Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 126447408

GI number: 126447408

Start: 1907580

End: 1908605

Strand: Direct

Name: glxA [H]

Synonym: BMA10247_A1980

Alternate gene names: 126447408

Gene position: 1907580-1908605 (Clockwise)

Preceding gene: 126447488

Following gene: 126447681

Centisome position: 81.08

GC content: 67.64

Gene sequence:

>1026_bases
ATGTCGCCCGACCGCACCGCGTCGCTGTCTCATTTCGCGTTCATGCCGCTGCCCAACTTCACGATGATCGCGTTCACGAA
CGCGATCGAAGTGCTCAGGATGGCCAACTACCTGAGCGGGCAGCCGCTGTACCGCTGGTCGATCATCAGCCCGCAGGGCG
GCATGGTCACGGCAAGCAACGGGCTCGCGGTCGACACCGGCCCGGCCGAATGCGCGGGGCAGCCGGACATCGTGTTCGTC
TGCGGCGGCGTGGACGTGCAGCGCGCGACGCAACCCGAGCATCTCGCGGCGCTGCGCCGCTTCGCGCGCGCGGGCGTCGC
GCTCGGCAGCCTGTGCACCGGCACCTATGCGCTCGCGAAGGCAGGGCTCCTCGCCGGCTACGCCTGTGCGATCCATTGGG
AAAATCTGTCGGCGCTGAAGGAAGAATTTCCCGATACGCGCTTTCTCAAGGAACTGTTCGTGATCGATCGCGATCGCGTG
ACGTGCACGGGCGGCGTCGCGCCGCTCGACATGATGCTGAACCTGATCGCGTCGCGCATCGGCACCGCGCGCGTCACGCA
GATCGCCGAGCAGTTCATCGTCGAGCACGTGCGCGACACGAGCGCGCAGCAGCGCATGCCGCTCGTCGCCCGGCTCGGCT
CCGCGAACAAATCGCTGTTCGAAGTGATCGCGCTGATGGAGAACAACATCGAGGAGCCGCTGTCGCGCGAAGAACTCGCG
CGGCTCGCGAACATGTCGCAGCGGCAGTTGCAGCGCCTCTTTCGCGAGCATCTCGGCATGACGCCGACGCACTACTACCT
GACGCTGCGCCTGCGCCGCGCGCGCGAGCTGCTGCTGCAGACCGACATGTCGATCATGCACATCACGATGGCGTGCGGCT
TCCAATCCGCGTGCCACTTCAGCAAGAGCTACCGCGACGCGTTCGGCACCGCGCCGACGCGCGAGCGCCGCAAGCAGGTC
GCGCCGCTCGCGCAGCCGTCGATGCCGGGCGGCGCGCCCGCGCCGTCGATGATGCTGCACGCGTGA

Upstream 100 bases:

>100_bases
TCTAGGGTTTAGCCGTATGGCACGCTTGTTGCGCTCGATTTCACAATACGCGAGCCGAGCGCCCGGCCGCATCAAGATCA
GATTCAAGGAACGCTTCCCC

Downstream 100 bases:

>100_bases
GTCGCGCCGCCGGGCCGTGCCGAGCGCCGTGAACAAGCGTCCACGGAAACCGGCATTCGAAACCGGCCCCCGAAATCGCA
TACCGAAACGAACGGCCCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMVTASNGLAVDTGPAECAGQPDIVFV
CGGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAKAGLLAGYACAIHWENLSALKEEFPDTRFLKELFVIDRDRV
TCTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSANKSLFEVIALMENNIEEPLSREELA
RLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHFSKSYRDAFGTAPTRERRKQV
APLAQPSMPGGAPAPSMMLHA

Sequences:

>Translated_341_residues
MSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMVTASNGLAVDTGPAECAGQPDIVFV
CGGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAKAGLLAGYACAIHWENLSALKEEFPDTRFLKELFVIDRDRV
TCTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSANKSLFEVIALMENNIEEPLSREELA
RLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHFSKSYRDAFGTAPTRERRKQV
APLAQPSMPGGAPAPSMMLHA
>Mature_340_residues
SPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMVTASNGLAVDTGPAECAGQPDIVFVC
GGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAKAGLLAGYACAIHWENLSALKEEFPDTRFLKELFVIDRDRVT
CTGGVAPLDMMLNLIASRIGTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSANKSLFEVIALMENNIEEPLSREELAR
LANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHFSKSYRDAFGTAPTRERRKQVA
PLAQPSMPGGAPAPSMMLHA

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37571; Mature: 37440

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMVTASN
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECC
GLAVDTGPAECAGQPDIVFVCGGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAK
CEEECCCCHHHCCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLLAGYACAIHWENLSALKEEFPDTRFLKELFVIDRDRVTCTGGVAPLDMMLNLIASRI
HHHHHHHEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
GTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSANKSLFEVIALMENNIEEPLSREELA
CHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHH
RLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHF
HHHCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
SKSYRDAFGTAPTRERRKQVAPLAQPSMPGGAPAPSMMLHA
HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQPLYRWSIISPQGGMVTASN
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECC
GLAVDTGPAECAGQPDIVFVCGGVDVQRATQPEHLAALRRFARAGVALGSLCTGTYALAK
CEEECCCCHHHCCCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLLAGYACAIHWENLSALKEEFPDTRFLKELFVIDRDRVTCTGGVAPLDMMLNLIASRI
HHHHHHHEEEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
GTARVTQIAEQFIVEHVRDTSAQQRMPLVARLGSANKSLFEVIALMENNIEEPLSREELA
CHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHH
RLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHF
HHHCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
SKSYRDAFGTAPTRERRKQVAPLAQPSMPGGAPAPSMMLHA
HHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]