Definition Burkholderia mallei NCTC 10247 chromosome II, complete genome.
Accession NC_009079
Length 2,352,693

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The map label for this gene is 126447546

Identifier: 126447546

GI number: 126447546

Start: 1174662

End: 1176359

Strand: Direct

Name: 126447546

Synonym: BMA10247_A1206

Alternate gene names: NA

Gene position: 1174662-1176359 (Clockwise)

Preceding gene: 126446144

Following gene: 126446922

Centisome position: 49.93

GC content: 70.2

Gene sequence:

>1698_bases
ATGATCACTCACCGCGCACCGATCAGCGGGATTGCCGCGCACCGCGACCAGTACGTCCTGACGGCCGGTTACGACAACCA
GGTCATCCTGTGGGACGCGAAGACCCAGCGTCCGCTCGCCCGCGCGATGCACGACCACCTCGCGAACCAGGGCGCGTTCT
CGCCCGACGGCGCGTACGTCGTCACGTCGTCGTCCGATTACAGCGCCCGCCTCTGGACCGTGCCCGATCTGCGGCTCGTC
GCCGTGTTCGCCGATCAGGAGGACGACGTCGAGATGAGCGTGTTCCATCCGGACAAGCCGCTCGTCGCGACCGCGTCGCG
CGATCACCGCGTGCGCGTCTACGATTTCGGCGGCAAGCTGCTGCACACGTTCAGCGGCCATACGGCCGACGTGATTTCCG
TCGAATGGATGCGCGGCGCCGACGAGATCGTCTCGTCGAGCGACGACGGCACGATCAAGCGCTGGTCGCTCGCGAACAAC
GGCCTCGTCGCCGACATCGATCTCGACGGCATCGAGACCGACACGATCGCGATCGCCGCCGACGGGCGCATTTTCGCGGG
CAACGACGAGGGCGAGATCATCTCGATCGGCGTCGACGGCGCGCGCGCGACGATCGCCGCGCACGACGCGGGCGTGAAGC
GCCTCGTGCTCGACGGCGAGCGCGGCCTGCTCGTGTCGCTGTCGTACGACCGCACGATGCGGCTCTGGAAGGTGGGCGCG
GCGGGCGAGCCGCGGGCGCTCGGCGGCGCGGCGCTGCCGCCCGAGGTGTGGCCGCGCTCGTGCTCGTTCGAGGGCGACGA
GCACATCGTGTTCTCGACGTTCCATTCGAGCTACCGCCGCTACAACTGGAAGACCGAGCGCTGGGACGCGGCCGAGCTGC
CGCCGACGCACGGCGTGAACGCGGTGCAGCCCGTCGACGGCCATCTGTGGACGATCGGCGACGCGGGCATCGTGCGGGTC
GACCAGCGCGAGCATGCGCGCACGGGCAGCCTGTGCAACTTCCTCGCGCCGGCGGGCGAGCTGATCCTGACGGGCGGCCA
GCTCGGCAAGGTATTCGACGCGCGCAGCGGCCGCGAGCTGCATCAGCACCGCTCGCCGCTGAACTGCGGCGTGGCGTTCG
CGCGCGACGGCGCGGCGCATGCGGTGATCGGCACGTATACGGGCGAAGGCATCGTGCTGCGGATCGACGGCACGCGGGCG
ACGCACGTGGCCGACCTGCCGCTGCACGCGAACGCCGTCAAGGGCATCGCGATCTCGGGCGATCTGATCTTCTCGGTCGC
GGCCGACGCGTCGGCCACCTGGTATCGCGCGTCGACGCTCGAGCCGGCGTTCGAGCTCAAGCGCGCGCACGACAAGATCG
CGAACGGCTGCGCGGGCCTCGGCGACGGCTACTTCGCGTCGGTGAGCCGCGATCTGAAGCTGCGGATCTGGTCGCCGGAC
TCTCACGCGGAGGTGATCGCGACACCCCACACGCATTCGATCAAGTGCGTCGCGGCGAGCGCCGACGGCCGCTATGTCGC
CACCGGCAGCTACAACGGCCGCGTCGCCGTCTACGACCGCGTCGAGACGCGCTGGGCGCTCGACGCGCGCGTGACGACGG
CGGGCGTATCGTCGCTCGCGTACGATCCGGCCGCGCGCGCGTTCCTCGCGAGCTCGTACGACGGCAACGTATACCGCATT
CCGCTGGAGCGCGCATGA

Upstream 100 bases:

>100_bases
TGCTGCAGACGGGCGTGTTCGTCAACACCACGAACCACGGCTACCTGCGCGCGAAGATCGATCACCACCGCCACGCCATC
AACCTCAGCCAGGAACTGCA

Downstream 100 bases:

