Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
---|---|
Accession | NC_009079 |
Length | 2,352,693 |
Click here to switch to the map view.
The map label for this gene is oppD [H]
Identifier: 126447508
GI number: 126447508
Start: 982957
End: 983838
Strand: Reverse
Name: oppD [H]
Synonym: BMA10247_A1047
Alternate gene names: 126447508
Gene position: 983838-982957 (Counterclockwise)
Preceding gene: 126447051
Following gene: 262192890
Centisome position: 41.82
GC content: 72.79
Gene sequence:
>882_bases ATGCCCGCATCCTCCGTTTCCCCGAACACGCCGCCGCTCGCCGAGATCGAAAGGCTGCGCATCGGCTTTCGCACGCACGA CGGCGCGCTCGTCGAGGCCGTGCGCGACCTGTCGTTCACGCTCGCGCCGGGCGAGCGGCTCGGCATCGTCGGCGAATCCG GCTCCGGCAAGTCGCTGACGGGCCGCGCGCTGCTCGGCCTGCTGCCCGCCGCCGCGCAATGGCACGCGCGCGCGCTGCGC TTCGAAGGCCGCGACCTGCTCGCGCTCGGCGCGCGCGAGCGGCGCAGGCTGTGCGGCGGCGCGATGGGGATGATCCTTCA GGATCCCAAATATTCGCTGAATCCGGTCATGACGGTCGCCACGCAGATGGCCGAGGCGTTCCGGCTGCGCGAGCCCGGGC TGCGCGGCCGCGCGCTGCGCGAGCGGATCGTCGACGCGCTCGCATCGGTCGAGATCCGCGATCCGGCGCGCGTCGCCGAC GCGTATCCGCACGAGCTCTCGGGCGGGATGGGCCAGCGCGTGATGATCGCGATGATGGTATCGACGGGGCCGCGCCTGCT TGTCGCCGACGAGCCGACGTCCGCGCTCGACGTCGCGGTGTCGATGCAGGTGCTCGCGGTGCTCGACGACATGATCGCGC GCCACCGCACGGGCCTCCTGTTCATCAGCCACGATCTGCCGCTCGTCACGTCGTTCTGCGATCGCGTCGCGGTGATGTAC GCGGGGCGCGTCGTCGAGACGTGCGCGGCGCGCGACCTCGTCCACGCGGCGCATCCGTACACGCGCGGCCTGCTCGCCGC GACGCCGCCGCTCGCGAACCCGCCCGACGCGCTGCCGGTGCTCGAGCGCGATCCGGCATGGCTCACGCAGGCCGCACGAT GA
Upstream 100 bases:
>100_bases GCGACGCTGCCCGGCGCGTCGATCCTCGTCGTCAGCATCGCGTTCAACCTGCTCGGCGACGGTCTGCGCGACGTCTTCGA TCCACGCCATGGAGCCTGAC
Downstream 100 bases:
>100_bases GCGACGCACCGATGATCGACATCCGCGACGTATCGATCCGGTTCCCGACCCGCGGCGGCCACGTCGACGCGGTGCGCGGC GCGAGCCTCGCCGTCGGCGC
Product: ABC transporter, ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MPASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALR FEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVAD AYPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR
Sequences:
>Translated_293_residues MPASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALR FEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVAD AYPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR >Mature_292_residues PASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLTGRALLGLLPAAAQWHARALRF EGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVATQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADA YPHELSGGMGQRVMIAMMVSTGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMYA GRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI11967971, Length=252, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI27436953, Length=214, Percent_Identity=22.8971962616822, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789963, Length=270, Percent_Identity=43.7037037037037, Blast_Score=217, Evalue=8e-58, Organism=Escherichia coli, GI48994883, Length=280, Percent_Identity=45, Blast_Score=213, Evalue=1e-56, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=45.2830188679245, Blast_Score=199, Evalue=1e-52, Organism=Escherichia coli, GI1787759, Length=274, Percent_Identity=40.8759124087591, Blast_Score=195, Evalue=2e-51, Organism=Escherichia coli, GI1788506, Length=281, Percent_Identity=42.3487544483986, Blast_Score=194, Evalue=4e-51, Organism=Escherichia coli, GI1787548, Length=289, Percent_Identity=37.0242214532872, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1787500, Length=275, Percent_Identity=37.4545454545455, Blast_Score=162, Evalue=2e-41, Organism=Escherichia coli, GI1789962, Length=249, Percent_Identity=38.1526104417671, Blast_Score=140, Evalue=9e-35, Organism=Escherichia coli, GI1787758, Length=247, Percent_Identity=35.6275303643725, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1789890, Length=236, Percent_Identity=36.4406779661017, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI48994997, Length=252, Percent_Identity=35.7142857142857, Blast_Score=121, Evalue=6e-29, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=35.5140186915888, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1789032, Length=235, Percent_Identity=33.1914893617021, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=29.5454545454545, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1786398, Length=266, Percent_Identity=29.6992481203008, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI87081791, Length