Definition Burkholderia mallei NCTC 10247 chromosome II, complete genome.
Accession NC_009079
Length 2,352,693

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The map label for this gene is oppD [H]

Identifier: 126447508

GI number: 126447508

Start: 982957

End: 983838

Strand: Reverse

Name: oppD [H]

Synonym: BMA10247_A1047

Alternate gene names: 126447508

Gene position: 983838-982957 (Counterclockwise)

Preceding gene: 126447051

Following gene: 262192890

Centisome position: 41.82

GC content: 72.79

Gene sequence:

>882_bases
ATGCCCGCATCCTCCGTTTCCCCGAACACGCCGCCGCTCGCCGAGATCGAAAGGCTGCGCATCGGCTTTCGCACGCACGA
CGGCGCGCTCGTCGAGGCCGTGCGCGACCTGTCGTTCACGCTCGCGCCGGGCGAGCGGCTCGGCATCGTCGGCGAATCCG
GCTCCGGCAAGTCGCTGACGGGCCGCGCGCTGCTCGGCCTGCTGCCCGCCGCCGCGCAATGGCACGCGCGCGCGCTGCGC
TTCGAAGGCCGCGACCTGCTCGCGCTCGGCGCGCGCGAGCGGCGCAGGCTGTGCGGCGGCGCGATGGGGATGATCCTTCA
GGATCCCAAATATTCGCTGAATCCGGTCATGACGGTCGCCACGCAGATGGCCGAGGCGTTCCGGCTGCGCGAGCCCGGGC
TGCGCGGCCGCGCGCTGCGCGAGCGGATCGTCGACGCGCTCGCATCGGTCGAGATCCGCGATCCGGCGCGCGTCGCCGAC
GCGTATCCGCACGAGCTCTCGGGCGGGATGGGCCAGCGCGTGATGATCGCGATGATGGTATCGACGGGGCCGCGCCTGCT
TGTCGCCGACGAGCCGACGTCCGCGCTCGACGTCGCGGTGTCGATGCAGGTGCTCGCGGTGCTCGACGACATGATCGCGC
GCCACCGCACGGGCCTCCTGTTCATCAGCCACGATCTGCCGCTCGTCACGTCGTTCTGCGATCGCGTCGCGGTGATGTAC
GCGGGGCGCGTCGTCGAGACGTGCGCGGCGCGCGACCTCGTCCACGCGGCGCATCCGTACACGCGCGGCCTGCTCGCCGC
GACGCCGCCGCTCGCGAACCCGCCCGACGCGCTGCCGGTGCTCGAGCGCGATCCGGCATGGCTCACGCAGGCCGCACGAT
GA

Upstream 100 bases:

>100_bases
GCGACGCTGCCCGGCGCGTCGATCCTCGTCGTCAGCATCGCGTTCAACCTGCTCGGCGACGGTCTGCGCGACGTCTTCGA
TCCACGCCATGGAGCCTGAC

Downstream 100 bases:

>100_bases
GCGACGCACCGATGATCGACATCCGCGACGTATCGATCCGGTTCCCGACCCGCGGCGGCCACGTCGACGCGGTGCGCGGC
GCGAGCCTCGCCGTCGGCGC

Product: ABC transporter, ATP-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KD [H]

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MPASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALR
FEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVAD
AYPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY
AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR

Sequences:

>Translated_293_residues
MPASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALR
FEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVAD
AYPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY
AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR
>Mature_292_residues
PASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALRF
EGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADA
YPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMYA
GRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR

Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI11967971, Length=252, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI27436953, Length=214, Percent_Identity=22.8971962616822, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1789963, Length=270, Percent_Identity=43.7037037037037, Blast_Score=217, Evalue=8e-58,
Organism=Escherichia coli, GI48994883, Length=280, Percent_Identity=45, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=45.2830188679245, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1787759, Length=274, Percent_Identity=40.8759124087591, Blast_Score=195, Evalue=2e-51,
Organism=Escherichia coli, GI1788506, Length=281, Percent_Identity=42.3487544483986, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI1787548, Length=289, Percent_Identity=37.0242214532872, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787500, Length=275, Percent_Identity=37.4545454545455, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789962, Length=249, Percent_Identity=38.1526104417671, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1787758, Length=247, Percent_Identity=35.6275303643725, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789890, Length=236, Percent_Identity=36.4406779661017, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI48994997, Length=252, Percent_Identity=35.7142857142857, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=35.5140186915888, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789032, Length=235, Percent_Identity=33.1914893617021, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=29.5454545454545, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786398, Length=266, Percent_Identity=29.6992481203008, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87081791, Length=262, Percent_Identity=30.1526717557252, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788761, Length=237, Percent_Identity=30.8016877637131, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789991, Length=253, Percent_Identity=26.8774703557312, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=30.5785123966942, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=32.0987654320988, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=27.3127753303965, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=32.8767123287671, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=32.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787712, Length=239, Percent_Identity=28.8702928870293, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=28.5067873303167, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787089, Length=217, Percent_Identity=29.9539170506912, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=28.2511210762332, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=30.952380952381, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI48994943, Length=257, Percent_Identity=29.9610894941634, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786703, Length=248, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787041, Length=236, Percent_Identity=26.6949152542373, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081782, Length=222, Percent_Identity=28.8288288288288, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=234, Percent_Identity=28.6324786324786, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788644, Length=167, Percent_Identity=31.1377245508982, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=25.3393665158371, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786319, Length=258, Percent_Identity=24.4186046511628, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=29.3103448275862, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790190, Length=220, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=29.9539170506912, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=232, Percent_Identity=27.1551724137931, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=235, Percent_Identity=27.2340425531915, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=243, Percent_Identity=27.5720164609054, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=242, Percent_Identity=26.0330578512397, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=242, Percent_Identity=28.5123966942149, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24641565, Length=232, Percent_Identity=29.3103448275862, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=25.8215962441315, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85726357, Length=257, Percent_Identity=29.1828793774319, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 31528; Mature: 31397

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLT
CCCCCCCCCCCCHHHHHHHHHCEECCCHHHHHHHHHCEEEECCCCEEEEEECCCCCCCCH
GRALLGLLPAAAQWHARALRFEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHEECCCCCCCCHHHHHH
TQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADAYPHELSGGMGQRVMIAMMV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCHHHEEEEE
STGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR
HHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
PASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLT
CCCCCCCCCCCHHHHHHHHHCEECCCHHHHHHHHHCEEEECCCCEEEEEECCCCCCCCH
GRALLGLLPAAAQWHARALRFEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHEECCCCCCCCHHHHHH
TQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADAYPHELSGGMGQRVMIAMMV
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCHHHEEEEE
STGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR
HHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]