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The map label for this gene is rbcR [H]

Identifier: 126447238

GI number: 126447238

Start: 667139

End: 668026

Strand: Direct

Name: rbcR [H]

Synonym: BMA10247_A0718

Alternate gene names: 126447238

Gene position: 667139-668026 (Clockwise)

Preceding gene: 126446177

Following gene: 126445841

Centisome position: 28.36

GC content: 69.71

Gene sequence:

>888_bases
ATGGCTACTCCGACGCTCAAGCAACTCGATGCCTTTTATTGGGCGGCGACCTGCGCGAATTTCTCGACCGCCGCGCAGCG
GCTTCATCTGTCGATCTCGTCCTTATCGAAGCGAATCAACGAGCTGGAGCAGGCGGTCGGGCGCACGCTGTTCGATCGCA
GCGGCCATCGCGCGGTGCTGACCGAGGACGGCGTCGCGCTGCTGCCCGCGGCCGTCCGCGTGCTGGAATCGGTGGCCGCG
CTGCAGGACGCGTTCGCGGGGGAAAAGGGCTTGAGCGGGCGGCTGCGCTTCGGCGTCGGCGAACTGTCGGCGCTGACCTG
GCTTGCGCGCTTCGTCGCGGCCGTGCAGACCCTGCATCCGCAGTTGAGCCTCGAGCCGTATGTCGACGTGGGCGCGGCGC
TCGAAGAGAAGGTGGACGCGGGCGAGCTCGATTTCGCGGTGATCGCGGGCCGCTCGTCGCGCGGCAGCATCCTGTCGCAG
CCGGTGGCCGAAGCCCGGTTCGCGTGGATGGCCGCGGAGAAGCTCGTCGGCGGCGAGCGCGCGCTGACGCCGGGGTTGCT
CGCGCGCCATGCGCTCGTGATCCTGCCTTCGGGTTCGGGCGTCACGCGCATCCTCGACGAATGGCTGCTCGCATGCGGGA
TCAACCATCCGCGACGCATTGCGTGCAACCACTGGAGCGCGGTGGCCGGCATGCTGCGCGAAGGCGTCGGCATCGGCTTC
CTGCCCGCCGACTGGGCCGACGCGCGAGCGGGCGGCGGCCTCGTGCAACTGACGAGCGAGCCGCCGCTCTCGCCGCTTCA
CTATGCGTTCCAGTGGCGGCGCGGGGACATGCGCGGGCTGATTCCGTCGATGCTGGCGCTGGTGCGGCAGCACGCGGATT
TTCGCTGA

Upstream 100 bases:

>100_bases
TGTTGGGCTTTCCTGACGCGACGCAGCCATTCTATGCAGCTGCCACATCGATAAAAAGCGATAATCTTCAAACGAAATCG
TTCGATAAAAGCGAATAATC

Downstream 100 bases:

>100_bases
GCGGGCGCCCGGCCCGCGATGGGGCGTCGGGAGGTTCGGCGCCCGGCCGGCGGCGCCGCGGCGCGCCGGGCTCGCGCTGC
CGGCGGCACGAGGCGGGGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MATPTLKQLDAFYWAATCANFSTAAQRLHLSISSLSKRINELEQAVGRTLFDRSGHRAVLTEDGVALLPAAVRVLESVAA
LQDAFAGEKGLSGRLRFGVGELSALTWLARFVAAVQTLHPQLSLEPYVDVGAALEEKVDAGELDFAVIAGRSSRGSILSQ
PVAEARFAWMAAEKLVGGERALTPGLLARHALVILPSGSGVTRILDEWLLACGINHPRRIACNHWSAVAGMLREGVGIGF
LPADWADARAGGGLVQLTSEPPLSPLHYAFQWRRGDMRGLIPSMLALVRQHADFR

Sequences:

>Translated_295_residues
MATPTLKQLDAFYWAATCANFSTAAQRLHLSISSLSKRINELEQAVGRTLFDRSGHRAVLTEDGVALLPAAVRVLESVAA
LQDAFAGEKGLSGRLRFGVGELSALTWLARFVAAVQTLHPQLSLEPYVDVGAALEEKVDAGELDFAVIAGRSSRGSILSQ
PVAEARFAWMAAEKLVGGERALTPGLLARHALVILPSGSGVTRILDEWLLACGINHPRRIACNHWSAVAGMLREGVGIGF
LPADWADARAGGGLVQLTSEPPLSPLHYAFQWRRGDMRGLIPSMLALVRQHADFR
>Mature_294_residues
ATPTLKQLDAFYWAATCANFSTAAQRLHLSISSLSKRINELEQAVGRTLFDRSGHRAVLTEDGVALLPAAVRVLESVAAL
QDAFAGEKGLSGRLRFGVGELSALTWLARFVAAVQTLHPQLSLEPYVDVGAALEEKVDAGELDFAVIAGRSSRGSILSQP
VAEARFAWMAAEKLVGGERALTPGLLARHALVILPSGSGVTRILDEWLLACGINHPRRIACNHWSAVAGMLREGVGIGFL
PADWADARAGGGLVQLTSEPPLSPLHYAFQWRRGDMRGLIPSMLALVRQHADFR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=237, Percent_Identity=27.0042194092827, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=25.3112033195021, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI157672245, Length=261, Percent_Identity=26.0536398467433, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788626, Length=152, Percent_Identity=32.2368421052632, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31704; Mature: 31573

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPTLKQLDAFYWAATCANFSTAAQRLHLSISSLSKRINELEQAVGRTLFDRSGHRAVL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TEDGVALLPAAVRVLESVAALQDAFAGEKGLSGRLRFGVGELSALTWLARFVAAVQTLHP
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCC
QLSLEPYVDVGAALEEKVDAGELDFAVIAGRSSRGSILSQPVAEARFAWMAAEKLVGGER
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
ALTPGLLARHALVILPSGSGVTRILDEWLLACGINHPRRIACNHWSAVAGMLREGVGIGF
CCCHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCC
LPADWADARAGGGLVQLTSEPPLSPLHYAFQWRRGDMRGLIPSMLALVRQHADFR
CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATPTLKQLDAFYWAATCANFSTAAQRLHLSISSLSKRINELEQAVGRTLFDRSGHRAVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TEDGVALLPAAVRVLESVAALQDAFAGEKGLSGRLRFGVGELSALTWLARFVAAVQTLHP
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCC
QLSLEPYVDVGAALEEKVDAGELDFAVIAGRSSRGSILSQPVAEARFAWMAAEKLVGGER
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
ALTPGLLARHALVILPSGSGVTRILDEWLLACGINHPRRIACNHWSAVAGMLREGVGIGF
CCCHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCCCC
LPADWADARAGGGLVQLTSEPPLSPLHYAFQWRRGDMRGLIPSMLALVRQHADFR
CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]