=262, Percent_Identity=30.1526717557252, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788761, Length=237, Percent_Identity=30.8016877637131, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789991, Length=253, Percent_Identity=26.8774703557312, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=30.5785123966942, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=32.0987654320988, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790525, Length=227, Percent_Identity=27.3127753303965, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=32.8767123287671, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787105, Length=240, Percent_Identity=32.5, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787712, Length=239, Percent_Identity=28.8702928870293, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=28.5067873303167, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787089, Length=217, Percent_Identity=29.9539170506912, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=29.6296296296296, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87082267, Length=223, Percent_Identity=28.2511210762332, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=30.952380952381, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI48994943, Length=257, Percent_Identity=29.9610894941634, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1786703, Length=248, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787041, Length=236, Percent_Identity=26.6949152542373, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI87081782, Length=222, Percent_Identity=28.8288288288288, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48995001, Length=234, Percent_Identity=28.6324786324786, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788644, Length=167, Percent_Identity=31.1377245508982, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=25.3393665158371, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786319, Length=258, Percent_Identity=24.4186046511628, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787792, Length=232, Percent_Identity=29.3103448275862, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1790190, Length=220, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=29.9539170506912, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212646699, Length=232, Percent_Identity=27.1551724137931, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25146777, Length=235, Percent_Identity=27.2340425531915, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17541710, Length=243, Percent_Identity=27.5720164609054, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193202349, Length=242, Percent_Identity=26.0330578512397, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=242, Percent_Identity=28.5123966942149, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI24641565, Length=232, Percent_Identity=29.3103448275862, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=25.8215962441315, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI85726357, Length=257, Percent_Identity=29.1828793774319, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31528; Mature: 31397
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLT CCCCCCCCCCCCHHHHHHHHHCEECCCHHHHHHHHHCEEEECCCCEEEEEECCCCCCCCH GRALLGLLPAAAQWHARALRFEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVA HHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHEECCCCCCCCHHHHHH TQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADAYPHELSGGMGQRVMIAMMV HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCHHHEEEEE STGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR HHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC >Mature Secondary Structure PASSVSPNTPPLAEIERLRIGFRTHDGALVEAVRDLSFTLAPGERLGIVGESGSGKSLT CCCCCCCCCCCHHHHHHHHHCEECCCHHHHHHHHHCEEEECCCCEEEEEECCCCCCCCH GRALLGLLPAAAQWHARALRFEGRDLLALGARERRRLCGGAMGMILQDPKYSLNPVMTVA HHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHEECCCCCCCCHHHHHH TQMAEAFRLREPGLRGRALRERIVDALASVEIRDPARVADAYPHELSGGMGQRVMIAMMV HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCHHHEEEEE STGPRLLVADEPTSALDVAVSMQVLAVLDDMIARHRTGLLFISHDLPLVTSFCDRVAVMY CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH AGRVVETCAARDLVHAAHPYTRGLLAATPPLANPPDALPVLERDPAWLTQAAR HHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]