Click here to switch to the map view.

The map label for this gene is 126447461

Identifier: 126447461

GI number: 126447461

Start: 2013003

End: 2014202

Strand: Reverse

Name: 126447461

Synonym: BMA10247_A2079

Alternate gene names: NA

Gene position: 2014202-2013003 (Counterclockwise)

Preceding gene: 126445732

Following gene: 126446637

Centisome position: 85.61

GC content: 66.5

Gene sequence:

>1200_bases
ATGAAAAAGGCGGCAGCAGCATGGTTGGTGGCGGGGAGCATGTGCGCCGGCGCGCACGCGCAAGGCACGGTGACGCTCTA
CGGGATCGTCGACGCGGGGCTCGGCTATACGAGCGACCAGCGCGTCGCGCAGACCAAGGGGGCGCTCGGCTCGCCCGTCG
GCTACCGCAATGAGTCGAGCTACGGCTTCGCGAGCGGCACCTGGTCGGGCAGCCGCTGGGGGCTGAAGGGCAAGGAGGAG
CTGGGCGGCGGTCTCGCAGCCGTGTTCCAGCTCGAGAACGGCTTTAACATCGGCACCGGACAGGCGGGGCAGGGCGGGCG
AATGTTCGGCCGGCAGGCGTGGATGGGGCTGTCGAGCGAACGCTACGGGACGCTCACGATGGGGCGCCAGTACGATCCGA
TCGTCGACTTCGTCGGCACGATCGGCGCGGGCGCGTTCCTGACCGGCATGGGCGCGCATCCGGGCGATCTCGACAACATC
GACAATCAGGCGCGCGAGAACAACTCGATCAAGTACGTGAGCCCGAAGTTCGGCGGCCTCGCGCTCGGCGCTCTGTACGG
CTTCGGCAATCAGGCGGGCAGCGTGAAGAACCAGAACACGTGGAGCGTGGGCGGCCAGTATGTGAACGGGCCGTTCTCGC
TCGGCGCCGCGTACCTGTATGCGACGAACGCATACGGCGCGAACGGCGGCGCGTGGACGGGTTCGTACGACGGCACGTTC
GCTTCGTCGATCAACGAAGGCTTCGCATCGGCGAAGAGCATGCAGATCGTCGCGGCGGCGAGCACCTATCAGATCGGCGC
GGTGACGCTCGGCCTGTCTTACAGCAACACGCGGTACAAATCCGGCGCGTTCTCGACGTTCAACGGCACCGCGACGTACA
ACTCGATCGGCGGCACCGTATCGTGGCAGGCGACGCCCGAGCTGCGCGTCGCGGCGGGCTATGATTTCACGCGTGGCAGC
TCGATCGACGGTCAGTCCGCGCCGAAATACCATCAGGTGAACTTCGCGTCGTACTACTACCTGTCCAAGCGCACCGCGCT
GTATGGCCTCGTCGGTTATCAGAAGGCGAGCGGCAAGACGCTCGATGCGTACGGCAACGTCGTCGCGGCGACGGCGTCGG
TCGGCGACGTCGGCAACGGCATTTCGTCGGCGGGCGATACGCAGACGCTCGTGCGCATCGGCGTGCGTCACACGTTCTGA

Upstream 100 bases:

>100_bases
GCGCGTCGCGCAGTGGCTCGCCGATTCGGCGTAGCCGCGTCGGGGGCGGGGGAATGAACACGCTTCATTCGTTTGATGCT
ATTTGACAGGAATCCTATTC

Downstream 100 bases:

>100_bases
CGCACGCGGCGCGCGTGCGCCGGCCGTTTCGCGCGGCCGGCGCATGAAGCGCGCGCTACGCCGCGCTCGCCGTCTCGGTG
GCCTGCGCGAGGCTCAGCAC

Product: putative outer membrane porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MKKAAAAWLVAGSMCAGAHAQGTVTLYGIVDAGLGYTSDQRVAQTKGALGSPVGYRNESSYGFASGTWSGSRWGLKGKEE
LGGGLAAVFQLENGFNIGTGQAGQGGRMFGRQAWMGLSSERYGTLTMGRQYDPIVDFVGTIGAGAFLTGMGAHPGDLDNI
DNQARENNSIKYVSPKFGGLALGALYGFGNQAGSVKNQNTWSVGGQYVNGPFSLGAAYLYATNAYGANGGAWTGSYDGTF
ASSINEGFASAKSMQIVAAASTYQIGAVTLGLSYSNTRYKSGAFSTFNGTATYNSIGGTVSWQATPELRVAAGYDFTRGS
SIDGQSAPKYHQVNFASYYYLSKRTALYGLVGYQKASGKTLDAYGNVVAATASVGDVGNGISSAGDTQTLVRIGVRHTF

Sequences:

