Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is araC [H]
Identifier: 126447502
GI number: 126447502
Start: 1125569
End: 1126597
Strand: Reverse
Name: araC [H]
Synonym: BMA10247_A1151
Alternate gene names: 126447502
Gene position: 1126597-1125569 (Counterclockwise)
Preceding gene: 126446312
Following gene: 126446059
Centisome position: 47.89
GC content: 71.62
Gene sequence:
>1029_bases ATGCCTTCCCCAGTCAAGCCGCGCACGTACGCCATGCCCGAGCGCAGCGATCGCCTCGATTTCTACATTCGCGACGAGGC CGCCCGCCGGGCGATCACCGAGCCGCACCGGCATGCGTACTTCCAGATCCAGTTCAACCTCGGCGGCGACACCGAGCAGC GCATCGGCGGGCTCACGCGAGCGTTCCCGCGCGGCGCGCTCGCGTTCGTGCTGCCGTACCGCGAGCACCTGATCGCGCAT CCGCCGGGCGCGCACTTCGTCGTGATCAATTTCTCGCAAACGTTCCTGCGCGCCGATCTCGACGTCGATCCGCTCGATCT CGAGGATGTCTGCGCACAGCGCGCGCCCGAGCTCGCGCCGTTTCGCTTCCAGGAGCATCTGGACTTCATCCTGACCGGCG CGGCATTCGACGACGCGCGCCGCCTCGCGCAGCGGATGCTAGAAGCCAACCGCGCGCGCACGTTCGGCTCGGTGCCGCTG CTGCGCGGCTATCTGCTGCAGTTGATCGGGCTCGTCTGCACGCAATACGCGGGGCCGCTCACGAAGCTCGCCCAGAGCGG CGCGCACCGCACGGGCCGCCGCGACGCGTTCGCGCGCGTGCTGCGCCACGTCCGCGCGAACCTGACGAACGACGCGCTCA CGCTCGCGGGCACCGCGCGCGCGGCGTGCCTGTCGCCGAACTACCTCGCGCACCTGATCCGCAAGGAGACGGGCAGCACG TTCACCGATCTCGTCACCGCGCGGCGGATCGCGCTTGCCCAATCGCTGCTCGCGCATACGACGCGGCGCATCGCCGACAT CGCGCACGCGGTCGGGTTTCGCGACGAGGGCTATTTCTCGCGGCGCTTTCGCGCGTGCGTCGGCGTATCGCCGAAGGAGT ATCGCGACGCGAACGGCGCGCCCGGCCCGGCCGATGCGCTCGATTCGGTCAATACGGCCGGGCCGCGCGCCGCGCCCGGG CGCGGCGAAACGCGCGGCGCGGCCGGCGCGAAGAGCCCGGCGCGCGCGGCCGCGAAGCCGCGCGCGTAG
Upstream 100 bases:
>100_bases CCTCCCCTGCCCGCGCGTTTTTAGCGACAATTCGACCATTGCCCGTCGCGCCGCCGCGCGCGGCGGACCGCGCGACCCGC ATCACGATCACCGAACGCCC
Downstream 100 bases:
>100_bases TTTTGTCCATGAAGACCCCACATTCGTCGCATCGGCGCGCGGGCGGCGCGGGTATCGTCGACGTGTCGACGGCGCGCGCC GCCGCGCCCGCCCCGGCGCG
Product: AraC family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MPSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGLTRAFPRGALAFVLPYREHLIAH PPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPL LRGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSVNTAGPRAAPG RGETRGAAGAKSPARAAAKPRA
Sequences:
>Translated_342_residues MPSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGLTRAFPRGALAFVLPYREHLIAH PPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPL LRGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSVNTAGPRAAPG RGETRGAAGAKSPARAAAKPRA >Mature_341_residues PSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGLTRAFPRGALAFVLPYREHLIAHP PGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAPFRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLL RGYLLQLIGLVCTQYAGPLTKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGSTF TDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGAPGPADALDSVNTAGPRAAPGR GETRGAAGAKSPARAAAKPRA
Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp
COG id: COG4753
COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1786251, Length=94, Percent_Identity=37.2340425531915, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790391, Length=84, Percent_Identity=40.4761904761905, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR003313 - InterPro: IPR018062 - InterPro: IPR020449 - InterPro: IPR018060 [H]
Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 37528; Mature: 37397
Theoretical pI: Translated: 10.64; Mature: 10.64
Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGLTR CCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHH AFPRGALAFVLPYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAP HCCCCCEEEEECHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCC FRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH TKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCCH FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCC PGPADALDSVNTAGPRAAPGRGETRGAAGAKSPARAAAKPRA CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC >Mature Secondary Structure PSPVKPRTYAMPERSDRLDFYIRDEAARRAITEPHRHAYFQIQFNLGGDTEQRIGGLTR CCCCCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHH AFPRGALAFVLPYREHLIAHPPGAHFVVINFSQTFLRADLDVDPLDLEDVCAQRAPELAP HCCCCCEEEEECHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHCCCCCCC FRFQEHLDFILTGAAFDDARRLAQRMLEANRARTFGSVPLLRGYLLQLIGLVCTQYAGPL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH TKLAQSGAHRTGRRDAFARVLRHVRANLTNDALTLAGTARAACLSPNYLAHLIRKETGST HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCHHHHHHHHHHHCCCH FTDLVTARRIALAQSLLAHTTRRIADIAHAVGFRDEGYFSRRFRACVGVSPKEYRDANGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCCC PGPADALDSVNTAGPRAAPGRGETRGAAGAKSPARAAAKPRA CCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]