Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is czcC [H]
Identifier: 126447292
GI number: 126447292
Start: 1154640
End: 1156025
Strand: Reverse
Name: czcC [H]
Synonym: BMA10247_A1183
Alternate gene names: 126447292
Gene position: 1156025-1154640 (Counterclockwise)
Preceding gene: 126446040
Following gene: 126447709
Centisome position: 49.14
GC content: 74.39
Gene sequence:
>1386_bases ATGCCCAAGCGTATCTTCGCCGCACTCGTGTCGGCCGCGATCGCGGCGTCGGCGGTGCAGGCGCAAGCGCAGCCCGCGCC GGCCCCGTCCGCGCCCGACGGCCCGGCCGCCGCACCGCCGGACGCCCGCGCGGCCTCCGTCTCCGTCACGCCCGCCGTCT CTCCCGCACCGATTTCGACTTCGACTGTGTCCGTCGCGCCGCCCGCGCTGTCGCTCGACGACGCACTGGCCCTAGCCGCA GCGAACAACCCGCTGCTGAAAAGCGCGCGATCGAGCGCCGACGCATCCGTCGGCGCGCTCGTCCAGGCGGGCGCGCGTCC GAATCCGACCGTGTCGTTCCTGCAGGAAGGGTTCGGGCGGCAGGAGCGCACGACGACCGCCGTCGTCAGCCAGCCGATCG AGCTCGGCGGCAAGCGGCGCTCGCGCGTCGACGCCGCATCGTACGGCCGCGAATCCGCGCTCGCGTCGCTCGACGGCCGC GCGGCCGCGCTGCGCGCCGACGTGACGGGCGCGTTCTACGGCGTGCTCGCCGCGCAGCGCCAGTTGCAGGTCGCCGACGA ATCGGCCGCGATCGCCGCGCGCTCGGCCGACATGGCCGACAAGCGCGCCCGCGCGGGCAAGGTGTCGCCCGTCGAGGCGA CGAAGGCGCGCGTCGCGCAGACGGCCGCGCAGATCGAGCTGTCGAACGCGCAAACGCGGGTGGCGGCGGCGCTCGCGCGG CTCGCGAACGCGACAGGCAGCGCCGACGTGCGCGGGCGCGCCGCGTCGGGCGACCTCGACGCGTTGCCCGCCGCCGAGCC GCTGCCGCAACTGCTCGGCCGGCTCGACGACGCGCCGCTCGCGCGCGCGGCGAAAGCCGACATGCTGCGCACGAACGCGC AGATCGCGATCGAGCGCGCGAAGCGCGTGCCGGACATCACGGTGAGCGCGGGCGTCAAGCATGTCGTCACGGGCGGCGCG CCGGACAACCAGGCGGTCGTCGGCATCTCGATTCCGCTGCCGCTCTTCGACACGAACAGGGGCGCGCTGCTCGAAGCCGT CCACAACGCGGCGAAGGCAAGCGCCGATTTCGACGCCGAGCGCGCGCGGCTGCGGCTCGATCTCACCCAGGCCTATGCGA ACTACGAGCGCGCGACGGGCGAGGCGCGGCGGCTGAAGGCCGACGTGCTGCCCGCCGCGCGGCAGTCGCTCGACGCGATG TCGCGCGGCTACCAGCTCGGCAAGTTCGGCTTTCTCGACGTGCTCGACGCGCAGCGCACGCTGTTCGATGCGCAATCGCG CTACGTGCAGGCGCTCGCCGACGCGCATCAGTCGTATGCGGACATCGAGCGCGTCGTCGGCGCGCCGGCGCGCGACGCTT CCCGCCCCCTCGCCCAACTTCGCTGA
Upstream 100 bases:
>100_bases GCCCGCCGCCGCGAACGTGACAAAAATGTCATGTTCGCCTCATGTTTGCATTGCGGCACGTCCGTAGCATCGATCGCGTT TCACCGGAACTCGATCACTC
Downstream 100 bases:
>100_bases AGAACTCGCCATGCAACGCAAGCCCCTGATTCTCGCCGGCGCGGCCGCGGCCGGCGCTCTCGCCATCGTGCTGGCGCTCG CGCGCGCGCCGTCCACGTCG
Product: heavy metal resistance protein CzcC
Products: NA
Alternate protein names: Cation efflux system protein CzcC [H]
Number of amino acids: Translated: 461; Mature: 460
Protein sequence:
>461_residues MPKRIFAALVSAAIAASAVQAQAQPAPAPSAPDGPAAAPPDARAASVSVTPAVSPAPISTSTVSVAPPALSLDDALALAA ANNPLLKSARSSADASVGALVQAGARPNPTVSFLQEGFGRQERTTTAVVSQPIELGGKRRSRVDAASYGRESALASLDGR AAALRADVTGAFYGVLAAQRQLQVADESAAIAARSADMADKRARAGKVSPVEATKARVAQTAAQIELSNAQTRVAAALAR LANATGSADVRGRAASGDLDALPAAEPLPQLLGRLDDAPLARAAKADMLRTNAQIAIERAKRVPDITVSAGVKHVVTGGA PDNQAVVGISIPLPLFDTNRGALLEAVHNAAKASADFDAERARLRLDLTQAYANYERATGEARRLKADVLPAARQSLDAM SRGYQLGKFGFLDVLDAQRTLFDAQSRYVQALADAHQSYADIERVVGAPARDASRPLAQLR
Sequences:
>Translated_461_residues MPKRIFAALVSAAIAASAVQAQAQPAPAPSAPDGPAAAPPDARAASVSVTPAVSPAPISTSTVSVAPPALSLDDALALAA ANNPLLKSARSSADASVGALVQAGARPNPTVSFLQEGFGRQERTTTAVVSQPIELGGKRRSRVDAASYGRESALASLDGR AAALRADVTGAFYGVLAAQRQLQVADESAAIAARSADMADKRARAGKVSPVEATKARVAQTAAQIELSNAQTRVAAALAR LANATGSADVRGRAASGDLDALPAAEPLPQLLGRLDDAPLARAAKADMLRTNAQIAIERAKRVPDITVSAGVKHVVTGGA PDNQAVVGISIPLPLFDTNRGALLEAVHNAAKASADFDAERARLRLDLTQAYANYERATGEARRLKADVLPAARQSLDAM SRGYQLGKFGFLDVLDAQRTLFDAQSRYVQALADAHQSYADIERVVGAPARDASRPLAQLR >Mature_460_residues PKRIFAALVSAAIAASAVQAQAQPAPAPSAPDGPAAAPPDARAASVSVTPAVSPAPISTSTVSVAPPALSLDDALALAAA NNPLLKSARSSADASVGALVQAGARPNPTVSFLQEGFGRQERTTTAVVSQPIELGGKRRSRVDAASYGRESALASLDGRA AALRADVTGAFYGVLAAQRQLQVADESAAIAARSADMADKRARAGKVSPVEATKARVAQTAAQIELSNAQTRVAAALARL ANATGSADVRGRAASGDLDALPAAEPLPQLLGRLDDAPLARAAKADMLRTNAQIAIERAKRVPDITVSAGVKHVVTGGAP DNQAVVGISIPLPLFDTNRGALLEAVHNAAKASADFDAERARLRLDLTQAYANYERATGEARRLKADVLPAARQSLDAMS RGYQLGKFGFLDVLDAQRTLFDAQSRYVQALADAHQSYADIERVVGAPARDASRPLAQLR
Specific function: CzcC protein appears to modify the specificity of the system, perhaps by acting on the CzcB protein. When the CzcC protein is added to CzcA and CzcB, the efflux system gains specificity for cadmium and cobalt [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 47478; Mature: 47347
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKRIFAALVSAAIAASAVQAQAQPAPAPSAPDGPAAAPPDARAASVSVTPAVSPAPIST CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC STVSVAPPALSLDDALALAAANNPLLKSARSSADASVGALVQAGARPNPTVSFLQEGFGR CEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCCC QERTTTAVVSQPIELGGKRRSRVDAASYGRESALASLDGRAAALRADVTGAFYGVLAAQR CHHHHHHHHHCHHHHCCCHHHHCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH QLQVADESAAIAARSADMADKRARAGKVSPVEATKARVAQTAAQIELSNAQTRVAAALAR HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHH LANATGSADVRGRAASGDLDALPAAEPLPQLLGRLDDAPLARAAKADMLRTNAQIAIERA HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH KRVPDITVSAGVKHVVTGGAPDNQAVVGISIPLPLFDTNRGALLEAVHNAAKASADFDAE HCCCCEEHHCCCCEEEECCCCCCCEEEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCHH RARLRLDLTQAYANYERATGEARRLKADVLPAARQSLDAMSRGYQLGKFGFLDVLDAQRT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LFDAQSRYVQALADAHQSYADIERVVGAPARDASRPLAQLR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCC >Mature Secondary Structure PKRIFAALVSAAIAASAVQAQAQPAPAPSAPDGPAAAPPDARAASVSVTPAVSPAPIST CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC STVSVAPPALSLDDALALAAANNPLLKSARSSADASVGALVQAGARPNPTVSFLQEGFGR CEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCCC QERTTTAVVSQPIELGGKRRSRVDAASYGRESALASLDGRAAALRADVTGAFYGVLAAQR CHHHHHHHHHCHHHHCCCHHHHCCHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH QLQVADESAAIAARSADMADKRARAGKVSPVEATKARVAQTAAQIELSNAQTRVAAALAR HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHH LANATGSADVRGRAASGDLDALPAAEPLPQLLGRLDDAPLARAAKADMLRTNAQIAIERA HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH KRVPDITVSAGVKHVVTGGAPDNQAVVGISIPLPLFDTNRGALLEAVHNAAKASADFDAE HCCCCEEHHCCCCEEEECCCCCCCEEEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCHH RARLRLDLTQAYANYERATGEARRLKADVLPAARQSLDAMSRGYQLGKFGFLDVLDAQRT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LFDAQSRYVQALADAHQSYADIERVVGAPARDASRPLAQLR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2678100; 7766206 [H]