>Translated_399_residues
MKKAAAAWLVAGSMCAGAHAQGTVTLYGIVDAGLGYTSDQRVAQTKGALGSPVGYRNESSYGFASGTWSGSRWGLKGKEE
LGGGLAAVFQLENGFNIGTGQAGQGGRMFGRQAWMGLSSERYGTLTMGRQYDPIVDFVGTIGAGAFLTGMGAHPGDLDNI
DNQARENNSIKYVSPKFGGLALGALYGFGNQAGSVKNQNTWSVGGQYVNGPFSLGAAYLYATNAYGANGGAWTGSYDGTF
ASSINEGFASAKSMQIVAAASTYQIGAVTLGLSYSNTRYKSGAFSTFNGTATYNSIGGTVSWQATPELRVAAGYDFTRGS
SIDGQSAPKYHQVNFASYYYLSKRTALYGLVGYQKASGKTLDAYGNVVAATASVGDVGNGISSAGDTQTLVRIGVRHTF
>Mature_399_residues
MKKAAAAWLVAGSMCAGAHAQGTVTLYGIVDAGLGYTSDQRVAQTKGALGSPVGYRNESSYGFASGTWSGSRWGLKGKEE
LGGGLAAVFQLENGFNIGTGQAGQGGRMFGRQAWMGLSSERYGTLTMGRQYDPIVDFVGTIGAGAFLTGMGAHPGDLDNI
DNQARENNSIKYVSPKFGGLALGALYGFGNQAGSVKNQNTWSVGGQYVNGPFSLGAAYLYATNAYGANGGAWTGSYDGTF
ASSINEGFASAKSMQIVAAASTYQIGAVTLGLSYSNTRYKSGAFSTFNGTATYNSIGGTVSWQATPELRVAAGYDFTRGS
SIDGQSAPKYHQVNFASYYYLSKRTALYGLVGYQKASGKTLDAYGNVVAATASVGDVGNGISSAGDTQTLVRIGVRHTF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41355; Mature: 41355

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAAAAWLVAGSMCAGAHAQGTVTLYGIVDAGLGYTSDQRVAQTKGALGSPVGYRNESS
CCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCC
YGFASGTWSGSRWGLKGKEELGGGLAAVFQLENGFNIGTGQAGQGGRMFGRQAWMGLSSE
CCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCC
RYGTLTMGRQYDPIVDFVGTIGAGAFLTGMGAHPGDLDNIDNQARENNSIKYVSPKFGGL
CCEEEECCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCE
ALGALYGFGNQAGSVKNQNTWSVGGQYVNGPFSLGAAYLYATNAYGANGGAWTGSYDGTF
EEEHHHCCCCCCCCCCCCCEEECCCEEECCCHHHCEEEEEEECCCCCCCCCCCCCCCCHH
ASSINEGFASAKSMQIVAAASTYQIGAVTLGLSYSNTRYKSGAFSTFNGTATYNSIGGTV
HHHHHHHHHCCCCEEEEEEECEEEEEEEEEEEECCCCEECCCCCCCCCCCEEECCCCCEE
SWQATPELRVAAGYDFTRGSSIDGQSAPKYHQVNFASYYYLSKRTALYGLVGYQKASGKT
EEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCE
LDAYGNVVAATASVGDVGNGISSAGDTQTLVRIGVRHTF
EHHCCCEEEEEECCCCCCCCCCCCCCHHHHHEEHHHCCC
>Mature Secondary Structure
MKKAAAAWLVAGSMCAGAHAQGTVTLYGIVDAGLGYTSDQRVAQTKGALGSPVGYRNESS
CCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCC
YGFASGTWSGSRWGLKGKEELGGGLAAVFQLENGFNIGTGQAGQGGRMFGRQAWMGLSSE
CCCCCCCCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCC
RYGTLTMGRQYDPIVDFVGTIGAGAFLTGMGAHPGDLDNIDNQARENNSIKYVSPKFGGL
CCEEEECCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCE
ALGALYGFGNQAGSVKNQNTWSVGGQYVNGPFSLGAAYLYATNAYGANGGAWTGSYDGTF
EEEHHHCCCCCCCCCCCCCEEECCCEEECCCHHHCEEEEEEECCCCCCCCCCCCCCCCHH
ASSINEGFASAKSMQIVAAASTYQIGAVTLGLSYSNTRYKSGAFSTFNGTATYNSIGGTV
HHHHHHHHHCCCCEEEEEEECEEEEEEEEEEEECCCCEECCCCCCCCCCCEEECCCCCEE
SWQATPELRVAAGYDFTRGSSIDGQSAPKYHQVNFASYYYLSKRTALYGLVGYQKASGKT
EEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCCE
LDAYGNVVAATASVGDVGNGISSAGDTQTLVRIGVRHTF
EHHCCCEEEEEECCCCCCCCCCCCCCHHHHHEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]