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The map label for this gene is abgR [H]

Identifier: 126447406

GI number: 126447406

Start: 2158901

End: 2159803

Strand: Reverse

Name: abgR [H]

Synonym: BMA10247_A2219

Alternate gene names: 126447406

Gene position: 2159803-2158901 (Counterclockwise)

Preceding gene: 126447084

Following gene: 126447743

Centisome position: 91.8

GC content: 68.88

Gene sequence:

>903_bases
ATGAAATATCATCAGTTGAAAGCGTTCGTCGCCGTGGCCGACGAAGGCAGCATCCGCGCGGCGGCGCGCCGGCTGAACGT
ATCGCCGGCCGCATTGACGAAGGCCGTGAAGGAACTCGAGCTCGCGCTCGGCGTATCGCTCGTCGTGCGCACCGCGCGCG
GCGTGCAGCTCACCCGCTTCGGCCAGCAGTTGCAGGTGCGCGCGAGCCTGATCGTCGCCGAGATGCAGCGCGCGCGCGAC
GATATCGAGCAGGCGCAGGGCGCGACGACGGGCGCCGTTGCCGCCGCGATCACGCCGGCCGCCGCGGTGACGATCCTGCC
GGATGCGTTTCGCGCGTTTCGCCGGCGGTTTCCGCTCGCGCGCGTGAGCATCGTCGAAGGGTTTCCCGGCGTCGCACTGC
CGAAGCTGCACGACGGCTCGCTCGATTTCGCTGTGTCGGTGGTGGTGCCGGAGCTGCTCGCCGCGGAATTCGAGCACGCG
CAGCTGTACGCGAGCCGGCACGTGATCGTCGCGCGCAACGCGCATCCGCTCGCGACGGCGACGTCGCTCGCCGATCTCGT
CGATGCCGACTGGCTGATGAATCCGTCGCCCGAAAGTTCGACGCAACTGATGTTCAACTGTTTCGCCGAGCATGGCTTGC
CGGCGCCGACGCGCGTCGTCGAGTGCCCGAGCTACGCGATCGCGCACAGCCTCATTCAGGGCTCCGATCTGATTGCGTCG
ATGCCCGAGCAACTGCTCGGCGTCGAATGGTCGCGCGACCGGATCGCCGTGCTGCCGATACGGGAGGCGCTGCCGGCCGC
ATCCGTGCAAGTGGTGACGCGCCGCGACAGCCCGCTGACGCCCGCTGCGGCGATGCTCGTCGATTGCATGCGCGACGCGG
CGCGGCGGCATGGCTTGCGTTGA

Upstream 100 bases:

>100_bases
GATAAATTGCGTCGGTGCTCACCGCAGGTTGCCTCTAGGGAACACCCTGATTCGCCGCGGCGCAGCCGATCAACGGCTTT
CACGAACCGCGCGTTTTCCC

Downstream 100 bases:

>100_bases
CGCGCGCCGCGCGCGCGGGTTGCCCTCGGCGGAGGTGGGCGGCTCGATGGGCGCTGCTTGTGCGCAGCCTTTGGCCTAAG
GGCTGCTTGCAGGCGGAACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKYHQLKAFVAVADEGSIRAAARRLNVSPAALTKAVKELELALGVSLVVRTARGVQLTRFGQQLQVRASLIVAEMQRARD
DIEQAQGATTGAVAAAITPAAAVTILPDAFRAFRRRFPLARVSIVEGFPGVALPKLHDGSLDFAVSVVVPELLAAEFEHA
QLYASRHVIVARNAHPLATATSLADLVDADWLMNPSPESSTQLMFNCFAEHGLPAPTRVVECPSYAIAHSLIQGSDLIAS
MPEQLLGVEWSRDRIAVLPIREALPAASVQVVTRRDSPLTPAAAMLVDCMRDAARRHGLR

Sequences:

>Translated_300_residues
MKYHQLKAFVAVADEGSIRAAARRLNVSPAALTKAVKELELALGVSLVVRTARGVQLTRFGQQLQVRASLIVAEMQRARD
DIEQAQGATTGAVAAAITPAAAVTILPDAFRAFRRRFPLARVSIVEGFPGVALPKLHDGSLDFAVSVVVPELLAAEFEHA
QLYASRHVIVARNAHPLATATSLADLVDADWLMNPSPESSTQLMFNCFAEHGLPAPTRVVECPSYAIAHSLIQGSDLIAS
MPEQLLGVEWSRDRIAVLPIREALPAASVQVVTRRDSPLTPAAAMLVDCMRDAARRHGLR
>Mature_300_residues
MKYHQLKAFVAVADEGSIRAAARRLNVSPAALTKAVKELELALGVSLVVRTARGVQLTRFGQQLQVRASLIVAEMQRARD
DIEQAQGATTGAVAAAITPAAAVTILPDAFRAFRRRFPLARVSIVEGFPGVALPKLHDGSLDFAVSVVVPELLAAEFEHA
QLYASRHVIVARNAHPLATATSLADLVDADWLMNPSPESSTQLMFNCFAEHGLPAPTRVVECPSYAIAHSLIQGSDLIAS
MPEQLLGVEWSRDRIAVLPIREALPAASVQVVTRRDSPLTPAAAMLVDCMRDAARRHGLR

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=291, Percent_Identity=32.6460481099656, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1789506, Length=299, Percent_Identity=25.4180602006689, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081904, Length=295, Percent_Identity=22.7118644067797, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI145693105, Length=173, Percent_Identity=28.9017341040462, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=25.1700680272109, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786401, Length=123, Percent_Identity=34.9593495934959, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=146, Percent_Identity=30.1369863013699, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788887, Length=182, Percent_Identity=30.2197802197802, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=32.8767123287671, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI157672245, Length=251, Percent_Identity=28.6852589641434, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788748, Length=149, Percent_Identity=30.8724832214765, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32270; Mature: 32270

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50931 HTH_LYSR ; PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYHQLKAFVAVADEGSIRAAARRLNVSPAALTKAVKELELALGVSLVVRTARGVQLTRF
CCHHHEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
GQQLQVRASLIVAEMQRARDDIEQAQGATTGAVAAAITPAAAVTILPDAFRAFRRRFPLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHEEECHHHHHHHHHHCCHH
RVSIVEGFPGVALPKLHDGSLDFAVSVVVPELLAAEFEHAQLYASRHVIVARNAHPLATA
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHH
TSLADLVDADWLMNPSPESSTQLMFNCFAEHGLPAPTRVVECPSYAIAHSLIQGSDLIAS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHCCCHHHHH
MPEQLLGVEWSRDRIAVLPIREALPAASVQVVTRRDSPLTPAAAMLVDCMRDAARRHGLR
HHHHHHCCCCCCCCEEEEEHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKYHQLKAFVAVADEGSIRAAARRLNVSPAALTKAVKELELALGVSLVVRTARGVQLTRF
CCHHHEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
GQQLQVRASLIVAEMQRARDDIEQAQGATTGAVAAAITPAAAVTILPDAFRAFRRRFPLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHEEECHHHHHHHHHHCCHH
RVSIVEGFPGVALPKLHDGSLDFAVSVVVPELLAAEFEHAQLYASRHVIVARNAHPLATA
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHH
TSLADLVDADWLMNPSPESSTQLMFNCFAEHGLPAPTRVVECPSYAIAHSLIQGSDLIAS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHCCCHHHHH
MPEQLLGVEWSRDRIAVLPIREALPAASVQVVTRRDSPLTPAAAMLVDCMRDAARRHGLR
HHHHHHCCCCCCCCEEEEEHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]