>100_bases
GCGCCGCCGAACCGCACTACATCGACGCGCAACGCACGATCGCGCCCGTCGACGCGCCGCTCGCGGCGCCGCACGAATAC
GCGGCGGTGCTGCGCTCGGA

Product: WD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYVVTSSSDYSARLWTVPDLRLV
AVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKLLHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANN
GLVADIDLDGIETDTIAIAADGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA
AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVNAVQPVDGHLWTIGDAGIVRV
DQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGRELHQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRA
THVADLPLHANAVKGIAISGDLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD
SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLAYDPAARAFLASSYDGNVYRI
PLERA

Sequences:

>Translated_565_residues
MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYVVTSSSDYSARLWTVPDLRLV
AVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKLLHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANN
GLVADIDLDGIETDTIAIAADGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA
AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVNAVQPVDGHLWTIGDAGIVRV
DQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGRELHQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRA
THVADLPLHANAVKGIAISGDLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD
SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLAYDPAARAFLASSYDGNVYRI
PLERA
>Mature_565_residues
MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYVVTSSSDYSARLWTVPDLRLV
AVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKLLHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANN
GLVADIDLDGIETDTIAIAADGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA
AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVNAVQPVDGHLWTIGDAGIVRV
DQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGRELHQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRA
THVADLPLHANAVKGIAISGDLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD
SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLAYDPAARAFLASSYDGNVYRI
PLERA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 WD repeats [H]

Homologues:

Organism=Homo sapiens, GI19913369, Length=146, Percent_Identity=32.8767123287671, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI26665869, Length=187, Percent_Identity=26.7379679144385, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI21071067, Length=189, Percent_Identity=30.1587301587302, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI32189425, Length=156, Percent_Identity=28.2051282051282, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI83779014, Length=183, Percent_Identity=27.3224043715847, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI113865883, Length=278, Percent_Identity=24.1007194244604, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI102470001, Length=254, Percent_Identity=25.5905511811024, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI239787760, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI239787754, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI239787764, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533709, Length=199, Percent_Identity=30.6532663316583, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17505895, Length=233, Percent_Identity=24.4635193133047, Blast_Score=76, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17540286, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17554220, Length=267, Percent_Identity=25.4681647940075, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17510485, Length=235, Percent_Identity=22.5531914893617, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17563260, Length=192, Percent_Identity=22.9166666666667, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71995913, Length=192, Percent_Identity=22.9166666666667, Blast_Score=66, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6319675, Length=144, Percent_Identity=34.0277777777778, Blast_Score=78, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6319916, Length=144, Percent_Identity=29.8611111111111, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320056, Length=239, Percent_Identity=25.9414225941423, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6323763, Length=223, Percent_Identity=26.0089686098655, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24663767, Length=241, Percent_Identity=24.896265560166, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17136870, Length=136, Percent_Identity=33.0882352941176, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649265, Length=143, Percent_Identity=32.1678321678322, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17864464, Length=187, Percent_Identity=26.2032085561497, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18859793, Length=248, Percent_Identity=24.1935483870968, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19922278, Length=262, Percent_Identity=25.5725190839695, Blast_Score=67, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020472
- InterPro:   IPR011600
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 60980; Mature: 60980

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYV
CCCCCCCCCCHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE
VTSSSDYSARLWTVPDLRLVAVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKL
EECCCCCCEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCEE
LHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANNGLVADIDLDGIETDTIAIAA
EEECCCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEE
DGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA
CCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECC
AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVN
CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCC
AVQPVDGHLWTIGDAGIVRVDQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGREL
CCCCCCCCEEEECCCCEEEECCHHCCCCCCHHHHHCCCCEEEEECCCCCCEECCCCCHHH
HQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRATHVADLPLHANAVKGIAISG
HHCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEC
DLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD
CEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCC
SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLA
CCCEEEECCCCCEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEEEEECCHHHHC
YDPAARAFLASSYDGNVYRIPLERA
CCHHHHHHEEECCCCCEEEEEECCC
>Mature Secondary Structure
MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYV
CCCCCCCCCCHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE
VTSSSDYSARLWTVPDLRLVAVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKL
EECCCCCCEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCEE
LHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANNGLVADIDLDGIETDTIAIAA
EEECCCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEE
DGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA
CCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECC
AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVN
CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCC
AVQPVDGHLWTIGDAGIVRVDQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGREL
CCCCCCCCEEEECCCCEEEECCHHCCCCCCHHHHHCCCCEEEEECCCCCCEECCCCCHHH
HQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRATHVADLPLHANAVKGIAISG
HHCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEC
DLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD
CEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCC
SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLA
CCCEEEECCCCCEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEEEEECCHHHHC
YDPAARAFLASSYDGNVYRIPLERA
CCHHHHHHEEECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]