGAPGSVLTFQESRAVE HHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHH RLDRTLRSHQHAQQFTARYRLDDIVGTTPAIAYARDLARRYAKSDATVLILGESGTGKEM HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH IAQSLHALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGARRGGKAGLFEAAHRGT HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC LFLDEIGEMPPSLQSRLLRVLQEREVVRVGSTEPVPVDIRVVAATHRPLFAAVEAGTFRA EEHHHHCCCCHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEEEECCCCEEEEECCCCEEE DLYYRLNILNIGLPPLRERAADIPALAATLLAQAARREPRLAERLRDANDAARALDAANA EEEEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHH ALARYRWPGNVRELQNVIERIAVELADAGERGDAAVSADTLRAIAPEVFALDTLGGFGSF HHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHEECCCCCCCCC GSAAGGGHGDASGGDIDADADARRPTLVQRRRRAEADEIRAALDACGGDRDRACARLGIS CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCH KTTLWRKLAASEGKARSNKRGGGHGGDNDEGAGA HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA