Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is 126447546
Identifier: 126447546
GI number: 126447546
Start: 1174662
End: 1176359
Strand: Direct
Name: 126447546
Synonym: BMA10247_A1206
Alternate gene names: NA
Gene position: 1174662-1176359 (Clockwise)
Preceding gene: 126446144
Following gene: 126446922
Centisome position: 49.93
GC content: 70.2
Gene sequence:
>1698_bases ATGATCACTCACCGCGCACCGATCAGCGGGATTGCCGCGCACCGCGACCAGTACGTCCTGACGGCCGGTTACGACAACCA GGTCATCCTGTGGGACGCGAAGACCCAGCGTCCGCTCGCCCGCGCGATGCACGACCACCTCGCGAACCAGGGCGCGTTCT CGCCCGACGGCGCGTACGTCGTCACGTCGTCGTCCGATTACAGCGCCCGCCTCTGGACCGTGCCCGATCTGCGGCTCGTC GCCGTGTTCGCCGATCAGGAGGACGACGTCGAGATGAGCGTGTTCCATCCGGACAAGCCGCTCGTCGCGACCGCGTCGCG CGATCACCGCGTGCGCGTCTACGATTTCGGCGGCAAGCTGCTGCACACGTTCAGCGGCCATACGGCCGACGTGATTTCCG TCGAATGGATGCGCGGCGCCGACGAGATCGTCTCGTCGAGCGACGACGGCACGATCAAGCGCTGGTCGCTCGCGAACAAC GGCCTCGTCGCCGACATCGATCTCGACGGCATCGAGACCGACACGATCGCGATCGCCGCCGACGGGCGCATTTTCGCGGG CAACGACGAGGGCGAGATCATCTCGATCGGCGTCGACGGCGCGCGCGCGACGATCGCCGCGCACGACGCGGGCGTGAAGC GCCTCGTGCTCGACGGCGAGCGCGGCCTGCTCGTGTCGCTGTCGTACGACCGCACGATGCGGCTCTGGAAGGTGGGCGCG GCGGGCGAGCCGCGGGCGCTCGGCGGCGCGGCGCTGCCGCCCGAGGTGTGGCCGCGCTCGTGCTCGTTCGAGGGCGACGA GCACATCGTGTTCTCGACGTTCCATTCGAGCTACCGCCGCTACAACTGGAAGACCGAGCGCTGGGACGCGGCCGAGCTGC CGCCGACGCACGGCGTGAACGCGGTGCAGCCCGTCGACGGCCATCTGTGGACGATCGGCGACGCGGGCATCGTGCGGGTC GACCAGCGCGAGCATGCGCGCACGGGCAGCCTGTGCAACTTCCTCGCGCCGGCGGGCGAGCTGATCCTGACGGGCGGCCA GCTCGGCAAGGTATTCGACGCGCGCAGCGGCCGCGAGCTGCATCAGCACCGCTCGCCGCTGAACTGCGGCGTGGCGTTCG CGCGCGACGGCGCGGCGCATGCGGTGATCGGCACGTATACGGGCGAAGGCATCGTGCTGCGGATCGACGGCACGCGGGCG ACGCACGTGGCCGACCTGCCGCTGCACGCGAACGCCGTCAAGGGCATCGCGATCTCGGGCGATCTGATCTTCTCGGTCGC GGCCGACGCGTCGGCCACCTGGTATCGCGCGTCGACGCTCGAGCCGGCGTTCGAGCTCAAGCGCGCGCACGACAAGATCG CGAACGGCTGCGCGGGCCTCGGCGACGGCTACTTCGCGTCGGTGAGCCGCGATCTGAAGCTGCGGATCTGGTCGCCGGAC TCTCACGCGGAGGTGATCGCGACACCCCACACGCATTCGATCAAGTGCGTCGCGGCGAGCGCCGACGGCCGCTATGTCGC CACCGGCAGCTACAACGGCCGCGTCGCCGTCTACGACCGCGTCGAGACGCGCTGGGCGCTCGACGCGCGCGTGACGACGG CGGGCGTATCGTCGCTCGCGTACGATCCGGCCGCGCGCGCGTTCCTCGCGAGCTCGTACGACGGCAACGTATACCGCATT CCGCTGGAGCGCGCATGA
Upstream 100 bases:
>100_bases TGCTGCAGACGGGCGTGTTCGTCAACACCACGAACCACGGCTACCTGCGCGCGAAGATCGATCACCACCGCCACGCCATC AACCTCAGCCAGGAACTGCA
Downstream 100 bases:
>100_bases GCGCCGCCGAACCGCACTACATCGACGCGCAACGCACGATCGCGCCCGTCGACGCGCCGCTCGCGGCGCCGCACGAATAC GCGGCGGTGCTGCGCTCGGA
Product: WD domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYVVTSSSDYSARLWTVPDLRLV AVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKLLHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANN GLVADIDLDGIETDTIAIAADGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVNAVQPVDGHLWTIGDAGIVRV DQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGRELHQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRA THVADLPLHANAVKGIAISGDLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLAYDPAARAFLASSYDGNVYRI PLERA
Sequences:
>Translated_565_residues MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYVVTSSSDYSARLWTVPDLRLV AVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKLLHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANN GLVADIDLDGIETDTIAIAADGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVNAVQPVDGHLWTIGDAGIVRV DQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGRELHQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRA THVADLPLHANAVKGIAISGDLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLAYDPAARAFLASSYDGNVYRI PLERA >Mature_565_residues MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYVVTSSSDYSARLWTVPDLRLV AVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKLLHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANN GLVADIDLDGIETDTIAIAADGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVNAVQPVDGHLWTIGDAGIVRV DQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGRELHQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRA THVADLPLHANAVKGIAISGDLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLAYDPAARAFLASSYDGNVYRI PLERA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 13 WD repeats [H]
Homologues:
Organism=Homo sapiens, GI19913369, Length=146, Percent_Identity=32.8767123287671, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI26665869, Length=187, Percent_Identity=26.7379679144385, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI21071067, Length=189, Percent_Identity=30.1587301587302, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI32189425, Length=156, Percent_Identity=28.2051282051282, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI83779014, Length=183, Percent_Identity=27.3224043715847, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI113865883, Length=278, Percent_Identity=24.1007194244604, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI102470001, Length=254, Percent_Identity=25.5905511811024, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI239787760, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI239787754, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI239787764, Length=182, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533709, Length=199, Percent_Identity=30.6532663316583, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17505895, Length=233, Percent_Identity=24.4635193133047, Blast_Score=76, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17540286, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17554220, Length=267, Percent_Identity=25.4681647940075, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17510485, Length=235, Percent_Identity=22.5531914893617, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17563260, Length=192, Percent_Identity=22.9166666666667, Blast_Score=66, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71995913, Length=192, Percent_Identity=22.9166666666667, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6319675, Length=144, Percent_Identity=34.0277777777778, Blast_Score=78, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6319916, Length=144, Percent_Identity=29.8611111111111, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6320056, Length=239, Percent_Identity=25.9414225941423, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323763, Length=223, Percent_Identity=26.0089686098655, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24663767, Length=241, Percent_Identity=24.896265560166, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI17136870, Length=136, Percent_Identity=33.0882352941176, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24649265, Length=143, Percent_Identity=32.1678321678322, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI17864464, Length=187, Percent_Identity=26.2032085561497, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI18859793, Length=248, Percent_Identity=24.1935483870968, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI19922278, Length=262, Percent_Identity=25.5725190839695, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020472 - InterPro: IPR011600 - InterPro: IPR015943 - InterPro: IPR001680 - InterPro: IPR011046 - InterPro: IPR019782 - InterPro: IPR019775 - InterPro: IPR017986 - InterPro: IPR019781 [H]
Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]
EC number: NA
Molecular weight: Translated: 60980; Mature: 60980
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS00678 WD_REPEATS_1 ; PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYV CCCCCCCCCCHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE VTSSSDYSARLWTVPDLRLVAVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKL EECCCCCCEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCEE LHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANNGLVADIDLDGIETDTIAIAA EEECCCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEE DGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA CCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECC AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVN CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCC AVQPVDGHLWTIGDAGIVRVDQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGREL CCCCCCCCEEEECCCCEEEECCHHCCCCCCHHHHHCCCCEEEEECCCCCCEECCCCCHHH HQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRATHVADLPLHANAVKGIAISG HHCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEC DLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD CEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCC SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLA CCCEEEECCCCCEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEEEEECCHHHHC YDPAARAFLASSYDGNVYRIPLERA CCHHHHHHEEECCCCCEEEEEECCC >Mature Secondary Structure MITHRAPISGIAAHRDQYVLTAGYDNQVILWDAKTQRPLARAMHDHLANQGAFSPDGAYV CCCCCCCCCCHHCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEE VTSSSDYSARLWTVPDLRLVAVFADQEDDVEMSVFHPDKPLVATASRDHRVRVYDFGGKL EECCCCCCEEEEECCCEEEEEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCEE LHTFSGHTADVISVEWMRGADEIVSSSDDGTIKRWSLANNGLVADIDLDGIETDTIAIAA EEECCCCCEEEEEEEECCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEE DGRIFAGNDEGEIISIGVDGARATIAAHDAGVKRLVLDGERGLLVSLSYDRTMRLWKVGA CCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCEEEEEEECC AGEPRALGGAALPPEVWPRSCSFEGDEHIVFSTFHSSYRRYNWKTERWDAAELPPTHGVN CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCC AVQPVDGHLWTIGDAGIVRVDQREHARTGSLCNFLAPAGELILTGGQLGKVFDARSGREL CCCCCCCCEEEECCCCEEEECCHHCCCCCCHHHHHCCCCEEEEECCCCCCEECCCCCHHH HQHRSPLNCGVAFARDGAAHAVIGTYTGEGIVLRIDGTRATHVADLPLHANAVKGIAISG HHCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEC DLIFSVAADASATWYRASTLEPAFELKRAHDKIANGCAGLGDGYFASVSRDLKLRIWSPD CEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCC SHAEVIATPHTHSIKCVAASADGRYVATGSYNGRVAVYDRVETRWALDARVTTAGVSSLA CCCEEEECCCCCEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEEEEECCHHHHC YDPAARAFLASSYDGNVYRIPLERA CCHHHHHHEEECCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]